NO01G03270.3, NO01G03270.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G03270.3
Unique Name	NO01G03270.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1884
Alignment location	chr1:858215..860537 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:858215..860537 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G03270.3 vs.
Match: EJK46875.1 (hypothetical protein THAOC_34435 [Thalassiosira oceanica])

HSP 1 Score: 87.8 bits (216), Expect = 7.900e-14
Identity = 77/263 (29.28%), Postives = 126/263 (47.91%), Query Frame = 0

Query:   40 YKLSISPCGK---TVVGEA----GMAKTLVTVSNPTSDPGLGG-VAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSPEKQAEARQEH---GQVVMDKFQVVYLPLNKAVCDSF------EKSGD----VKEQVGQLERLWQLADKRAVCKLTFEVEIALQEET-STQDLRNTPSTSWAEKNGKPSSAPSSVGE-LHSPGSVMHFSLTSKQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRELSSHADVGKLG 280
            Y LSISP       +  +A    G ++ ++T+++P  D   GG +AFK+KTT+P+RYLVRPNQ I+  G    V+IL+  + + + R  +   GQ  +D  +  +L  + AV D F      E  G+     KE V  L  +W  A         F  ++ ++     +     TP+ S +  +      P++      +    M       +++  R++YD+LV F+V LT ERD+L N L+  K  L RE ++   + K G
Sbjct:    6 YALSISPDSALQFNLTPDADNGDGASRCIMTLTHPRKDGKGGGYLAFKVKTTQPRRYLVRPNQGIVAPGSSETVSILLVDKDRQQLRATYNRLGQSALDHSKDKFLVQSCAVPDDFAAQFKNESRGEGGQYKKELVDALTSMWNKATSGGSEISVFNKKLHVKHSVGGSAGSGGTPAASASSPSSSGGGLPATFDSGKRNNADKMSPDQLQDEVSSLRRKYDELVAFSVNLTAERDILNNTLEQTKRDLNRESATRTALEKQG 268

The following BLAST results are available for this feature:

BLAST of NO01G03270.3 vs.

BLAST of NO01G03270.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EJK46875.1	7.900e-14	29.28	hypothetical protein THAOC_34435 [Thalassiosira oc...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G03270	NO01G03270	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G03270.3	NO01G03270.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G03270.3.cds1	NO01G03270.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G03270.3.cds2	NO01G03270.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G03270.3.cds3	NO01G03270.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G03270.3.cds4	NO01G03270.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G03270.3.cds5	NO01G03270.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:858215..860537+
coding sequence from alignment at chr1:858215..860537+

