NO01G05260.1, NO01G05260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05260.1
Unique NameNO01G05260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1515
Alignment locationchr1:1403408..1405167 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1403408..1405167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G05260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05260NO01G05260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05260.1NO01G05260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05260.1.cds1NO01G05260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05260.1.cds2NO01G05260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05260.1.cds3NO01G05260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05260.1 ID=NO01G05260.1|Name=NO01G05260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp
CACCCTACAGCACAGAATTTATGCCCTCTGTCGGCTGCCGTTCCAGCGCT
GCGGCCATTTTGGATGTCGTCCCTCAAGCGTCCAAGCTTTGTAGTGACCA
CATGCAGACACCTCTCTCCTCCCATACGTCACCGCTAGCATCGCATGTGG
CTGCCAAGTTTACGACTTGGCTGCAGGAGGATAACCACCCTTACCGTGCC
CTTTGCCAAGAAGATAGCGAGGCCCGTGTCCACGTCATTGTAAGGTTGCT
TCACAAGTTCTTGATGCTTTGCAAGGCTAGGCCTTCTCACCCTTTGGAGA
GCCAGGAGGTACTTGAGCTCTGGGAGAACAACAAGGAGCTGTTTGAATCC
ATAGTCAATTATACTGCCACAACGCTGCACTGTTGGCGGTCATTCGTCTG
TTTTTTGAAGCAAAAGGTAGAAATGAGTGAGAGCATCAGCACTGCCATTG
CCACCCCTGCCACCACTACTAGGTGCGGCAAAGGTCAGACCGTAGAGAAG
GTCATGTCATCTGAGAACTTTGTCATTCTACCCGCAGTCGCTCCAACCAT
TACAAATCACTCCAGCCCCGTTATTGCCGGCACTGATCTCCTCAAAGATC
TATCGTGGGCCGTCGTCCGTCATAAATCGGGCTCAATGGCCAAGCTCCGA
CCGGTCTACCAGCCCAAGACTGGTGAGGCAATGATCGAGGAGGCGTTGAA
TACACGAGAGCAGGCACACTTGCCGCCACAGACGTACCACCAAACAAAGG
TCTATCCGCCACCTAACCGCCCTGGAGCCACTGCCATACCAATCATGTGG
CCACCATCGCCCAGCTTTGAATCCATGGGGAGGGTAATTTCACGATCACA
TTTACCCCCCATCTCCTCTTCCTCCATGCGCATCAAGCTCACCAAGAGGA
AACGCACGCTGGCCCAACACTTGCAACAGTCCGGCAAAAGGAGGAAAACA
AATCTTTTAGTACTTGATCGACGTGAGCAGCAGTTGCTGCGGAAATCGCT
ATCTCTACCACCTACTTCCTCCTCCATCATATTACAAGCGGACAATACAA
CCTCACCTGCGGGAGCCAAAATGGACGAAGGCATTGCGGATGATGAGAAA
GTTGTGATCACCACTGCTGACACAGCTTGTGGCTGTTCTGGAGGTTCTAT
CTTGTCGGCAGTAGAGGGATATGAATCTTACTATTGCAAAGAAACCACTG
TGGCTCAGACCTTACTCTCTTTAGCATCGGCATCCTGGAAGAAGAGTACT
TCTACTATTGCCCGCAAGCCAGAAGCACAAGGCAAGAATAGCATCACAAG
TACCAATAGCTGTCACCCTCCGAGCCATGATTCTATTCAAATTTAGTTTC
ACAAACGAAATGAGCATTGTGACGGATGTTTAAAGAGACTTCGCGCACGG
