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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:1064193..1066978 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03990.1 vs.
Match: EWM29334.1 (u4 tri-snrnp-associated protein 2 [Nannochloropsis gaditana]) HSP 1 Score: 823.2 bits (2125), Expect = 6.300e-235 Identity = 431/616 (69.97%), Postives = 480/616 (77.92%), Query Frame = 0
Query: 70 MKRTRDEDEDQGGANEGSAVQATASTSSASAISSRPKCPYLDTVNRSYLDFDFEKVCSVSLSNMNIYACLVCGKFFQGRGPRTQAHTHSVQAFHHVFMNLHNARIYCLPDNYEVLDSSLDDIKRALFPSFPPSDIARLDSNTTLVRDVHGVSFLPGFIGLNNLKNTDYVNVVLQALAHIVPLRDFFLQPSLYQDGVGGEAIAATGGGGGGGGGGGTKAHFQLVLLFGEVMRKLWSKYNFKSTVSPHDFLQEVVGASGKRFKIGKQGEAAEFLSWLLHHLHVGLVGR---------EGKKKGNKGGSSVILECLQGEIKVMTQTKVKKILTLGGGKAGREDEEDDGTGRNVGRGGEDDVAEIGEGEWVETVAKAPFLFLTVNIPQTPLFKDSQGGVIIPQVPLYSVLEKFNGRKVVDVVKGGVHTRKKYWITRLPRYLILSLARLTRNHFFVEKNPTIVNFPVKNLEMKDYFFPDEGGEEGGKGGLPTEEELAVMSVGELKAFVLAHGGGGAAGQVRGAVEKAELVEIARRVLLEIGGTKYDLVANVVHDSPPGQEKKEATSRGEDSGVPQGTYRVHVFNRASDQWYEIQDLHVQETLPQLITISESCLLIYEKKGL 677
MKR R E ED G GS +A+ S+ + A S RPKCPYLDTVNR+YLDFDFEK+CSVSLSNMNIY CLVCGKFFQGRGPRT AHTHS+ FHHVFMNLH ARI+CLPDNYEVLDSSLDDIKRALFPSF P+ IA+LD+NTTLVRDVHGVS+LPGF+GLNNLK+TDYVNVVLQAL H+ PLR++FLQPSLY+ G A QLVL FGEVMRKLWS+ NFKSTVSPHDFLQEVV ASGKRF IGK GEA +FLSWLLH LHVGL G EG KK G SV+L+C QGEI+V T TK +K T+GG + E +EDDGTGR G G +++ GEW + ++PFLFLTV+IPQTPLFKDSQGGVIIP +PLYSVL+KFNG KVVD VK GVHTRK+YWITRLP+YLILSLARLTRNHFFVEKNPTIVNFPVKNLE++DYF P+ GLPTEE L M+VGELK FV AHGGG A + AVE+ +L E AR VL E+ GTKYDLVANVVHDSPPGQEKKEA +RGE P GTYRVHVFNRASDQWYEIQDLHVQETLPQLITISESC+LIYEKKG+
Sbjct: 1 MKRAR-EPEDNNGTVHGSRDRASTSSVAPKASSLRPKCPYLDTVNRTYLDFDFEKLCSVSLSNMNIYVCLVCGKFFQGRGPRTHAHTHSLHDFHHVFMNLHTARIFCLPDNYEVLDSSLDDIKRALFPSFTPAAIAQLDTNTTLVRDVHGVSYLPGFVGLNNLKSTDYVNVVLQALGHVTPLRNYFLQPSLYEAG----------------------AKNQLVLRFGEVMRKLWSQDNFKSTVSPHDFLQEVVSASGKRFAIGKPGEAVDFLSWLLHQLHVGLGGTMPMVGCKGGEGGKKKKAGRRSVVLDCFQGEIRVRTLTKARKDWTVGG-RGEEEGDEDDGTGR--GNGAQEEKEGEPAGEWAVSETRSPFLFLTVDIPQTPLFKDSQGGVIIPHIPLYSVLDKFNGVKVVDAVKAGVHTRKQYWITRLPQYLILSLARLTRNHFFVEKNPTIVNFPVKNLELRDYFLPE--------AGLPTEEGLKTMTVGELKGFVQAHGGGDA----KEAVEREDLEEQARAVLNEVAGTKYDLVANVVHDSPPGQEKKEA-ARGE--ATPPGTYRVHVFNRASDQWYEIQDLHVQETLPQLITISESCVLIYEKKGV 575
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03990.1 ID=NO01G03990.1|Name=NO01G03990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2416bp
CATGCGTGCAGGTCCATGTGATGCTATTGCATCTCCCTCCCTCCACAAAT
ACGCCGCATCGAGCCTTCCTGCCGCATGCGCACTGAGCATATAGCTCTCA
CAAAAGGGTGCACGTGGATGGTGGCCGATAATTCGAGAAGAGGGGAGGCC
AGGGCATTAGCAGTGGCTGGAGCTCACGCGGCCCGCTGGGCATCATCGCT
AACGACTGCTCTCTTCACTTCCGGTCCTCCCGCTTTTACCCACATCTTGC
ACACACCACAGAACACGCCACGCCGCGTAGCCATGAAGCGCACGAGGGAT
GAGGACGAGGATCAAGGGGGCGCGAACGAGGGAAGCGCTGTTCAAGCCAC
CGCCAGCACAAGCAGCGCGAGCGCCATCAGCTCGCGGCCCAAGTGTCCCT
ACCTCGACACCGTCAATCGCTCCTACCTCGATTTCGACTTCGAAAAAGTG
TGCTCTGTCTCCCTATCAAACATGAATATTTATGCCTGCCTTGTCTGCGG
AAAGTTTTTTCAAGGCCGTGGCCCTCGCACACAAGCGCATACCCACTCCG
TCCAAGCCTTCCACCACGTATTTATGAATCTGCACAACGCCCGCATTTAC
TGCTTACCCGACAATTATGAGGTGTTGGACTCGTCGTTGGATGATATCAA
ACGGGCCTTGTTTCCTTCCTTTCCTCCCTCGGACATCGCCCGCTTGGACA
GCAATACCACCCTGGTAAGGGACGTTCATGGCGTGTCCTTCCTACCCGGA
TTTATTGGATTGAACAATTTGAAAAACACGGATTACGTCAACGTAGTCCT
TCAAGCCCTTGCCCATATCGTCCCTCTTCGGGATTTTTTCCTTCAACCCT
CTCTGTACCAAGACGGCGTCGGCGGCGAAGCAATAGCAGCAACAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGGACGAAAGCCCACTTCCAACTCGT
GTTGCTATTTGGGGAGGTCATGAGGAAGTTGTGGAGTAAGTATAATTTCA
AGAGTACGGTGTCCCCACACGATTTCCTCCAGGAGGTGGTGGGCGCGAGT
GGCAAGAGATTCAAGATCGGGAAGCAGGGGGAGGCGGCTGAGTTCTTGTC
GTGGTTGCTCCACCACTTACACGTCGGGTTGGTGGGGAGAGAGGGAAAGA
AGAAGGGGAACAAGGGAGGTAGTAGCGTGATTTTGGAGTGCCTCCAGGGC
GAAATAAAAGTGATGACGCAGACGAAAGTGAAAAAGATATTGACCTTGGG
AGGGGGGAAGGCAGGGAGAGAGGACGAGGAGGATGATGGAACGGGGCGGA
ATGTCGGCCGAGGAGGGGAGGATGATGTAGCCGAGATAGGGGAAGGAGAG
TGGGTGGAGACTGTGGCAAAGGCGCCGTTTTTATTTTTGACGGTTAACAT
