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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:725683..727860 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02800.1 vs.
Match: XP_005855677.1 (hypothetical protein NGA_2007410 [Nannochloropsis gaditana CCMP526]; XP_005856304.1 hypothetical protein NGA_2007420 [Nannochloropsis gaditana CCMP526]; EKU20054.1 hypothetical protein NGA_2007420 [Nannochloropsis gaditana CCMP526]; EKU20683.1 hypothetical protein NGA_2007410 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 483.4 bits (1243), Expect = 8.700e-133 Identity = 259/509 (50.88%), Postives = 339/509 (66.60%), Query Frame = 0
Query: 6 PFQHQQQSERLPRFAGIMCFLLSVGLLCWDYGLLEKWEGVSEAVPTMSRDLRVLQSRSVWNQWWEGSVPINTGKVGRSDDAARAAALPSLGEKTLVIYNVHHSSSSLDNLHGENVDFFLKVGVGGESEHFVDYLFLVPPAPAAPLGLKSIEGREKEVTGPPVVIPPAVNVRVLERPQDCLGCSGLQDMLSSSNYNNSDSSSGVGNETVAGLPLTREGLLSRYAHFVFVDSSVRGPFLPRYMHRPRPRRTHQNRFTAPQPTKPWTSVFTDRLSDEIKLVGRSVSCEAELHVQAPVWATDRIGLQLILEQGVLECAMDMETARERHELGATRAVVGAGYGVDCLMLRYQGLNLTRLRQIEVPCMAGDDPSIPLLNDGLPINPLEVVFVLASPHLMASDLPVRRYTDYLLGRGGVKDSEMYTERGQAVLEARRQRLARMVKECNASLDMPHMMSRCPECINHDMGKDGERIFIELYVMAGYDFRFTIEETDVTKLPHHYCESFVRYQAPDVT 515
P + +R GI+ LL +G L + KW+ V +A P+ RDL VL SR+++ WW+ + T + S + + GEKTLVIY+VH+ S D EN+DFFL+VGV ESE FVDYLFLVP A L S GR+ + + P A +VRV+ERP DCLG SGL+ +++ +++ ++ +PL LLS Y+HF+ +DS+VRGPFLPRY+HR R + +R+ +PQ K W SV TDR+ E+KLVGRSVSCE ELHVQAPVWATDR GL+L+L+ GVL+CAM+ +ARERHELGATRAV+ AGY VDCLMLRYQG+NL RLR+ +PC A D+PS PLLNDGLP+NPLEV+FVLA+ H +ASD VRRYTDY LGR ++D++ T RGQA LEARRQRLA MV C A+LD H+ +RCP C++ + + IFI+ +VM GYDF+F++ T P +CE+F RYQAPD+T
Sbjct: 7 PLWYGNHCQRALPCMGILFALLYIGFLLRHGDWMSKWDEV-KAGPSQ-RDLLVLNSRNLF-AWWQHNDSAFTMENDYSKEGLWESESLPFGEKTLVIYSVHNDPSH-DTTSYENLDFFLRVGVDQESERFVDYLFLVPSAIFHSFNLTS--GRKGD---DMPMFPSADHVRVMERPHDCLGTSGLRSLITDNDWRGGIKHGA----RISSIPLNMNALLSHYSHFILLDSTVRGPFLPRYVHRAR---SGGSRWDSPQAVKSWVSVLTDRVGPEVKLVGRSVSCEPELHVQAPVWATDRQGLRLLLKNGVLDCAMEEASARERHELGATRAVLNAGYHVDCLMLRYQGINLARLREYGLPCTARDNPSSPLLNDGLPVNPLEVIFVLANRHFLASDALVRRYTDYFLGRVDLEDNQATTLRGQAALEARRQRLAGMVASCGATLDRKHLATRCPGCVSGKSLEVDQEIFIQNHVMKGYDFQFSVPTTIANHPPQAFCEAFARYQAPDLT 499
