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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1375145..1376983 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05180.1 vs.
Match: EWM29456.1 (hypothetical protein Naga_100083g17 [Nannochloropsis gaditana]) HSP 1 Score: 830.1 bits (2143), Expect = 4.500e-237 Identity = 426/620 (68.71%), Postives = 496/620 (80.00%), Query Frame = 0
Query: 1 MNKDWNGLAKSGGLEKLKVGELKGFLKDHGISQTGEKGTLMFRIKAFLDGERLKIDGLNPALLKAGELKKECAKRGLSPMGYPDELLESLIGYLKTHGSRD-STAAASGERPSAQEKTGAESGENEEEGNKGGNATLALIQRIVELGEEDDWGGILGLGATGQKLTKQSPTADLRKAYHRLSLLVHPDRVGPGMGDATRAFQSVVTAFERLSEPELEEEEGKKDAKAGKKKEKGKTLARSNENCFRTRVYCPRCKTEWGQSIDGLPPYTYNYMMMGLKTFVCSTCLCDFGALTAIHKCPHCRRSFEYDPHDYHREITCGNKNCGKPFGFYLFQVSDRVENELKAELKAEQERRIRARESKMARLARSKRKH--AEKDNEEREREDRRLKLRLFVQGLVDDCPQCGEEPGCAPEDREAHKEHLRQCQDKDKISKHQKKIRMEEARQAEKEARTTAQEDMQSLRTWEFLGGNEGELWLLTDGQLERKCREKGLLPKEE-------EMKGAGTWKRKKSTRPMSKDEMIAQLVQHANKRAALRLTDGTEKGAAGVKKCRKGGNTMTRESLPDNLYSVSLSQLRSVCAAHGYVPQATTQSGLVREMERVVAKAEGHEETLLLED 611
M+K+WN LAK GGLEKLKVGELKGFLK++G+SQTGEKGTLMFRIKAFLDGE +KIDG NPA +KAGELKKECAKRGLSPMGYPDELLESLI YLKTHG D +T AA G + +KT G+ E+ G+ AL+ RI++LGEE+DW IL LG TG K+++QSPTA LRK YHRLSL VHPDR+G + +AT+AFQ+VVTAFERLSEPE EEE+G K GK K KTLARSNENCFR+R+YCPRC+TEWGQ IDGLPPYTYNYMMMGLKTFVCSTCLCDFGALTA+HKCPHCRRSFEYDPHDYHR++ CGNK C KPFGF+LF VSDRVE E++ EL+AEQERR+RARESK+ARLARSKRK EK E+ +DRRL+LRLFVQGL+D CP+CGEE C PEDREAHK+HLR C DKDKI H++K+R EA QA+KEA+ QED+QSLRTWEFLGGNEGELWLLTDGQL C+EK LLPKEE + KG+G +K + +SKDEMIA+LV + + LRLTDGTE G ++C + +R+SLPDNL+ +SL QLR+VCAAH YVPQAT+Q+ LVRE+ER AK EGHEETLLLED
Sbjct: 1 