ACCTCAGACCCCTTTGTTCAAGGACTCGCAGGGGGGGGTGATCATCCCGC
AGGTCCCTCTTTACAGTGTGTTAGAAAAGTTCAACGGGAGAAAAGTAGTG
GATGTTGTGAAAGGAGGGGTTCACACGCGGAAGAAATATTGGATCACACG
CCTCCCACGATACCTGATCCTGAGCTTGGCCCGATTGACACGGAACCATT
TTTTCGTGGAAAAAAACCCGACGATTGTGAATTTTCCCGTTAAGAATTTG
GAGATGAAGGATTATTTTTTCCCGGACGAGGGCGGGGAGGAGGGAGGGAA
GGGAGGATTGCCTACGGAGGAGGAATTGGCCGTGATGAGCGTAGGGGAAT
TGAAGGCTTTTGTGCTGGCGCATGGGGGGGGAGGGGCCGCAGGGCAGGTG
AGGGGTGCGGTAGAGAAAGCGGAATTGGTAGAAATTGCGCGAAGGGTTTT
ACTAGAGATCGGAGGGACGAAATATGACCTTGTTGCGAATGTGGTGCATG
ATTCCCCGCCGGGACAGGAGAAAAAGGAGGCGACTTCTCGAGGGGAGGAT
TCTGGAGTGCCACAGGGGACATATAGGGTGCATGTCTTTAACCGGGCTTC
GGATCAGTGGTATGAGATCCAAGATTTGCACGTTCAGGAGACGCTGCCTC
AATTGATTACGATTAGTGAGAGTTGTTTATTGATTTATGAGAAGAAGGGG
TTGGTGCATGACTGGCAGGCGACCAGAGAGGTGGCGAGTTCGGTGGCAGC
GGCCACGGCGGGAAAGGGCGGACAGTGAGGAGGAGGGATCTGGAAATGAA
GGTGATGGAACTGCTGGTATATGAGTTGAGAGGGAGAGGCGTGTTCAAAT
TGGTAAATAAGGCGCGTGTGCGCAGGCAGCGACCATACAGAGAGGGATGA
CAGGGGTGGAAGGAAAGGTTTGAGGGTTGGTAGGTGTAATAATAGGGGAA
CAGAGAGGGATGAAAGAGAGGGAGAAGACGACAAGAATCAAATGCAAAGA
AATACAAACAAAGCGT back to topprotein sequence of NO01G03990.1 >NO01G03990.1-protein ID=NO01G03990.1-protein|Name=NO01G03990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=701bp
MRTEHIALTKGCTWMVADNSRRGEARALAVAGAHAARWASSLTTALFTSG
PPAFTHILHTPQNTPRRVAMKRTRDEDEDQGGANEGSAVQATASTSSASA
ISSRPKCPYLDTVNRSYLDFDFEKVCSVSLSNMNIYACLVCGKFFQGRGP
RTQAHTHSVQAFHHVFMNLHNARIYCLPDNYEVLDSSLDDIKRALFPSFP
PSDIARLDSNTTLVRDVHGVSFLPGFIGLNNLKNTDYVNVVLQALAHIVP
LRDFFLQPSLYQDGVGGEAIAATGGGGGGGGGGGTKAHFQLVLLFGEVMR
KLWSKYNFKSTVSPHDFLQEVVGASGKRFKIGKQGEAAEFLSWLLHHLHV
GLVGREGKKKGNKGGSSVILECLQGEIKVMTQTKVKKILTLGGGKAGRED
EEDDGTGRNVGRGGEDDVAEIGEGEWVETVAKAPFLFLTVNIPQTPLFKD
SQGGVIIPQVPLYSVLEKFNGRKVVDVVKGGVHTRKKYWITRLPRYLILS
LARLTRNHFFVEKNPTIVNFPVKNLEMKDYFFPDEGGEEGGKGGLPTEEE
LAVMSVGELKAFVLAHGGGGAAGQVRGAVEKAELVEIARRVLLEIGGTKY
DLVANVVHDSPPGQEKKEATSRGEDSGVPQGTYRVHVFNRASDQWYEIQD