mRNA sequence

>NO01G03270.3 ID=NO01G03270.3|Name=NO01G03270.3|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp
GCTGCTCCTTCAGCTGCGCCTGGAGGATCAGTATTTCTGCCTGCAAGCGA
TCCTTGTCGATTTGGAGCGCCCTGACCTCCGCAGCTTTGCATTCTGAAAA
TTATTTGTGAGGGCAGATAGGATATTTATCACATAGATTGTCGGAAGCTC
TCCTGAAAGGTACTTTGAGCACTATTTTAAAAGCGGCACGGGTGTGGAGA
AGTACCTATCTGGACTTTGGGGTCAGGTCCGGCAGGAGAGTCAGCATGTG
TCGTAGTGGGCGCTGTTTTTGATAATGCCGTCTTCTTCTTGACGACAAGT
TTTTTCATGGTGGCAGGCATTGTTTTGTCTGTGGTTGTGGAAAGAGGGAG
AATTTGTTGTGAAATTTAGGGAGGGCGGAAGGCGGGGAAGAAGTTGAAGA
GAGAAACGTACTCTCCGAGTGAGTCACGAGACAAGATCTCAGAGCAACAG
CACGCCCAGAAGTCGATGCGAGCCGCACACCACTTATACATGCATGACAT
ATGCCGCCAAAACACAACTTACACGCCACAGGCTATACGCCACGGGACTT
GGTAGGGTAGAGCATTTATCCATCCTGCGGGGCCCATCCGAGAGCAACGT
AAAAAAGCATGGCAAGTGGCAGTGCCATCGCCCCTTCCCTCCTGCAGCCG
CCCCCCCATGTAAGCACTGTTCGTGAGCAAGATGTGCACCATCGCCCATT
CCTCACCCGCACATATTCACACAACTACAAGCTGTCAATTTCTCCGTGTG
GCAAGACAGTTGTGGGCGAAGCAGGTATGGCCAAGACTCTCGTGACCGTG
AGTAATCCCACGTCGGACCCGGGACTCGGAGGTGTGGCTTTCAAAATCAA
GACCACAAAGCCAAAGCGATACCTTGTGCGTCCCAATCAAAGCATCCTTA
TGGCAGGGGAGCGAAGAGAAGTGGCCATCCTCATGTCTCCCGAGAAACAG
GCGGAAGCACGACAGGAGCACGGGCAAGTCGTAATGGACAAGTTCCAAGT
GGTGTACTTGCCTCTGAACAAAGCGGTCTGTGATAGCTTTGAAAAATCAG
GAGATGTCAAGGAGCAGGTAGGGCAGCTAGAGCGGCTTTGGCAGCTAGCC
GACAAGCGAGCTGTATGTAAGCTGACGTTTGAAGTGGAAATAGCCTTACA
AGAGGAAACCTCTACCCAAGATTTGCGGAATACCCCCTCCACCTCTTGGG
CAGAAAAAAATGGCAAGCCCTCGTCCGCTCCGTCCTCGGTGGGCGAGCTG
CACAGCCCTGGGTCCGTCATGCATTTTTCCTTAACGTCCAAGCAGATGAC
AGAATATCGGCAGCGATACGACGATCTGGTGACGTTCACGGTGGCACTTA
CCAATGAAAGGGACCTGCTCATCAACGCCCTGGACTCCGTCAAACTGCAG
CTACGGCGAGAGTTGTCAAGCCATGCCGACGTGGGAAAATTGGGACCAGA
GGATGCGGTAAACTATGAGCTTCTCAACCTTCACAAGCGACGCCGCTCCA
GGGCCTCGTCCTTCTCACCCGTCTCAATCATCCCCGGAATCGCCTCCCAC
GCCCACAAGAGTCCCTCTGCACTCGATGCTCGCCATGAGAAATGCAACCT
CTACTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTATGGCTG
AAAGGGGCAAAGTGTCAAGAAAAATGCTGCTAGTCCTGTTGCTTGTGGCG
ATATTCTTGGGACACAAAGTGAGGGAAAATTTTGGGTTGTGGTGGTGGTT
CTTCTAAGTAGACGGGAAAAATGAATGAGCGAGTGAGCAATCGAGAGAGA
ACGAAAGAGAGACCGAGATAGAGGAAGGAAGAAGAGATGATTTTGAGTAC
GTACGCAGAGAAAGACCGCGAAGAATGTAAAATC

protein sequence of NO01G03270.3

>NO01G03270.3-protein ID=NO01G03270.3-protein|Name=NO01G03270.3|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MASGSAIAPSLLQPPPHVSTVREQDVHHRPFLTRTYSHNYKLSISPCGKT
VVGEAGMAKTLVTVSNPTSDPGLGGVAFKIKTTKPKRYLVRPNQSILMAG
ERREVAILMSPEKQAEARQEHGQVVMDKFQVVYLPLNKAVCDSFEKSGDV
KEQVGQLERLWQLADKRAVCKLTFEVEIALQEETSTQDLRNTPSTSWAEK
NGKPSSAPSSVGELHSPGSVMHFSLTSKQMTEYRQRYDDLVTFTVALTNE
RDLLINALDSVKLQLRRELSSHADVGKLGPEDAVNYELLNLHKRRRSRAS
SFSPVSIIPGIASHAHKSPSALDARHEKCNLYCSSSSSSSSSSSSMAERG
KVSRKMLLVLLLVAIFLGHKVRENFGLWWWFF*

