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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:817503..819717 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03100.1 vs.
Match: EWM29242.1 (d-glycerate 3-kinase [Nannochloropsis gaditana]) HSP 1 Score: 432.6 bits (1111), Expect = 1.300e-117 Identity = 223/391 (57.03%), Postives = 275/391 (70.33%), Query Frame = 0
Query: 1 MRAGSNSISSRGSSNGGGWRERDRVLSYARQSPIYPKCLPATTATDPSPLPPSSQEWVDKGIFMKSQLSVPPSTPMQSDVGIRIFHLYLPLYFWLRGLVLRSRCRNRPFEPPSPLQQQQQQQQQQRQQRQQGLQPQHQQQRCPLVVGINAPQGAGKTTLVNFCRALFKLDGLRCVVLSIDDFYLTNKEQRAVAAKHKGNPLLQYRGNAGTHDVALGRETILKCISAREGENITVPFYDKSLCGGWGDRAPRERWPVVEGPVDVILLEGWMLGFRPWPSDGEEGGRSEEGLKDVNNYLGSYQEWHELVDAWVIVQVEDLEVIYKWRLEAERKMREKKGKEGSMTDEEVGDFVSRFLPAYRAYLQHSLYAADALPSEKPVLRVVIDCDRKPKG 392
M AGS +S G G W+ERD VL++ARQSPIY KC + +P+ LP S+QEWVDKG+F++ +LSV +TP+ S+ GIRIFH YLPLYFWLR LV RCR P Q +P Q R +VVG+NAPQGAGKTTLVN CRALF LDGL CV LSIDDFYLTN +Q+ +AA+H GN LL++RGNAGTHDVALGR+TI++C+ A EGE + +P YDKSL G GDRA R++WPVVEG +DV+LLEGWMLGFRP P D + + E GL VN LG Y++WH LVDAW ++QVEDL +I WRLEAER MR ++G EG MTD +V DFVSRF+P+Y A+ +HS+Y D L +KPVLR+ D +R P G
Sbjct: 20 MYAGSCGFASGGR---GDWQERDDVLAFARQSPIYDKCF---SEQNPANLP-SAQEWVDKGLFLRDKLSVGQATPINSNFGIRIFHFYLPLYFWLRYLV---RCRRGQDLPTGT---------------QNNSEPLCSQPRT-IVVGLNAPQGAGKTTLVNLCRALFSLDGLSCVALSIDDFYLTNDDQQRLAAQHSGNRLLEHRGNAGTHDVALGRDTIIQCVQAGEGEKVALPRYDKSLGAGRGDRAHRQQWPVVEGRIDVVLLEGWMLGFRPLPPDAPQ-LQKEAGLAQVNANLGEYEQWHALVDAWAVIQVEDLSIIASWRLEAERGMRRERGAEGGMTDAQVRDFVSRFMPSYTAFSEHSIYNEDELSRKKPVLRIFFDKERNPTG 383
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03100.1 ID=NO01G03100.1|Name=NO01G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1855bp ACTTGCTTCAAGTCAGGCGGCAACGTCTACATCTCGCCTCAAACCCACAT CCAACAGATAAATAATCCCCAAGTCACGCTTCGTCAAGGAAAAAGTGGCA ACGTTGCCCTGCACCGTAGTTTGAGGGTGGCCAGAATAGCCGGGGCGTTG GTTAGCGTCGTGGCCGGAGAGCCACCAAGCTCGCTTCCCCCCTCCTCCCC CTCTCTCACTGCAATCTCTCAGTCCTCATCCCACGCTATCTCTACCAGGC CACACTGCCCAATGCGGCGCTTGCGGATGCCGTGTATTCAATAGTTGGTG TCATTCCCAGTGGCACATTCCTGACGATTTTGGTTGTAAACGAGATCAGG