MSKNWNVLAKGGGLEKLKVGELKGFLKENGLSQTGEKGTLMFRIKAFLDGEGMKIDGRNPATMKAGELKKECAKRGLSPMGYPDELLESLINYLKTHGGADKATNAAPGIDQKSTDKT---LGKAEDNIGDDGDVASALVHRIMQLGEEEDWAAILNLGCTGLKVSRQSPTALLRKCYHRLSLNVHPDRLGGSVPEATKAFQAVVTAFERLSEPEREEEQGNKK---GKATTKTKTLARSNENCFRSRIYCPRCRTEWGQPIDGLPPYTYNYMMMGLKTFVCSTCLCDFGALTALHKCPHCRRSFEYDPHDYHRQVVCGNKGCTKPFGFFLFPVSDRVEKEMRGELRAEQERRLRARESKLARLARSKRKREGMEKGEGEQAADDRRLQLRLFVQGLLDACPRCGEEVACKPEDREAHKDHLRDCHDKDKIEAHREKVRKAEAHQADKEAKRAQQEDLQSLRTWEFLGGNEGELWLLTDGQLAHLCKEKALLPKEEIDEMGMGDKKGSGA--KKTTAAALSKDEMIAKLVAQSKREGPLRLTDGTESGDI-KRECGEPNTRFSRDSLPDNLHGMSLLQLRAVCAAHAYVPQATSQAALVRELERAAAKVEGHEETLLLED 611
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05180.1 ID=NO01G05180.1|Name=NO01G05180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp ATGAACAAGGACTGGAATGGCCTGGCCAAGTCAGGTGGCCTGGAGAAGCT CAAGGTGGGCGAGCTCAAGGGCTTTTTGAAGGACCATGGTATTTCTCAAA CAGGGGAGAAAGGAACACTTATGTTCCGCATAAAGGCGTTTTTGGACGGG GAGCGTCTGAAGATAGACGGCCTCAACCCCGCCTTGCTCAAGGCAGGTGA GCTGAAGAAGGAGTGTGCGAAGCGCGGGCTCTCGCCAATGGGTTACCCAG ACGAACTGCTCGAGAGTCTAATCGGCTACCTCAAGACACACGGTAGCAGG GACAGTACTGCTGCTGCTAGTGGTGAGAGACCCAGCGCCCAGGAGAAAAC GGGTGCAGAAAGTGGGGAAAACGAGGAGGAGGGCAATAAAGGTGGTAATG CAACTTTAGCTTTGATCCAACGCATTGTGGAGCTGGGGGAGGAGGACGAC TGGGGTGGGATCCTAGGCTTGGGTGCGACTGGGCAGAAGCTGACGAAGCA GAGCCCAACAGCCGATCTTCGCAAGGCTTACCACCGCCTTTCTCTTTTGG TGCATCCAGATCGGGTAGGCCCGGGGATGGGGGATGCAACGCGTGCTTTC CAGTCAGTGGTGACGGCTTTTGAGCGTTTATCGGAGCCTGAGCTGGAGGA GGAGGAGGGGAAGAAGGATGCTAAGGCAGGGAAGAAGAAAGAGAAGGGCA AGACTCTTGCACGGTCCAACGAGAATTGTTTCCGAACGCGGGTGTATTGT CCTCGCTGCAAAACGGAGTGGGGTCAGTCTATTGATGGCCTGCCTCCCTA CACCTACAACTATATGATGATGGGGCTGAAGACCTTCGTGTGCTCCACCT GCCTCTGCGATTTCGGGGCACTCACCGCCATCCACAAATGTCCGCATTGC CGCAGGTCCTTCGAGTACGATCCGCACGACTATCACCGGGAGATCACTTG TGGGAATAAAAATTGTGGGAAGCCTTTTGGCTTTTACCTCTTTCAAGTCT CGGATCGCGTCGAGAATGAACTCAAGGCGGAGCTCAAGGCGGAGCAGGAA CGACGGATCAGAGCGCGAGAGAGTAAGATGGCACGGTTGGCGCGGTCGAA GCGGAAGCATGCGGAAAAAGATAATGAGGAGAGAGAGCGCGAGGATAGGC GGTTAAAACTTCGCTTGTTTGTACAGGGCTTGGTGGATGATTGTCCGCAG TGTGGGGAGGAGCCAGGGTGTGCGCCTGAGGATCGAGAGGCACACAAGGA GCATTTGAGGCAGTGTCAAGACAAGGACAAGATTTCCAAGCACCAGAAGA AGATTCGGATGGAGGAGGCAAGGCAGGCGGAGAAGGAGGCAAGGACAACG