mRNA from alignment at chr1:858215..860537+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G03270.3 ID=NO01G03270.3|Name=NO01G03270.3|organism=Nannochloropsis oceanica|type=mRNA|length=2323bp|location=Sequence derived from alignment at chr1:858215..860537+ (Nannochloropsis oceanica)
GCTGCTCCTTCAGCTGCGCCTGGAGGATCAGTATTTCTGCCTGCAAGCGA
TCCTTGTCGATTTGGAGCGCCCTGACCTCCGCAGCTTTGCATTCTGAAAA
TTATTTGTGAGGGCAGATAGGATATTTATCACATAGATTGTCGGAAGCTC
TCCTGAAAGGTACTTTGAGCACTATTTTAAAAGCGGCACGGGTGTGGAGA
AGTACCTATCTGGACTTTGGGGTCAGGTCCGGCAGGAGAGTCAGCATGTG
TCGTAGTGGGCGCTGTTTTTGATAATGCCGTCTTCTTCTTGACGACAAGT
TTTTTCATGGTGGCAGGCATTGTTTTGTCTGTGGTTGTGGAAAGAGGGAG
AATTTGTTGTGAAATTTAGGGAGGGCGGAAGGCGGGGAAGAAGTTGAAGA
GAGAAACGTACTCTCCGAGTGAGTCACGAGACAAGATCTCAGAGCAACAG
CACGCCCAGAAGTCGATGCGAGCCGCACACCACTTATACATGCATGACAT
ATGCCGCCAAAACACAACTTACACGCCACAGGCTATACGCCACGGGACTT
GGTAGGGTAGAGCATTTATCCATCCTGCGGGGCCCATCCGAGAGCAACGT
AAAAAAGCATGGCAAGTGGCAGTGCCATCGCCCCTTCCCTCCTGCAGCCG
CCCCCCCATGTAAGCACTGTTCGTGAGCAAGATGTGCACCATCGCCCATT
CCTCACCCGCACATATTCACACAACTACAAGCTGTCAATTTCTCCGTGTG
GCAAGACAGTTGTGGGCGAAGCAGGTATGGCCAAGACTCTCGTGACCGTG
AGTAATCCCACGTCGGACCCGGGACTCGGAGGTGTGGCTTTCAAAATCAA
GACCACAAAGCCAAAGCGATACCTTGTGCGTCCCAATCAAAGCATCCTTA
TGGCAGGGGAGCGAAGAGAAGTGGCCATCCTCATGTCTCCCGAGAAACAG
GCGGAAGCACGACAGGAGCACGGGCAAGTCGTAATGGACAAGTTCCAAGT
GGTGTACTTGCCTCTGAACAAAGCGGTCTGTGATAGCTTTGAAAAATCAG
GAGATGTCAAGGAGCAGGTACGGAGTATATGAAATGACTTACTTTTCGGG
TCTATTTGGCTTCATCTGATGACCTTCACTAACGTCCGTCCCGTTTTTTA
CGAATGTTCCCTTACCGCCCTTCTGTCGACTTCTTTTAAACGTAGGTAGG
GCAGCTAGAGCGGCTTTGGCAGCTAGCCGACAAGCGAGCTGTATGTAAGC
TGACGTTTGAAGTGGAAATAGCCTTACAAGAGGAAACCTCTACCCAAGAT
TTGCGGAATACCCCCTCCACCTCTTGGGCAGAAAAAAATGGCAAGCCCTC
GTCCGCTCCGTCCTCGGTGGGCGAGCTGCACAGCCCTGGGTCCGTCATGC
ATTTTTCCTTAACGTCCAAGCAGGTAGGCTATGTTTAAATTTGTAAGTCA
AAGGGAAAATCCATTAACTCATATCTTTCTCTATTGATTTTTTACTCCCT
TGCAGATGACAGAATATCGGCAGCGATACGACGATCTGGTGACGTTCACG
GTCAGTGAATCCTCCCTTTGTCCCCTTTCTCATTTTTGCTGTCTATACTG
CCGCTTTTCATTTTTGTTGCACGCCAATAACAACCCATTCTCCACTTCTA
CTCCAGGTGGCACTTACCAATGAAAGGGACCTGCTCATCAACGCCCTGGA
CTCCGTCAAACTGCAGCTACGGCGAGAGTTGTCAAGCCATGCCGACGTGG
GAAAATTGGGACCAGAGGATGCGGTAAACTATGAGCTTCTCAACCTTCAC
AAGCGACGCCGGTAAGAGAAAAATACCAATCTTGCGTCGGTTGATTCGTG
GACGTGAACAACTGCGATCAATGCTTAACTTTATTGTGCCATATTTCAAT
TCTAAACCCCACATACCAATCTTCTTCTACGAAGCTCCAGGGCCTCGTCC
TTCTCACCCGTCTCAATCATCCCCGGAATCGCCTCCCACGCCCACAAGAG
TCCCTCTGCACTCGATGCTCGCCATGAGAAATGCAACCTCTACTGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTATGGCTGAAAGGGGCAAA
GTGTCAAGAAAAATGCTGCTAGTCCTGTTGCTTGTGGCGATATTCTTGGG
ACACAAAGTGAGGGAAAATTTTGGGTTGTGGTGGTGGTTCTTCTAAGTAG
ACGGGAAAAATGAATGAGCGAGTGAGCAATCGAGAGAGAACGAAAGAGAG
ACCGAGATAGAGGAAGGAAGAAGAGATGATTTTGAGTACGTACGCAGAGA
AAGACCGCGAAGAATGTAAAATC

