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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:799603..801394 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03050.1 vs.
Match: EWM29249.1 (photosystem ii oxygen evolving complex protein [Nannochloropsis gaditana]) HSP 1 Score: 332.4 bits (851), Expect = 1.200e-87 Identity = 176/245 (71.84%), Postives = 201/245 (82.04%), Query Frame = 0
Query: 1 MRSSVIAVACLVAACGRTQAFVLPSKSSSTISSARPQSRALSSSTALAALST-----SMHDRRGLLFKTTGSLLGLAGLALVRPANAYDEVPLVRDKLGGLLEPYTDIAKGLKVSRPSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAKGRGAELVEAKARLTEGVLFYEFEFKGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSFLPKL 241
M + VAC + A G T AFV PS+SS + + + ++ +A +T S DRR LLFK+ GSLLGL GL+L RPA A +EVPLVRDK GGLLEPYTDIAKGLK+SRPSGWNQF+G+PETYVVKWSDIINRDE+VVLNSTPVKASTT+V+ALGDVQ++GKKLA GRGAELVEAKARLTEGVLFYEFEFKGEA+SE+A LCVAKGRLWNLSAT+ATKRW K+RDL KGVIGSFLPKL
Sbjct: 1 MLRGLFTVACSLTALG-TAAFVPPSRSSFIFPTRQQLQQQQTTGRVMALYATNTPSLSTLDRRALLFKSAGSLLGLVGLSLARPAEAVEEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03050.1 ID=NO01G03050.1|Name=NO01G03050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp AGCGGTGTGAGTTTTGAATGTGAGACGCGCGTGTCGCACACTGCAAGGGG CTGCGCCCTTGCCTGCCTTACTCATCTCTTGGTGTGGAGGTATATGAAGC ACCTGTGAGTCGCGTTTAAAAGAACTGACCCGCCAATTTTGTGGGTCCTC CCGACAGGAGAGCCTCTCGGGGTTCTTCCACCGGGACCTGAGGGGCAATC GTCACACTTTCTTGCACGAAGAAATACAGCAGGATGGATGCATCAACGGG TTACGACCAGTGCTGCCACAATCCCTCCACCCACACAAGATGTGCTGGGT GGAGGTCATGCATATTTATTGATTCATACACCATTGTCAACAATGTCAAT CACACGCACACGATTTCCTTGTCGCACGTAATTTCCCCGCTTGACAACAA CAACCAGAAGCCATGCGGAGCTCCGTCATCGCGGTGGCTTGCCTCGTGGC TGCCTGCGGCAGAACCCAGGCCTTTGTCCTTCCTAGCAAGTCTTCCTCCA CAATCTCCTCCGCTCGACCGCAATCAAGAGCTCTGAGCAGCAGCACAGCC CTGGCGGCGTTGTCCACCTCCATGCATGACCGGCGTGGCCTCCTCTTCAA GACGACAGGGTCGTTGCTTGGGTTGGCCGGCCTGGCCTTGGTCCGCCCCG CCAATGCCTATGACGAGGTGCCCCTCGTCCGTGACAAGTTGGGTGGGTTG CTGGAACCGTACACGGATATTGCCAAGGGTCTCAAAGTCTCCCGCCCCTC CGGGTGGAACCAATTTGACGGCTCCCCCGAGACATACGTGGTAAAGTGGA GCGATATCATCAACCGCGACGAGCTCGTCGTGTTGAACTCCACACCTGTC AAGGCATCCACCACTTCCGTGGAAGCTCTGGGGGATGTCCAAGAAATTGG