LHVQETLPQLITISESCLLIYEKKGLVHDWQATREVASSVAAATAGKGGQ
* back to topmRNA from alignment at chr1:1064193..1066978+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03990.1 ID=NO01G03990.1|Name=NO01G03990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2786bp|location=Sequence derived from alignment at chr1:1064193..1066978+ (Nannochloropsis oceanica)
CATGCGTGCAGGTCCATGTGATGCTATTGCATCTCCCTCCCTCCACAAAT
ACGCCGCATCGAGCCTTCCTGCCGCATGCGCACTGAGCATATAGCTCTCA
CAAAAGGGTGCACGTGGATGGTGGCCGATAATTCGAGAAGAGGGGAGGCC
AGGGCATTAGCAGTGGCTGGAGCTCACGCGGCCCGCTGGGCATCATCGCT
AACGACTGCTCTCTTCACTTCCGGTCCTCCCGCTTTTACCCACATCTTGC
ACACACCACAGAACACGCCACGCCGCGTAGCCATGAAGCGCACGAGGGAT
GAGGACGAGGATCAAGGGGGCGCGAACGAGGGAAGCGCTGTTCAAGGTAC
GTGCAAAGTTGTAGTATGGTTAGGTGAAGAGGGAGGGTGGAGAAGGTGCA
GGGCAGCGTGACGGGTAAGATGGAGGAAGAAGCAAATAATGCGGCCAAGC
ATGTATCTAGACTGCTAGGTGACGGTGGGGGTTGCTTTGTGCGGAGAAGA
TAGACGCTGCTGTTATGGTAAAGATGGTAAGCTGCCCACAGAAGAAGCAC
CAGACAGGCACCGCAGAAAAGCAACGCGACGCTTAACGATACGCCCTTGT
CATCTCGTGCTTTCGTCTGCGCTGAGCGTACGATGCTTCACAATAACACT
TCCACTTCTCCACACTCAAGTACCAAAACCAACCACCTCTCCCTTCCCCC
TATACCCAACCAACAGCCACCGCCAGCACAAGCAGCGCGAGCGCCATCAG
CTCGCGGCCCAAGTGTCCCTACCTCGACACCGTCAATCGCTCCTACCTCG
ATTTCGACTTCGAAAAAGTGTGCTCTGTCTCCCTATCAAACATGAATATT
TATGCCTGCCTTGTCTGCGGAAAGTTTTTTCAAGGCCGTGGCCCTCGCAC
ACAAGCGCATACCCACTCCGTCCAAGCCTTCCACCACGTATTTATGAATC
TGCACAACGCCCGCATTTACTGCTTACCCGACAATTATGAGGTGTTGGAC
TCGTCGTTGGATGATATCAAACGGGCCTTGTTTCCTTCCTTTCCTCCCTC
GGACATCGCCCGCTTGGACAGCAATACCACCCTGGTAAGGGACGTTCATG
GCGTGTCCTTCCTACCCGGATTTATTGGATTGAACAATTTGAAAAACACG
GATTACGTCAACGTAGTCCTTCAAGCCCTTGCCCATATCGTCCCTCTTCG
GGATTTTTTCCTTCAACCCTCTCTGTACCAAGACGGCGTCGGCGGCGAAG
CAATAGCAGCAACAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGACG
AAAGCCCACTTCCAACTCGTGTTGCTATTTGGGGAGGTCATGAGGAAGTT
GTGGAGTAAGTATAATTTCAAGAGTACGGTGTCCCCACACGATTTCCTCC
AGGAGGTGGTGGGCGCGAGTGGCAAGAGATTCAAGATCGGGAAGCAGGGG
GAGGCGGCTGAGTTCTTGTCGTGGTTGCTCCACCACTTACACGTCGGGTT