GCGCAGGAGGACATGCAGTCGTTGCGGACGTGGGAGTTCCTGGGAGGGAA TGAGGGGGAGCTGTGGCTGTTGACTGATGGTCAGCTTGAACGCAAGTGCA GGGAGAAAGGTTTACTGCCAAAGGAAGAGGAGATGAAGGGGGCAGGTACC TGGAAGAGGAAGAAGAGCACTCGTCCTATGAGCAAGGACGAGATGATCGC GCAGCTTGTACAGCACGCTAATAAGAGGGCAGCGCTTCGGCTCACGGATG GGACAGAAAAGGGTGCCGCTGGTGTCAAGAAATGTAGGAAAGGAGGTAAC ACCATGACTCGTGAATCTTTGCCGGACAACCTTTATAGTGTGTCCCTTTC ACAGCTTCGGTCCGTGTGTGCGGCGCATGGGTACGTGCCTCAGGCGACCA CGCAGAGCGGGTTGGTCCGGGAGATGGAGCGGGTAGTAGCCAAGGCAGAA GGACATGAGGAGACATTGTTACTGGAAGACTTGAAGTGA back to topprotein sequence of NO01G05180.1 >NO01G05180.1-protein ID=NO01G05180.1-protein|Name=NO01G05180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=613bp MNKDWNGLAKSGGLEKLKVGELKGFLKDHGISQTGEKGTLMFRIKAFLDG ERLKIDGLNPALLKAGELKKECAKRGLSPMGYPDELLESLIGYLKTHGSR DSTAAASGERPSAQEKTGAESGENEEEGNKGGNATLALIQRIVELGEEDD WGGILGLGATGQKLTKQSPTADLRKAYHRLSLLVHPDRVGPGMGDATRAF QSVVTAFERLSEPELEEEEGKKDAKAGKKKEKGKTLARSNENCFRTRVYC PRCKTEWGQSIDGLPPYTYNYMMMGLKTFVCSTCLCDFGALTAIHKCPHC RRSFEYDPHDYHREITCGNKNCGKPFGFYLFQVSDRVENELKAELKAEQE RRIRARESKMARLARSKRKHAEKDNEEREREDRRLKLRLFVQGLVDDCPQ CGEEPGCAPEDREAHKEHLRQCQDKDKISKHQKKIRMEEARQAEKEARTT AQEDMQSLRTWEFLGGNEGELWLLTDGQLERKCREKGLLPKEEEMKGAGT WKRKKSTRPMSKDEMIAQLVQHANKRAALRLTDGTEKGAAGVKKCRKGGN TMTRESLPDNLYSVSLSQLRSVCAAHGYVPQATTQSGLVREMERVVAKAE GHEETLLLEDLK* back to topmRNA from alignment at chr1:1375145..1376983+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05180.1 ID=NO01G05180.1|Name=NO01G05180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp|location=Sequence derived from alignment at chr1:1375145..1376983+ (Nannochloropsis oceanica) ATGAACAAGGACTGGAATGGCCTGGCCAAGTCAGGTGGCCTGGAGAAGCT
CAAGGTGGGCGAGCTCAAGGGCTTTTTGAAGGACCATGGTATTTCTCAAA
CAGGGGAGAAAGGAACACTTATGTTCCGCATAAAGGCGTTTTTGGACGGG
GAGCGTCTGAAGATAGACGGCCTCAACCCCGCCTTGCTCAAGGCAGGTGA
GCTGAAGAAGGAGTGTGCGAAGCGCGGGCTCTCGCCAATGGGTTACCCAG
ACGAACTGCTCGAGAGTCTAATCGGCTACCTCAAGACACACGGTAGCAGG