GAATGTAGTTATGAGAGGTCATCAGGCCCGGAAGTATGAGATGTGACTTT
TCCCCCAACAAAAATTATCCAATTACCTTGACGACAGAAAGGTCGAAGTG
TGATAAAATTAGAGG
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protein sequence of NO01G05260.1

>NO01G05260.1-protein ID=NO01G05260.1-protein|Name=NO01G05260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MPSVGCRSSAAAILDVVPQASKLCSDHMQTPLSSHTSPLASHVAAKFTTW
LQEDNHPYRALCQEDSEARVHVIVRLLHKFLMLCKARPSHPLESQEVLEL
WENNKELFESIVNYTATTLHCWRSFVCFLKQKVEMSESISTAIATPATTT
RCGKGQTVEKVMSSENFVILPAVAPTITNHSSPVIAGTDLLKDLSWAVVR
HKSGSMAKLRPVYQPKTGEAMIEEALNTREQAHLPPQTYHQTKVYPPPNR
PGATAIPIMWPPSPSFESMGRVISRSHLPPISSSSMRIKLTKRKRTLAQH
LQQSGKRRKTNLLVLDRREQQLLRKSLSLPPTSSSIILQADNTTSPAGAK
MDEGIADDEKVVITTADTACGCSGGSILSAVEGYESYYCKETTVAQTLLS
LASASWKKSTSTIARKPEAQGKNSITSTNSCHPPSHDSIQI*
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mRNA from alignment at chr1:1403408..1405167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05260.1 ID=NO01G05260.1|Name=NO01G05260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1760bp|location=Sequence derived from alignment at chr1:1403408..1405167- (Nannochloropsis oceanica)
CACCCTACAGCACAGAATTTATGCCCTCTGTCGGCTGCCGTTCCAGCGCT
GCGGCCATTTTGGATGTCGTCCCTCAAGCGTCCAAGCTTTGTAGTGACCA
CATGCAGACACCTCTCTCCTCCCATACGTCACCGCTAGCATCGCATGTGG
CTGCCAAGTTTACGACTTGGCTGCAGGAGGATAACCACCCTTACCGTGCC
CTTTGCCAAGAAGATAGCGAGGCAAGTCGATAGCCCATTAAGAAATATTC
CATGCCATCCTTAACAATCGCCACACTTTCACATTATTCGTCGCTCATCA
ATCAAATTTGCTTTTAACTCAATATCCCTCTTCGATAGGCCCGTGTCCAC
GTCATTGTAAGGTTGCTTCACAAGTTCTTGATGCTTTGCAAGGCTAGGCC
TTCTCACCCTTTGGAGAGCCAGGAGGTACTTGAGCTCTGGGAGAACAACA
AGGAGCTGTTTGAATCCATAGTCAATTATACTGCCACAACGCTGCACTGT
TGGTAAGAATGAAGGGCAATGGAGGACCGGGGCAGCTTTGTAAAAAGACC
AATGTAGTGATATTTTGAGCATCTAATCAGCTCTTCTTCTTTTTTCTTGC
ACATCCCCGCACCGAAATTTCTCATGACAGGCGGTCATTCGTCTGTTTTT
TGAAGCAAAAGGTAGAAATGAGTGAGAGCATCAGCACTGCCATTGCCACC
CCTGCCACCACTACTAGGTGCGGCAAAGGTCAGACCGTAGAGAAGGTCAT
GTCATCTGAGAACTTTGTCATTCTACCCGCAGTCGCTCCAACCATTACAA
ATCACTCCAGCCCCGTTATTGCCGGCACTGATCTCCTCAAAGATCTATCG
TGGGCCGTCGTCCGTCATAAATCGGGCTCAATGGCCAAGCTCCGACCGGT
CTACCAGCCCAAGACTGGTGAGGCAATGATCGAGGAGGCGTTGAATACAC
GAGAGCAGGCACACTTGCCGCCACAGACGTACCACCAAACAAAGGTCTAT
CCGCCACCTAACCGCCCTGGAGCCACTGCCATACCAATCATGTGGCCACC
ATCGCCCAGCTTTGAATCCATGGGGAGGGTAATTTCACGATCACATTTAC
CCCCCATCTCCTCTTCCTCCATGCGCATCAAGCTCACCAAGAGGAAACGC
ACGCTGGCCCAACACTTGCAACAGTCCGGCAAAAGGAGGAAAACAAATCT