AGCAGGAGCTGCAAAAACACTCCCCCGTGCTTGTGGGAGTCGCAAGCAAG TATAGAAGGCTGCACATGCACAAGAGCAGCACCATTCTACAAAGTTACAC TTCTGTGAAAATTGTATTCCTATCCTCCGCCCACATCCCACCGCACACAG AGTTCAGGAGCAGCAGAAGCAGCAGAAGGCATACACCAGGACAAGGGACT AAGGAAAGGTGGCATTTACCGGCTTTGTGATTGCCTGGAGGGTGGTCGGT CTGAGGAGACTCCGTCTCATGCGGGCAGGATCTAACAGCATTAGCAGTCG GGGTAGTAGCAATGGCGGGGGTTGGCGAGAGAGAGATCGAGTGCTGTCTT ATGCACGCCAAAGCCCCATCTATCCCAAGTGCTTGCCAGCAACGACAGCA ACAGACCCGAGCCCTCTTCCTCCCTCCAGCCAAGAATGGGTGGATAAGGG CATCTTCATGAAAAGCCAGCTCTCCGTTCCACCATCCACGCCAATGCAGT CTGACGTGGGCATCCGGATTTTTCATTTATATTTGCCGCTTTACTTTTGG CTACGCGGCCTCGTGCTGCGGAGTCGATGCCGAAATAGGCCGTTTGAGCC GCCATCACCACTCCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCGACAAC AACGACAACAAGGATTGCAACCACAACACCAGCAGCAGCGCTGTCCTCTC GTCGTGGGTATCAATGCTCCCCAAGGCGCTGGCAAGACGACCCTAGTCAA TTTCTGCCGAGCTCTCTTCAAGCTAGACGGGCTGAGGTGCGTCGTTCTTT CCATTGATGATTTTTATTTAACCAACAAAGAGCAACGAGCCGTAGCGGCA AAGCACAAAGGTAATCCTCTCTTACAATACCGGGGGAATGCTGGGACGCA TGATGTCGCCCTAGGCCGAGAAACCATCTTGAAATGCATTTCCGCTAGGG AAGGAGAGAATATAACAGTTCCTTTTTATGATAAGTCTTTGTGTGGAGGA TGGGGGGATCGAGCACCACGGGAGAGATGGCCAGTGGTGGAGGGCCCTGT GGACGTTATTTTGCTGGAAGGGTGGATGCTTGGATTTAGGCCGTGGCCCT CTGATGGGGAGGAAGGGGGAAGGAGTGAGGAGGGATTGAAGGACGTGAAT AATTACTTGGGCAGCTATCAGGAATGGCACGAGCTGGTCGATGCTTGGGT GATAGTGCAGGTGGAGGACTTAGAGGTAATATACAAGTGGCGGTTGGAGG CGGAACGGAAAATGAGAGAGAAAAAGGGGAAGGAGGGGAGCATGACTGAT GAGGAGGTGGGGGATTTTGTGTCGAGATTCTTGCCGGCCTACAGGGCGTA TTTGCAGCATTCTTTGTATGCTGCTGATGCGTTGCCGTCGGAGAAGCCGG TGTTGCGGGTGGTGATCGATTGTGACAGGAAGCCCAAGGGGTAAGACGAG GAAAGAGGGTAGATACGGAAGAAGACAACAGCTGTAATTTGCATCGAGTT TAAGG back to topprotein sequence of NO01G03100.1 >NO01G03100.1-protein ID=NO01G03100.1-protein|Name=NO01G03100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp MRAGSNSISSRGSSNGGGWRERDRVLSYARQSPIYPKCLPATTATDPSPL PPSSQEWVDKGIFMKSQLSVPPSTPMQSDVGIRIFHLYLPLYFWLRGLVL RSRCRNRPFEPPSPLQQQQQQQQQQRQQRQQGLQPQHQQQRCPLVVGINA PQGAGKTTLVNFCRALFKLDGLRCVVLSIDDFYLTNKEQRAVAAKHKGNP LLQYRGNAGTHDVALGRETILKCISAREGENITVPFYDKSLCGGWGDRAP RERWPVVEGPVDVILLEGWMLGFRPWPSDGEEGGRSEEGLKDVNNYLGSY QEWHELVDAWVIVQVEDLEVIYKWRLEAERKMREKKGKEGSMTDEEVGDF