GACAGTACTGCTGCTGCTAGTGGTGAGAGACCCAGCGCCCAGGAGAAAAC
GGGTGCAGAAAGTGGGGAAAACGAGGAGGAGGGCAATAAAGGTGGTAATG
CAACTTTAGCTTTGATCCAACGCATTGTGGAGCTGGGGGAGGAGGACGAC
TGGGGTGGGATCCTAGGCTTGGGTGCGACTGGGCAGAAGCTGACGAAGCA
GAGCCCAACAGCCGATCTTCGCAAGGCTTACCACCGCCTTTCTCTTTTGG
TGCATCCAGATCGGGTAGGCCCGGGGATGGGGGATGCAACGCGTGCTTTC
CAGTCAGTGGTGACGGCTTTTGAGCGTTTATCGGAGCCTGAGCTGGAGGA
GGAGGAGGGGAAGAAGGATGCTAAGGCAGGGAAGAAGAAAGAGAAGGGCA
AGACTCTTGCACGGTCCAACGAGAATTGTTTCCGAACGCGGGTGTATTGT
CCTCGCTGCAAAACGGAGTGGGGTCAGTCTATTGATGGCCTGCCTCCCTA
CACCTACAACTATATGATGATGGGGCTGAAGACCTTCGTGTGCTCCACCT
GCCTCTGCGATTTCGGGGCACTCACCGCCATCCACAAATGTCCGCATTGC
CGCAGGTCCTTCGAGTACGATCCGCACGACTATCACCGGGAGATCACTTG
TGGGAATAAAAATTGTGGGAAGCCTTTTGGCTTTTACCTCTTTCAAGTCT
CGGATCGCGTCGAGAATGAACTCAAGGCGGAGCTCAAGGCGGAGCAGGAA
CGACGGATCAGAGCGCGAGAGAGTAAGATGGCACGGTTGGCGCGGTCGAA
GCGGAAGCATGCGGAAAAAGATAATGAGGAGAGAGAGCGCGAGGATAGGC
GGTTAAAACTTCGCTTGTTTGTACAGGGCTTGGTGGATGATTGTCCGCAG
TGTGGGGAGGAGCCAGGGTGTGCGCCTGAGGATCGAGAGGCACACAAGGA
GCATTTGAGGCAGTGTCAAGACAAGGACAAGATTTCCAAGCACCAGAAGA
AGATTCGGATGGAGGAGGCAAGGCAGGCGGAGAAGGAGGCAAGGACAACG
GCGCAGGAGGACATGCAGTCGTTGCGGACGTGGGAGTTCCTGGGAGGGAA
TGAGGGGGAGCTGTGGCTGTTGACTGATGGTCAGCTTGAACGCAAGTGCA
GGGAGAAAGGTTTACTGCCAAAGGAAGAGGAGATGAAGGGGGCAGGTACC
TGGAAGAGGAAGAAGAGCACTCGTCCTATGAGCAAGGACGAGATGATCGC
GCAGCTTGTACAGCACGCTAATAAGAGGGCAGCGCTTCGGCTCACGGATG
GGACAGAAAAGGGTGCCGCTGGTGTCAAGAAATGTAGGAAAGGAGGTAAC
ACCATGACTCGTGAATCTTTGCCGGACAACCTTTATAGTGTGTCCCTTTC
ACAGCTTCGGTCCGTGTGTGCGGCGCATGGGTACGTGCCTCAGGCGACCA
CGCAGAGCGGGTTGGTCCGGGAGATGGAGCGGGTAGTAGCCAAGGCAGAA
GGACATGAGGAGACATTGTTACTGGAAGACTTGAAGTGA back to topCoding sequence (CDS) from alignment at chr1:1375145..1376983+ >NO01G05180.1 ID=NO01G05180.1|Name=NO01G05180.1|organism=Nannochloropsis oceanica|type=CDS|length=1839bp|location=Sequence derived from alignment at chr1:1375145..1376983+ (Nannochloropsis oceanica) ATGAACAAGGACTGGAATGGCCTGGCCAAGTCAGGTGGCCTGGAGAAGCT