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02800.1 ID=NO01G02800.1|Name=NO01G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp ATTACGACAGCTATAGCACAGCTACGACAACGAGGACAAGGTGGCAACAG CAGCGGACGGCGTAAGCCTGGTCCCCGTGCTCTGGAGGGAAAACGCGGAC CCGTCTCCCGGCAGCACACGACGAAGCGCCGCACGAAGCCTGCCTAGGGC CACCCCACACGACCGACGAGACAGCAAGCAGCATGACACTCCCCGACCCC TTTCAGCACCAGCAGCAATCCGAGCGTCTGCCTCGGTTTGCGGGCATAAT GTGTTTCCTTTTAAGCGTGGGCTTGCTTTGCTGGGATTACGGTCTGCTGG AGAAATGGGAAGGGGTCTCAGAGGCAGTGCCAACGATGTCTAGAGATTTG CGGGTCCTCCAGTCTCGAAGTGTGTGGAACCAATGGTGGGAAGGTAGCGT ACCAATCAATACTGGGAAGGTTGGTCGCTCGGACGACGCCGCAAGGGCCG CGGCATTGCCTTCTTTGGGGGAGAAGACGCTGGTCATTTACAACGTGCAT CACTCTTCATCGTCGCTCGACAACTTGCACGGCGAAAACGTGGATTTCTT TCTTAAGGTCGGCGTAGGGGGAGAGTCGGAGCACTTCGTGGACTATCTTT TCCTGGTTCCACCTGCTCCGGCTGCTCCGCTGGGTTTGAAAAGCATTGAG GGCAGAGAGAAAGAAGTGACGGGGCCGCCCGTTGTAATCCCTCCTGCTGT CAACGTCCGCGTCCTGGAACGGCCGCAAGATTGCTTAGGGTGCAGCGGCC TTCAAGATATGCTAAGTAGCAGCAATTATAATAATTCTGACAGCAGTAGC GGCGTCGGCAACGAGACAGTTGCAGGCCTGCCGTTGACAAGAGAGGGGCT CTTGTCCCGCTACGCGCACTTTGTCTTTGTGGATTCATCGGTGCGAGGTC CTTTCCTACCACGCTACATGCATCGTCCCCGTCCACGAAGAACGCATCAA AATCGCTTTACCGCCCCCCAGCCAACCAAGCCTTGGACGAGTGTGTTCAC TGATCGACTAAGCGACGAGATAAAGCTGGTGGGGAGGTCTGTCAGTTGCG AGGCAGAGCTCCACGTTCAGGCACCTGTGTGGGCCACAGACAGGATAGGA CTACAGCTAATTTTGGAACAAGGCGTACTGGAGTGTGCGATGGACATGGA GACGGCGAGGGAGCGGCACGAGCTGGGAGCGACCCGTGCAGTGGTGGGGG CGGGGTATGGTGTGGATTGTCTTATGCTCCGGTATCAAGGCTTAAATCTG ACACGTTTGAGGCAGATAGAGGTGCCTTGCATGGCAGGGGATGACCCGAG CATTCCGCTGCTGAATGATGGTCTGCCAATAAATCCTTTGGAGGTGGTTT TTGTGTTGGCGAGCCCACATTTGATGGCGTCCGACCTACCAGTGCGTCGA TACACTGATTATTTGCTTGGTCGGGGGGGAGTGAAGGACAGCGAGATGTA CACGGAGCGGGGACAAGCTGTATTGGAAGCAAGAAGACAGCGGTTGGCGA GGATGGTGAAGGAGTGCAACGCAAGTTTGGATATGCCACATATGATGTCG