Coding sequence (CDS) from alignment at chr1:858215..860537+

>NO01G03270.3 ID=NO01G03270.3|Name=NO01G03270.3|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at chr1:858215..860537+ (Nannochloropsis oceanica)
ATGGCAAGTGGCAGTGCCATCGCCCCTTCCCTCCTGCAGCCGCCCCCCCA
TGTAAGCACTGTTCGTGAGCAAGATGTGCACCATCGCCCATTCCTCACCC
GCACATATTCACACAACTACAAGCTGTCAATTTCTCCGTGTGGCAAGACA
GTTGTGGGCGAAGCAGGTATGGCCAAGACTCTCGTGACCGTGAGTAATCC
CACGTCGGACCCGGGACTCGGAGGTGTGGCTTTCAAAATCAAGACCACAA
AGCCAAAGCGATACCTTGTGCGTCCCAATCAAAGCATCCTTATGGCAGGG
GAGCGAAGAGAAGTGGCCATCCTCATGTCTCCCGAGAAACAGGCGGAAGC
ACGACAGGAGCACGGGCAAGTCGTAATGGACAAGTTCCAAGTGGTGTACT
TGCCTCTGAACAAAGCGGTCTGTGATAGCTTTGAAAAATCAGGAGATGTC
AAGGAGCAGGTAGGGCAGCTAGAGCGGCTTTGGCAGCTAGCCGACAAGCG
AGCTGTATGTAAGCTGACGTTTGAAGTGGAAATAGCCTTACAAGAGGAAA
CCTCTACCCAAGATTTGCGGAATACCCCCTCCACCTCTTGGGCAGAAAAA
AATGGCAAGCCCTCGTCCGCTCCGTCCTCGGTGGGCGAGCTGCACAGCCC
TGGGTCCGTCATGCATTTTTCCTTAACGTCCAAGCAGATGACAGAATATC
GGCAGCGATACGACGATCTGGTGACGTTCACGGTGGCACTTACCAATGAA
AGGGACCTGCTCATCAACGCCCTGGACTCCGTCAAACTGCAGCTACGGCG
AGAGTTGTCAAGCCATGCCGACGTGGGAAAATTGGGACCAGAGGATGCGG
TAAACTATGAGCTTCTCAACCTTCACAAGCGACGCCGCTCCAGGGCCTCG
TCCTTCTCACCCGTCTCAATCATCCCCGGAATCGCCTCCCACGCCCACAA
GAGTCCCTCTGCACTCGATGCTCGCCATGAGAAATGCAACCTCTACTGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTATGGCTGAAAGGGGC
AAAGTGTCAAGAAAAATGCTGCTAGTCCTGTTGCTTGTGGCGATATTCTT
GGGACACAAAGTGAGGGAAAATTTTGGGTTGTGGTGGTGGTTCTTCTAA

Synonyms

Publications