VSRFLPAYRAYLQHSLYAADALPSEKPVLRVVIDCDRKPKG* back to topmRNA from alignment at chr1:817503..819717+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03100.1 ID=NO01G03100.1|Name=NO01G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2215bp|location=Sequence derived from alignment at chr1:817503..819717+ (Nannochloropsis oceanica) ACTTGCTTCAAGTCAGGCGGCAACGTCTACATCTCGCCTCAAACCCACAT
CCAACAGATAAATAATCCCCAAGTCACGCTTCGTCAAGGAAAAAGTGGCA
ACGTTGCCCTGCACCGTAGTTTGAGGGTGGCCAGAATAGCCGGGGCGTTG
GTTAGCGTCGTGGCCGGAGAGCCACCAAGCTCGCTTCCCCCCTCCTCCCC
CTCTCTCACTGCAATCTCTCAGTCCTCATCCCACGCTATCTCTACCAGGC
CACACTGCCCAATGCGGCGCTTGCGGATGCCGTGTATTCAATAGTTGGTG
TCATTCCCAGTGGCACATTCCTGACGATTTTGGTTGTAAACGAGATCAGG
AGCAGGAGCTGCAAAAACACTCCCCCGTGCTTGTGGGAGTCGCAAGCAAG
TATAGAAGGCTGCACATGCACAAGAGCAGCACCATTCTACAAAGTTACAC
TTCTGTGAAAATTGTATTCCTATCCTCCGCCCACATCCCACCGCACACAG
AGTTCAGGAGCAGCAGAAGCAGCAGAAGGCATACACCAGGACAAGGGACT
AAGGAAAGGTGGCATTTACCGGCTTTGTGATTGCCTGGAGGGTGGTCGGT
CTGAGGAGACTCCGTCTCATGCGGGCAGGATCTAACAGCATTAGCAGTCG
GGGTAGTAGCAATGGCGGGGGTTGGCGAGAGAGAGATCGAGTGCTGTCTT
ATGCACGTAAGTACCTACCTCCTACCTCCCTCTCCCTATGTGGATTCGTG
TGTACGAATGGTGTCAGTGATGGCCAATCGCTCAATTAATCATGACTCCT
TCGCTTCTGCGTCTTTTTTACTGAGTTCCTTCTTCCATTCCTCCTTCCTC
TAACAATTTGGCCCTCTGGTTCTACAGGCCAAAGCCCCATCTATCCCAAG
TGCTTGCCAGCAACGACAGCAACAGACCCGAGCCCTCTTCCTCCCTCCAG
CCAAGAATGGGTGGATAAGGGCATCTTCATGAAAAGCCAGCTCTCCGTTC
CACCATCCACGCCAATGCAGTCTGACGTGGGCATCCGGATTTTTCATTTA
TATTTGCCGGTATGTATACATATGAGTGTGTGTGTGTGTCAGTGTGTCAG
TGTGTGTATTGTTGTGTGACAAACAAACAAACAAACAAACAAACGTGTGT
CAGTGTGTGTATTGTTGTTGGAAAGGAAAGGGTTTCTTTTGATTCCATCT
CACTTCTCCAACCCATTTTTCATCTCTCTCTCCTCCTTTGGTCCCCAGCT
TTACTTTTGGCTACGCGGCCTCGTGCTGCGGAGTCGATGCCGAAATAGGC
CGTTTGAGCCGCCATCACCACTCCAGCAGCAGCAACAGCAGCAGCAGCAG
CAGCGACAACAACGACAACAAGGATTGCAACCACAACACCAGCAGCAGCG
CTGTCCTCTCGTCGTGGGTATCAATGCTCCCCAAGGCGCTGGCAAGACGA
CCCTAGTCAATTTCTGCCGAGCTCTCTTCAAGCTAGACGGGCTGAGGTGC
GTCGTTCTTTCCATTGATGATTTTTATTTAACCAACAAAGAGCAACGAGC
CGTAGCGGCAAAGCACAAAGGTAATCCTCTCTTACAATACCGGGGGAATG
CTGGGACGCATGATGTCGCCCTAGGCCGAGAAACCATCTTGAAATGCATT