GGTGGGGAGAGAGGGAAAGAAGAAGGGGAACAAGGGAGGTAGTAGCGTGA
TTTTGGAGTGCCTCCAGGGCGAAATAAAAGTGATGACGCAGACGAAAGTG
AAAAAGATATTGACCTTGGGAGGGGGGAAGGCAGGGAGAGAGGACGAGGA
GGATGATGGAACGGGGCGGAATGTCGGCCGAGGAGGGGAGGATGATGTAG
CCGAGATAGGGGAAGGAGAGTGGGTGGAGACTGTGGCAAAGGCGCCGTTT
TTATTTTTGACGGTTAACATACCTCAGACCCCTTTGTTCAAGGACTCGCA
GGGGGGGGTGATCATCCCGCAGGTCCCTCTTTACAGTGTGTTAGAAAAGT
TCAACGGGAGAAAAGTAGTGGATGTTGTGAAAGGAGGGGTTCACACGCGG
AAGAAATATTGGATCACACGCCTCCCACGATACCTGATCCTGAGCTTGGC
CCGATTGACACGGAACCATTTTTTCGTGGAAAAAAACCCGACGATTGTGA
ATTTTCCCGTTAAGAATTTGGAGATGAAGGATTATTTTTTCCCGGACGAG
GGCGGGGAGGAGGGAGGGAAGGGAGGATTGCCTACGGAGGAGGAATTGGC
CGTGATGAGCGTAGGGGAATTGAAGGCTTTTGTGCTGGCGCATGGGGGGG
GAGGGGCCGCAGGGCAGGTGAGGGGTGCGGTAGAGAAAGCGGAATTGGTA
GAAATTGCGCGAAGGGTTTTACTAGAGATCGGAGGGACGAAATATGACCT
TGTTGCGAATGTGGTGCATGATTCCCCGCCGGGACAGGAGAAAAAGGAGG
CGACTTCTCGAGGGGAGGATTCTGGAGTGCCACAGGGGACATATAGGGTG
CATGTCTTTAACCGGGCTTCGGATCAGTGGTATGAGATCCAAGATTTGCA
CGTTCAGGAGACGCTGCCTCAATTGATTACGATTAGTGAGAGTTGTTTAT
TGATTTATGAGAAGAAGGGGTTGGTGCATGACTGGCAGGCGACCAGAGAG
GTGGCGAGTTCGGTGGCAGCGGCCACGGCGGGAAAGGGCGGACAGTGAGG
AGGAGGGATCTGGAAATGAAGGTGATGGAACTGCTGGTATATGAGTTGAG
AGGGAGAGGCGTGTTCAAATTGGTAAATAAGGCGCGTGTGCGCAGGCAGC
GACCATACAGAGAGGGATGACAGGGGTGGAAGGAAAGGTTTGAGGGTTGG
TAGGTGTAATAATAGGGGAACAGAGAGGGATGAAAGAGAGGGAGAAGACG
ACAAGAATCAAATGCAAAGAAATACAAACAAAGCGT back to topCoding sequence (CDS) from alignment at chr1:1064193..1066978+ >NO01G03990.1 ID=NO01G03990.1|Name=NO01G03990.1|organism=Nannochloropsis oceanica|type=CDS|length=2103bp|location=Sequence derived from alignment at chr1:1064193..1066978+ (Nannochloropsis oceanica)
ATGCGCACTGAGCATATAGCTCTCACAAAAGGGTGCACGTGGATGGTGGC
CGATAATTCGAGAAGAGGGGAGGCCAGGGCATTAGCAGTGGCTGGAGCTC
ACGCGGCCCGCTGGGCATCATCGCTAACGACTGCTCTCTTCACTTCCGGT
CCTCCCGCTTTTACCCACATCTTGCACACACCACAGAACACGCCACGCCG
CGTAGCCATGAAGCGCACGAGGGATGAGGACGAGGATCAAGGGGGCGCGA
ACGAGGGAAGCGCTGTTCAAGCCACCGCCAGCACAAGCAGCGCGAGCGCC