CAAGGTGGGCGAGCTCAAGGGCTTTTTGAAGGACCATGGTATTTCTCAAA CAGGGGAGAAAGGAACACTTATGTTCCGCATAAAGGCGTTTTTGGACGGG GAGCGTCTGAAGATAGACGGCCTCAACCCCGCCTTGCTCAAGGCAGGTGA GCTGAAGAAGGAGTGTGCGAAGCGCGGGCTCTCGCCAATGGGTTACCCAG ACGAACTGCTCGAGAGTCTAATCGGCTACCTCAAGACACACGGTAGCAGG GACAGTACTGCTGCTGCTAGTGGTGAGAGACCCAGCGCCCAGGAGAAAAC GGGTGCAGAAAGTGGGGAAAACGAGGAGGAGGGCAATAAAGGTGGTAATG CAACTTTAGCTTTGATCCAACGCATTGTGGAGCTGGGGGAGGAGGACGAC TGGGGTGGGATCCTAGGCTTGGGTGCGACTGGGCAGAAGCTGACGAAGCA GAGCCCAACAGCCGATCTTCGCAAGGCTTACCACCGCCTTTCTCTTTTGG TGCATCCAGATCGGGTAGGCCCGGGGATGGGGGATGCAACGCGTGCTTTC CAGTCAGTGGTGACGGCTTTTGAGCGTTTATCGGAGCCTGAGCTGGAGGA GGAGGAGGGGAAGAAGGATGCTAAGGCAGGGAAGAAGAAAGAGAAGGGCA AGACTCTTGCACGGTCCAACGAGAATTGTTTCCGAACGCGGGTGTATTGT CCTCGCTGCAAAACGGAGTGGGGTCAGTCTATTGATGGCCTGCCTCCCTA CACCTACAACTATATGATGATGGGGCTGAAGACCTTCGTGTGCTCCACCT GCCTCTGCGATTTCGGGGCACTCACCGCCATCCACAAATGTCCGCATTGC CGCAGGTCCTTCGAGTACGATCCGCACGACTATCACCGGGAGATCACTTG TGGGAATAAAAATTGTGGGAAGCCTTTTGGCTTTTACCTCTTTCAAGTCT CGGATCGCGTCGAGAATGAACTCAAGGCGGAGCTCAAGGCGGAGCAGGAA CGACGGATCAGAGCGCGAGAGAGTAAGATGGCACGGTTGGCGCGGTCGAA GCGGAAGCATGCGGAAAAAGATAATGAGGAGAGAGAGCGCGAGGATAGGC GGTTAAAACTTCGCTTGTTTGTACAGGGCTTGGTGGATGATTGTCCGCAG TGTGGGGAGGAGCCAGGGTGTGCGCCTGAGGATCGAGAGGCACACAAGGA GCATTTGAGGCAGTGTCAAGACAAGGACAAGATTTCCAAGCACCAGAAGA AGATTCGGATGGAGGAGGCAAGGCAGGCGGAGAAGGAGGCAAGGACAACG GCGCAGGAGGACATGCAGTCGTTGCGGACGTGGGAGTTCCTGGGAGGGAA TGAGGGGGAGCTGTGGCTGTTGACTGATGGTCAGCTTGAACGCAAGTGCA GGGAGAAAGGTTTACTGCCAAAGGAAGAGGAGATGAAGGGGGCAGGTACC TGGAAGAGGAAGAAGAGCACTCGTCCTATGAGCAAGGACGAGATGATCGC GCAGCTTGTACAGCACGCTAATAAGAGGGCAGCGCTTCGGCTCACGGATG GGACAGAAAAGGGTGCCGCTGGTGTCAAGAAATGTAGGAAAGGAGGTAAC ACCATGACTCGTGAATCTTTGCCGGACAACCTTTATAGTGTGTCCCTTTC ACAGCTTCGGTCCGTGTGTGCGGCGCATGGGTACGTGCCTCAGGCGACCA CGCAGAGCGGGTTGGTCCGGGAGATGGAGCGGGTAGTAGCCAAGGCAGAA GGACATGAGGAGACATTGTTACTGGAAGACTTGAAGTGA back to top
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