TCCGCTAGGGAAGGAGAGAATATAACAGTTCCTTTTTATGATAAGTCTTT
GTGTGGAGGATGGGGGGATCGAGCACCACGGGAGAGATGGCCAGTGGTGG
AGGGCCCTGTGGACGTTATTTTGCTGGAAGGGTGGATGCTTGGATTTAGG
CCGTGGCCCTCTGATGGGGAGGAAGGGGGAAGGAGTGAGGAGGGATTGAA
GGACGTGAATAATTACTTGGGCAGCTATCAGGAATGGCACGAGCTGGTCG
ATGCTTGGGTGATAGTGCAGGTGGAGGACTTAGAGGTAATATACAAGTGG
CGGTTGGAGGCGGAACGGAAAATGAGAGAGAAAAAGGGGAAGGAGGGGAG
CATGACTGATGAGGAGGTGGGGGATTTTGTGTCGAGATTCTTGCCGGCCT
ACAGGGCGTATTTGCAGCATTCTTTGTATGCTGCTGATGCGTTGCCGTCG
GAGAAGCCGGTGTTGCGGGTGGTGATCGATTGTGACAGGAAGCCCAAGGG
GTAAGACGAGGAAAGAGGGTAGATACGGAAGAAGACAACAGCTGTAATTT
GCATCGAGTTTAAGG back to topCoding sequence (CDS) from alignment at chr1:817503..819717+ >NO01G03100.1 ID=NO01G03100.1|Name=NO01G03100.1|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at chr1:817503..819717+ (Nannochloropsis oceanica) ATGCGGGCAGGATCTAACAGCATTAGCAGTCGGGGTAGTAGCAATGGCGG GGGTTGGCGAGAGAGAGATCGAGTGCTGTCTTATGCACGCCAAAGCCCCA TCTATCCCAAGTGCTTGCCAGCAACGACAGCAACAGACCCGAGCCCTCTT CCTCCCTCCAGCCAAGAATGGGTGGATAAGGGCATCTTCATGAAAAGCCA GCTCTCCGTTCCACCATCCACGCCAATGCAGTCTGACGTGGGCATCCGGA TTTTTCATTTATATTTGCCGCTTTACTTTTGGCTACGCGGCCTCGTGCTG CGGAGTCGATGCCGAAATAGGCCGTTTGAGCCGCCATCACCACTCCAGCA GCAGCAACAGCAGCAGCAGCAGCAGCGACAACAACGACAACAAGGATTGC AACCACAACACCAGCAGCAGCGCTGTCCTCTCGTCGTGGGTATCAATGCT CCCCAAGGCGCTGGCAAGACGACCCTAGTCAATTTCTGCCGAGCTCTCTT CAAGCTAGACGGGCTGAGGTGCGTCGTTCTTTCCATTGATGATTTTTATT TAACCAACAAAGAGCAACGAGCCGTAGCGGCAAAGCACAAAGGTAATCCT CTCTTACAATACCGGGGGAATGCTGGGACGCATGATGTCGCCCTAGGCCG AGAAACCATCTTGAAATGCATTTCCGCTAGGGAAGGAGAGAATATAACAG TTCCTTTTTATGATAAGTCTTTGTGTGGAGGATGGGGGGATCGAGCACCA CGGGAGAGATGGCCAGTGGTGGAGGGCCCTGTGGACGTTATTTTGCTGGA AGGGTGGATGCTTGGATTTAGGCCGTGGCCCTCTGATGGGGAGGAAGGGG GAAGGAGTGAGGAGGGATTGAAGGACGTGAATAATTACTTGGGCAGCTAT CAGGAATGGCACGAGCTGGTCGATGCTTGGGTGATAGTGCAGGTGGAGGA CTTAGAGGTAATATACAAGTGGCGGTTGGAGGCGGAACGGAAAATGAGAG AGAAAAAGGGGAAGGAGGGGAGCATGACTGATGAGGAGGTGGGGGATTTT GTGTCGAGATTCTTGCCGGCCTACAGGGCGTATTTGCAGCATTCTTTGTA TGCTGCTGATGCGTTGCCGTCGGAGAAGCCGGTGTTGCGGGTGGTGATCG ATTGTGACAGGAAGCCCAAGGGGTAA back to top
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