AAAAAAACTTGCGAAAGGCCGCGGAGCCGAGCTGGTCGAGGCCAAGGCGA GGCTGACGGAGGGGGTATTGTTTTATGAGTTTGAGTTCAAGGGGGAGGCG ATCTCGGAGTTGGCGTCTTTGTGCGTGGCAAAGGGGCGACTGTGGAATCT GAGTGCGACGGCCGCGACAAAACGATGGGCGAAGAAGAGGGATTTGTTCA AGGGGGTGATTGGTTCCTTCTTGCCTAAGCTCTAAGCAACGGGGGGAAGA AGCTGTGCCATTAAAGCTATTCTTGTTTCTGATTTCAGTCTTGGAGTGTC TAGATTCGTGTATCTGTGAGTGCAAGTTGAGTGAGCATCATCTTTGTCGT TGGAGTCTTTTAAAGGCAAGCAGTACAATTCTTCAGGGGCCATGTCCCCC TCCAGAGGTAGGAAGCAATTAATCAATCGCAAAAACTTTTAAAAGATGCG CACGCACACAATGATAAGGACGACTTATAGACGGGCATCGTACTTTCAAG ATAAACATA back to topprotein sequence of NO01G03050.1 >NO01G03050.1-protein ID=NO01G03050.1-protein|Name=NO01G03050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp MRSSVIAVACLVAACGRTQAFVLPSKSSSTISSARPQSRALSSSTALAAL STSMHDRRGLLFKTTGSLLGLAGLALVRPANAYDEVPLVRDKLGGLLEPY TDIAKGLKVSRPSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKAST TSVEALGDVQEIGKKLAKGRGAELVEAKARLTEGVLFYEFEFKGEAISEL ASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSFLPKL* back to topmRNA from alignment at chr1:799603..801394- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03050.1 ID=NO01G03050.1|Name=NO01G03050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp|location=Sequence derived from alignment at chr1:799603..801394- (Nannochloropsis oceanica) AGCGGTGTGAGTTTTGAATGTGAGACGCGCGTGTCGCACACTGCAAGGGG
CTGCGCCCTTGCCTGCCTTACTCATCTCTTGGTGTGGAGGTATATGAAGC
ACCTGTGAGTCGCGTTTAAAAGAACTGACCCGCCAATTTTGTGGGTCCTC
CCGACAGGAGAGCCTCTCGGGGTTCTTCCACCGGGACCTGAGGGGCAATC
GTCACACTTTCTTGCACGAAGAAATACAGCAGGATGGATGCATCAACGGG
TTACGACCAGTGCTGCCACAATCCCTCCACCCACACAAGATGTGCTGGGT
GGAGGTCATGCATATTTATTGATTCATACACCATTGTCAACAATGTCAAT
CACACGCACACGATTTCCTTGTCGCACGTAATTTCCCCGCTTGACAACAA
CAACCAGAAGCCATGCGGAGCTCCGTCATCGCGGTGGCTTGCCTCGTGGC
TGCCTGCGGCAGAACCCAGGCCTTTGTCCTTCCTAGCAAGTCTTCCTCCA
CAATCTCCTCCGCTCGACCGCAATCAAGAGCTCTGAGCAGCAGCACAGCC
CTGGCGGCGTTGTCCACCTCCATGCATGACCGGCGTGGCCTCCTCTTCAA
GACGACAGGGTCGTTGCTTGGGTTGGCCGGCCTGGCCTTGGTCCGCCCCG
CCAATGCCTATGACGAGGTGCCCCTCGTCCGTGACAAGTTGGGTGGGTTG
CTGGAACCGTACACGGATATTGCCAAGGTAAGGGGGAGGGGAGAAGGGTG
AAGGGGGTTTTGATACTGAAGGGGCAAGAGGGCGAAGAGGCGCTTGGCAA