TTTAGTACTTGATCGACGTGAGCAGCAGTTGCTGCGGAAATCGCTATCTC
TACCACCTACTTCCTCCTCCATCATATTACAAGCGGACAATACAACCTCA
CCTGCGGGAGCCAAAATGGACGAAGGCATTGCGGATGATGAGAAAGTTGT
GATCACCACTGCTGACACAGCTTGTGGCTGTTCTGGAGGTTCTATCTTGT
CGGCAGTAGAGGGATATGAATCTTACTATTGCAAAGAAACCACTGTGGCT
CAGACCTTACTCTCTTTAGCATCGGCATCCTGGAAGAAGAGTACTTCTAC
TATTGCCCGCAAGCCAGAAGCACAAGGCAAGAATAGCATCACAAGTACCA
ATAGCTGTCACCCTCCGAGCCATGATTCTATTCAAATTTAGTTTCACAAA
CGAAATGAGCATTGTGACGGATGTTTAAAGAGACTTCGCGCACGGGAATG
TAGTTATGAGAGGTCATCAGGCCCGGAAGTATGAGATGTGACTTTTCCCC
CAACAAAAATTATCCAATTACCTTGACGACAGAAAGGTCGAAGTGTGATA
AAATTAGAGG
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Coding sequence (CDS) from alignment at chr1:1403408..1405167-

>NO01G05260.1 ID=NO01G05260.1|Name=NO01G05260.1|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at chr1:1403408..1405167- (Nannochloropsis oceanica)
ATGCCCTCTGTCGGCTGCCGTTCCAGCGCTGCGGCCATTTTGGATGTCGT
CCCTCAAGCGTCCAAGCTTTGTAGTGACCACATGCAGACACCTCTCTCCT
CCCATACGTCACCGCTAGCATCGCATGTGGCTGCCAAGTTTACGACTTGG
CTGCAGGAGGATAACCACCCTTACCGTGCCCTTTGCCAAGAAGATAGCGA
GGCCCGTGTCCACGTCATTGTAAGGTTGCTTCACAAGTTCTTGATGCTTT
GCAAGGCTAGGCCTTCTCACCCTTTGGAGAGCCAGGAGGTACTTGAGCTC
TGGGAGAACAACAAGGAGCTGTTTGAATCCATAGTCAATTATACTGCCAC
AACGCTGCACTGTTGGCGGTCATTCGTCTGTTTTTTGAAGCAAAAGGTAG
AAATGAGTGAGAGCATCAGCACTGCCATTGCCACCCCTGCCACCACTACT
AGGTGCGGCAAAGGTCAGACCGTAGAGAAGGTCATGTCATCTGAGAACTT
TGTCATTCTACCCGCAGTCGCTCCAACCATTACAAATCACTCCAGCCCCG
TTATTGCCGGCACTGATCTCCTCAAAGATCTATCGTGGGCCGTCGTCCGT
CATAAATCGGGCTCAATGGCCAAGCTCCGACCGGTCTACCAGCCCAAGAC
TGGTGAGGCAATGATCGAGGAGGCGTTGAATACACGAGAGCAGGCACACT
TGCCGCCACAGACGTACCACCAAACAAAGGTCTATCCGCCACCTAACCGC
CCTGGAGCCACTGCCATACCAATCATGTGGCCACCATCGCCCAGCTTTGA
ATCCATGGGGAGGGTAATTTCACGATCACATTTACCCCCCATCTCCTCTT
CCTCCATGCGCATCAAGCTCACCAAGAGGAAACGCACGCTGGCCCAACAC
TTGCAACAGTCCGGCAAAAGGAGGAAAACAAATCTTTTAGTACTTGATCG
ACGTGAGCAGCAGTTGCTGCGGAAATCGCTATCTCTACCACCTACTTCCT
CCTCCATCATATTACAAGCGGACAATACAACCTCACCTGCGGGAGCCAAA
ATGGACGAAGGCATTGCGGATGATGAGAAAGTTGTGATCACCACTGCTGA
CACAGCTTGTGGCTGTTCTGGAGGTTCTATCTTGTCGGCAGTAGAGGGAT
ATGAATCTTACTATTGCAAAGAAACCACTGTGGCTCAGACCTTACTCTCT
TTAGCATCGGCATCCTGGAAGAAGAGTACTTCTACTATTGCCCGCAAGCC
AGAAGCACAAGGCAAGAATAGCATCACAAGTACCAATAGCTGTCACCCTC
CGAGCCATGATTCTATTCAAATTTAG
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Synonyms
Publications