AGATGTCCTGAGTGTATAAACCACGACATGGGGAAGGATGGTGAAAGAAT TTTTATAGAGCTTTATGTGATGGCTGGATATGATTTCCGGTTTACAATTG AGGAAACTGATGTGACGAAGCTGCCGCATCATTATTGTGAATCGTTTGTG CGGTACCAAGCCCCGGATGTGACGAGTTAAGGAAATATGCTAGATCAAGA TGGTCTACATATCATTCATATGATTGAATGATTGAATCAACCATTTTGCT AGAAATGATGTGTAGATAAGGTCAAAAGTGGAAACCATTGAGTCGGCTCC GCTTGCGCGGTATCTCTTGAATTGCATGTTTTGACCCGGTAGGCCGCCAG GATCAGGACATGGCGACATGAGAGGCGCGTGGATGATAAATGGCAGGCAT GTGATTTTACCTGCTTCCTACGGGAACCAGCTGCTATAATAGATGGAAAG AAAAAACGTTTATGGGAGGCTTTCTCATAGCCTCCACCTTCGTCTGGTTT CAATGTGTACCCCAGGACGCCAAGCTAGTGGAGCAAACTCAGGCTTACTC CCTGATAAGCATCGTCCCCTTGCCCCCCCAAAATGCATCAAGTAGGAAAG AATAACTATCACGTTTGAACATGTATGT back to topprotein sequence of NO01G02800.1 >NO01G02800.1-protein ID=NO01G02800.1-protein|Name=NO01G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=516bp MTLPDPFQHQQQSERLPRFAGIMCFLLSVGLLCWDYGLLEKWEGVSEAVP TMSRDLRVLQSRSVWNQWWEGSVPINTGKVGRSDDAARAAALPSLGEKTL VIYNVHHSSSSLDNLHGENVDFFLKVGVGGESEHFVDYLFLVPPAPAAPL GLKSIEGREKEVTGPPVVIPPAVNVRVLERPQDCLGCSGLQDMLSSSNYN NSDSSSGVGNETVAGLPLTREGLLSRYAHFVFVDSSVRGPFLPRYMHRPR PRRTHQNRFTAPQPTKPWTSVFTDRLSDEIKLVGRSVSCEAELHVQAPVW ATDRIGLQLILEQGVLECAMDMETARERHELGATRAVVGAGYGVDCLMLR YQGLNLTRLRQIEVPCMAGDDPSIPLLNDGLPINPLEVVFVLASPHLMAS DLPVRRYTDYLLGRGGVKDSEMYTERGQAVLEARRQRLARMVKECNASLD MPHMMSRCPECINHDMGKDGERIFIELYVMAGYDFRFTIEETDVTKLPHH YCESFVRYQAPDVTS* back to topmRNA from alignment at chr1:725683..727860+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02800.1 ID=NO01G02800.1|Name=NO01G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp|location=Sequence derived from alignment at chr1:725683..727860+ (Nannochloropsis oceanica) ATTACGACAGCTATAGCACAGCTACGACAACGAGGACAAGGTGGCAACAG
CAGCGGACGGCGTAAGCCTGGTCCCCGTGCTCTGGAGGGAAAACGCGGAC
CCGTCTCCCGGCAGCACACGACGAAGCGCCGCACGAAGCCTGCCTAGGGC
CACCCCACACGACCGACGAGACAGCAAGCAGCATGACACTCCCCGACCCC
TTTCAGCACCAGCAGCAATCCGAGCGTCTGCCTCGGTTTGCGGGCATAAT
GTGTTTCCTTTTAAGCGTGGGCTTGCTTTGCTGGGATTACGGTCTGCTGG