ATCAGCTCGCGGCCCAAGTGTCCCTACCTCGACACCGTCAATCGCTCCTA
CCTCGATTTCGACTTCGAAAAAGTGTGCTCTGTCTCCCTATCAAACATGA
ATATTTATGCCTGCCTTGTCTGCGGAAAGTTTTTTCAAGGCCGTGGCCCT
CGCACACAAGCGCATACCCACTCCGTCCAAGCCTTCCACCACGTATTTAT
GAATCTGCACAACGCCCGCATTTACTGCTTACCCGACAATTATGAGGTGT
TGGACTCGTCGTTGGATGATATCAAACGGGCCTTGTTTCCTTCCTTTCCT
CCCTCGGACATCGCCCGCTTGGACAGCAATACCACCCTGGTAAGGGACGT
TCATGGCGTGTCCTTCCTACCCGGATTTATTGGATTGAACAATTTGAAAA
ACACGGATTACGTCAACGTAGTCCTTCAAGCCCTTGCCCATATCGTCCCT
CTTCGGGATTTTTTCCTTCAACCCTCTCTGTACCAAGACGGCGTCGGCGG
CGAAGCAATAGCAGCAACAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GGACGAAAGCCCACTTCCAACTCGTGTTGCTATTTGGGGAGGTCATGAGG
AAGTTGTGGAGTAAGTATAATTTCAAGAGTACGGTGTCCCCACACGATTT
CCTCCAGGAGGTGGTGGGCGCGAGTGGCAAGAGATTCAAGATCGGGAAGC
AGGGGGAGGCGGCTGAGTTCTTGTCGTGGTTGCTCCACCACTTACACGTC
GGGTTGGTGGGGAGAGAGGGAAAGAAGAAGGGGAACAAGGGAGGTAGTAG
CGTGATTTTGGAGTGCCTCCAGGGCGAAATAAAAGTGATGACGCAGACGA
AAGTGAAAAAGATATTGACCTTGGGAGGGGGGAAGGCAGGGAGAGAGGAC
GAGGAGGATGATGGAACGGGGCGGAATGTCGGCCGAGGAGGGGAGGATGA
TGTAGCCGAGATAGGGGAAGGAGAGTGGGTGGAGACTGTGGCAAAGGCGC
CGTTTTTATTTTTGACGGTTAACATACCTCAGACCCCTTTGTTCAAGGAC
TCGCAGGGGGGGGTGATCATCCCGCAGGTCCCTCTTTACAGTGTGTTAGA
AAAGTTCAACGGGAGAAAAGTAGTGGATGTTGTGAAAGGAGGGGTTCACA
CGCGGAAGAAATATTGGATCACACGCCTCCCACGATACCTGATCCTGAGC
TTGGCCCGATTGACACGGAACCATTTTTTCGTGGAAAAAAACCCGACGAT
TGTGAATTTTCCCGTTAAGAATTTGGAGATGAAGGATTATTTTTTCCCGG
ACGAGGGCGGGGAGGAGGGAGGGAAGGGAGGATTGCCTACGGAGGAGGAA
TTGGCCGTGATGAGCGTAGGGGAATTGAAGGCTTTTGTGCTGGCGCATGG
GGGGGGAGGGGCCGCAGGGCAGGTGAGGGGTGCGGTAGAGAAAGCGGAAT
TGGTAGAAATTGCGCGAAGGGTTTTACTAGAGATCGGAGGGACGAAATAT
GACCTTGTTGCGAATGTGGTGCATGATTCCCCGCCGGGACAGGAGAAAAA
GGAGGCGACTTCTCGAGGGGAGGATTCTGGAGTGCCACAGGGGACATATA
GGGTGCATGTCTTTAACCGGGCTTCGGATCAGTGGTATGAGATCCAAGAT
TTGCACGTTCAGGAGACGCTGCCTCAATTGATTACGATTAGTGAGAGTTG
TTTATTGATTTATGAGAAGAAGGGGTTGGTGCATGACTGGCAGGCGACCA
GAGAGGTGGCGAGTTCGGTGGCAGCGGCCACGGCGGGAAAGGGCGGACAG
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