GATAGATGAATCAACAGACTTGTTTTTTCGTTCATTCAATCTCTATGGCG
ATGGGTCTGAAGGAAAGACCTGAATAACGTGTGTCTCCCACGTGTCATCG
AGAGGCAAAGTGCTGATCTGAGGATGTCTTCTCTCCTCTGATTTTGGTTG
CGAAAAACAGTGAGTGTCTGTGGGGGAAAAAGCTGAAGATTTCCATGCGT
CAGATACTCAAGTCCTCGGTCTTTTGAAACAGAAAATTCTAAGGGTACAA
TCACATGCAAGCACTAAAAGGAACCCCTCCCCCACTTCATTCGCACACAT
ATCCGTACAGGGTCTCAAAGTCTCCCGCCCCTCCGGGTGGAACCAATTTG
ACGGCTCCCCCGAGACATACGTGGTAAAGTGGAGCGATATCATCAACCGC
GACGAGCTCGTCGTGTTGAACTCCACACCTGTCAAGGCATCCACCACTTC
CGTGGAAGCTCTGGGGGATGTCCAAGAAATTGGAAAAAAACTTGCGAAAG
GCCGCGGAGCCGAGCTGGTCGAGGCCAAGGCGAGGCTGACGGAGGGGGTA
TTGTTTTATGAGTTTGAGTTCAAGGGGGAGGCGATCTCGGAGTTGGCGTC
TTTGTGCGTGGCAAAGGGGCGACTGTGGAATCTGAGTGCGACGGCCGCGA
CAAAACGATGGGCGAAGAAGAGGGATTTGTTCAAGGGGGTGATTGGTTCC
TTCTTGCCTAAGCTCTAAGCAACGGGGGGAAGAAGCTGTGCCATTAAAGC
TATTCTTGTTTCTGATTTCAGTCTTGGAGTGTCTAGATTCGTGTATCTGT
GAGTGCAAGTTGAGTGAGCATCATCTTTGTCGTTGGAGTCTTTTAAAGGC
AAGCAGTACAATTCTTCAGGGGCCATGTCCCCCTCCAGAGGTAGGAAGCA
ATTAATCAATCGCAAAAACTTTTAAAAGATGCGCACGCACACAATGATAA
GGACGACTTATAGACGGGCATCGTACTTTCAAGATAAACATA back to topCoding sequence (CDS) from alignment at chr1:799603..801394- >NO01G03050.1 ID=NO01G03050.1|Name=NO01G03050.1|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at chr1:799603..801394- (Nannochloropsis oceanica) ATGCGGAGCTCCGTCATCGCGGTGGCTTGCCTCGTGGCTGCCTGCGGCAG AACCCAGGCCTTTGTCCTTCCTAGCAAGTCTTCCTCCACAATCTCCTCCG CTCGACCGCAATCAAGAGCTCTGAGCAGCAGCACAGCCCTGGCGGCGTTG TCCACCTCCATGCATGACCGGCGTGGCCTCCTCTTCAAGACGACAGGGTC GTTGCTTGGGTTGGCCGGCCTGGCCTTGGTCCGCCCCGCCAATGCCTATG ACGAGGTGCCCCTCGTCCGTGACAAGTTGGGTGGGTTGCTGGAACCGTAC ACGGATATTGCCAAGGGTCTCAAAGTCTCCCGCCCCTCCGGGTGGAACCA ATTTGACGGCTCCCCCGAGACATACGTGGTAAAGTGGAGCGATATCATCA ACCGCGACGAGCTCGTCGTGTTGAACTCCACACCTGTCAAGGCATCCACC ACTTCCGTGGAAGCTCTGGGGGATGTCCAAGAAATTGGAAAAAAACTTGC GAAAGGCCGCGGAGCCGAGCTGGTCGAGGCCAAGGCGAGGCTGACGGAGG GGGTATTGTTTTATGAGTTTGAGTTCAAGGGGGAGGCGATCTCGGAGTTG GCGTCTTTGTGCGTGGCAAAGGGGCGACTGTGGAATCTGAGTGCGACGGC CGCGACAAAACGATGGGCGAAGAAGAGGGATTTGTTCAAGGGGGTGATTG GTTCCTTCTTGCCTAAGCTCTAA back to top
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