AGAAATGGGAAGGGGTCTCAGAGGCAGTGCCAACGATGTCTAGAGATTTG
CGGGTCCTCCAGTCTCGAAGTGTGTGGAACCAATGGTGGGAAGGTAGCGT
ACCAATCAATACTGGGAAGGTTGGTCGCTCGGACGACGCCGCAAGGGCCG
CGGCATTGCCTTCTTTGGGGGAGAAGACGCTGGTCATTTACAACGTGCAT
CACTCTTCATCGTCGCTCGACAACTTGCACGGCGAAAACGTGGATTTCTT
TCTTAAGGTCGGCGTAGGGGGAGAGTCGGAGCACTTCGTGGACTATCTTT
TCCTGGTTCCACCTGCTCCGGCTGCTCCGCTGGGTTTGAAAAGCATTGAG
GGCAGAGAGAAAGAAGTGACGGGGCCGCCCGTTGTAATCCCTCCTGCTGT
CAACGTCCGCGTCCTGGAACGGCCGCAAGATTGCTTAGGGTGCAGCGGCC
TTCAAGATATGCTAAGTAGCAGCAATTATAATAATTCTGACAGCAGTAGC
GGCGTCGGCAACGAGACAGTTGCAGGCCTGCCGTTGACAAGAGAGGGGCT
CTTGTCCCGCTACGCGCACTTTGTCTTTGTGGATTCATCGGTGCGAGGTC
CTTTCCTACCACGCTACATGCATCGTCCCCGTCCACGAAGAACGCATCAA
AATCGCTTTACCGCCCCCCAGCCAACCAAGCCTTGGACGAGTGTGTTCAC
TGATCGACTAAGCGACGAGATAAAGCTGGTGGGGAGGTCTGTCAGTTGCG
AGGCAGAGCTCCACGTTCAGGCACCTGTGTGGGCCACAGACAGGATAGGA
CTACAGCTAATTTTGGAACAAGGCGTACTGGAGTGTGCGATGGACATGGA
GACGGCGAGGGAGCGGCACGAGCTGGGAGCGACCCGTGCAGTGGTGGGGG
CGGGGTATGGTGTGGATTGTCTTATGCTCCGGTATCAAGGCTTAAATCTG
ACACGTTTGAGGCAGATAGAGGTGCCTTGCATGGCAGGGGATGACCCGAG
CATTCCGCTGCTGAATGATGGTCTGCCAATAAATCCTTTGGAGGTGGTTT
TTGTGTTGGCGAGCCCACATTTGATGGCGTCCGACCTACCAGTGCGTCGA
TACACTGATTATTTGCTTGGTCGGGGGGGAGTGAAGGACAGCGAGATGTA
CACGGAGCGGGGACAAGCTGTATTGGAAGCAAGAAGACAGCGGTTGGCGA
GGATGGTGAAGGAGTGCAACGCAAGTTTGGATATGCCACATATGATGTCG
AGATGTCCTGAGTGTATAAACCACGACATGGGGAAGGATGGTGAAAGAAT
TTTTATAGAGCTTTATGTGATGGCTGGATATGATTTCCGGTTTACAATTG
AGGAAACTGATGTGACGAAGCTGCCGCATCATTATTGTGAATCGTTTGTG
CGGTACCAAGCCCCGGATGTGACGAGTTAAGGAAATATGCTAGATCAAGA
TGGTCTACATATCATTCATATGATTGAATGATTGAATCAACCATTTTGCT
AGAAATGATGTGTAGATAAGGTCAAAAGTGGAAACCATTGAGTCGGCTCC
GCTTGCGCGGTATCTCTTGAATTGCATGTTTTGACCCGGTAGGCCGCCAG
GATCAGGACATGGCGACATGAGAGGCGCGTGGATGATAAATGGCAGGCAT
GTGATTTTACCTGCTTCCTACGGGAACCAGCTGCTATAATAGATGGAAAG
AAAAAACGTTTATGGGAGGCTTTCTCATAGCCTCCACCTTCGTCTGGTTT
CAATGTGTACCCCAGGACGCCAAGCTAGTGGAGCAAACTCAGGCTTACTC
CCTGATAAGCATCGTCCCCTTGCCCCCCCAAAATGCATCAAGTAGGAAAG
AATAACTATCACGTTTGAACATGTATGT back to topCoding sequence (CDS) from alignment at chr1:725683..727860+ >NO01G02800.1 ID=NO01G02800.1|Name=NO01G02800.1|organism=Nannochloropsis oceanica|type=CDS|length=1548bp|location=Sequence derived from alignment at chr1:725683..727860+ (Nannochloropsis oceanica) ATGACACTCCCCGACCCCTTTCAGCACCAGCAGCAATCCGAGCGTCTGCC TCGGTTTGCGGGCATAATGTGTTTCCTTTTAAGCGTGGGCTTGCTTTGCT GGGATTACGGTCTGCTGGAGAAATGGGAAGGGGTCTCAGAGGCAGTGCCA ACGATGTCTAGAGATTTGCGGGTCCTCCAGTCTCGAAGTGTGTGGAACCA ATGGTGGGAAGGTAGCGTACCAATCAATACTGGGAAGGTTGGTCGCTCGG ACGACGCCGCAAGGGCCGCGGCATTGCCTTCTTTGGGGGAGAAGACGCTG GTCATTTACAACGTGCATCACTCTTCATCGTCGCTCGACAACTTGCACGG CGAAAACGTGGATTTCTTTCTTAAGGTCGGCGTAGGGGGAGAGTCGGAGC ACTTCGTGGACTATCTTTTCCTGGTTCCACCTGCTCCGGCTGCTCCGCTG GGTTTGAAAAGCATTGAGGGCAGAGAGAAAGAAGTGACGGGGCCGCCCGT TGTAATCCCTCCTGCTGTCAACGTCCGCGTCCTGGAACGGCCGCAAGATT GCTTAGGGTGCAGCGGCCTTCAAGATATGCTAAGTAGCAGCAATTATAAT AATTCTGACAGCAGTAGCGGCGTCGGCAACGAGACAGTTGCAGGCCTGCC GTTGACAAGAGAGGGGCTCTTGTCCCGCTACGCGCACTTTGTCTTTGTGG ATTCATCGGTGCGAGGTCCTTTCCTACCACGCTACATGCATCGTCCCCGT CCACGAAGAACGCATCAAAATCGCTTTACCGCCCCCCAGCCAACCAAGCC TTGGACGAGTGTGTTCACTGATCGACTAAGCGACGAGATAAAGCTGGTGG GGAGGTCTGTCAGTTGCGAGGCAGAGCTCCACGTTCAGGCACCTGTGTGG GCCACAGACAGGATAGGACTACAGCTAATTTTGGAACAAGGCGTACTGGA GTGTGCGATGGACATGGAGACGGCGAGGGAGCGGCACGAGCTGGGAGCGA CCCGTGCAGTGGTGGGGGCGGGGTATGGTGTGGATTGTCTTATGCTCCGG TATCAAGGCTTAAATCTGACACGTTTGAGGCAGATAGAGGTGCCTTGCAT GGCAGGGGATGACCCGAGCATTCCGCTGCTGAATGATGGTCTGCCAATAA ATCCTTTGGAGGTGGTTTTTGTGTTGGCGAGCCCACATTTGATGGCGTCC GACCTACCAGTGCGTCGATACACTGATTATTTGCTTGGTCGGGGGGGAGT GAAGGACAGCGAGATGTACACGGAGCGGGGACAAGCTGTATTGGAAGCAA GAAGACAGCGGTTGGCGAGGATGGTGAAGGAGTGCAACGCAAGTTTGGAT ATGCCACATATGATGTCGAGATGTCCTGAGTGTATAAACCACGACATGGG GAAGGATGGTGAAAGAATTTTTATAGAGCTTTATGTGATGGCTGGATATG ATTTCCGGTTTACAATTGAGGAAACTGATGTGACGAAGCTGCCGCATCAT TATTGTGAATCGTTTGTGCGGTACCAAGCCCCGGATGTGACGAGTTAA back to top
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