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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:719906..721951 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02770.1 vs.
Match: EWM29171.1 (sec14 cytosolic factor [Nannochloropsis gaditana]) HSP 1 Score: 410.6 bits (1054), Expect = 4.500e-111 Identity = 188/288 (65.28%), Postives = 229/288 (79.51%), Query Frame = 0
Query: 22 REKKQQLDQVQPATTQTHETPDPTLAIGNSPRFLGDRQPLPDELQLLEDFQLLLDEGQVALPRSFWEANYNESRCSLFWRFLVANEGHLAHAKEQLTKDIAWREDIKLYELQGRTREEIVGVDDAFFLEQYPCIFLGYEDEANNYAPVVYRSLTHLQTKALAAKGVTVEKMVKHELWQYETDCKLLFSHPESFPARQLKVIIDINGMTWGQCTKDLVSILSGFSSFSKLHHPERLQKLFIIGAPKPFLFIWNTIISHIIPVSTKNKITILHTFEGHLWLEAWMAKLPA 310
RE+ QQ DQ D T +I P ++G RQPLP+ELQL+ +FQ +LD V LPR+FWEANY+ESRCSLFWRFLVAN+GH+ AK QL +D+AWR++I+L +LQ R+++VG++DAFF+ YPC+ LG+ED + NY+PVVYR LTHL TK LA KGVTVEKM+KHELWQYE DC+LLF HPESFP RQLKVIIDI+GMTW QCTKDL+SILSGFSSFSK+HHPERLQKL+IIGAPKPF F+WNTI+S IIP T+NKI ILH+ +G+ WLE WM P+
Sbjct: 18 RERGQQADQQSALV-------DATQSIDVVPSYVGGRQPLPEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPS 298
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02770.1 ID=NO01G02770.1|Name=NO01G02770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1615bp AACAGGGTCAGGATTAAGATGGAAGGTAGAGAAGCAGGAAGAAGCTCCCA GCTTGAGTCAACAACGGCGCCACCATCCCAAAGAGAAAAAAAGCAACAGC TGGACCAGGTGCAGCCTGCAACGACGCAGACGCATGAGACCCCTGACCCC ACGCTGGCCATAGGGAACTCGCCCCGCTTTTTGGGTGACCGACAGCCCCT TCCCGACGAGCTCCAGCTCCTAGAAGATTTTCAGCTCCTGCTTGACGAGG GCCAAGTTGCGTTGCCGCGCAGCTTTTGGGAGGCCAATTACAATGAGTCG CGATGCAGTCTCTTTTGGCGCTTCCTCGTCGCCAACGAAGGCCACCTTGC GCACGCAAAAGAGCAGCTGACCAAGGACATAGCCTGGAGGGAGGATATAA AGCTCTATGAGCTGCAGGGCCGAACACGCGAAGAAATAGTTGGCGTGGAT GATGCTTTTTTCTTGGAGCAGTACCCGTGCATTTTCCTAGGCTACGAAGA TGAAGCTAACAACTATGCTCCTGTAGTGTATAGGAGTTTAACGCACTTGC AGACCAAGGCTTTGGCAGCAAAGGGCGTGACAGTCGAGAAAATGGTCAAG CACGAGCTCTGGCAGTATGAGACGGATTGCAAGCTCTTGTTCTCGCATCC CGAAAGCTTCCCAGCTCGGCAACTTAAAGTTATCATTGACATTAATGGTA TGACCTGGGGGCAATGCACCAAAGACTTGGTGAGCATCCTCTCTGGATTT TCATCTTTCAGCAAGCTCCATCACCCTGAACGCCTGCAGAAGCTCTTCAT TATTGGTGCGCCCAAACCATTTCTCTTTATATGGAATACTATCATTTCAC ACATCATTCCGGTGAGTACCAAGAATAAGATCACGATTCTACACACATTT GAAGGGCATCTGTGGCTGGAGGCATGGATGGCGAAGCTCCCGGCAGCCTT GGAGGACGCAAAAGCCAAGGCAGCATCAGCACCGACGGGGCCAAAATAAC TTGTGTGTGTGCGCAGAGAAATATGATAAGGACATGAACATGTAAATATT GAAGTATTGAAGAAACCTCTCTGTTGTGGGTCAACTTGTGAAGATCGCGG AGTCCATCCCACTAACTCGGGACACGCTGTCTCTGGTGTCTTGGCTGCCT ACCTTTTTTTTAACCATACAAAAGCACAATCAAATTCCAGGAAACTGATC ACAATAGCTAGAGTAGAGGTGGACTTGTCACTTTTATCGAGTCACATCTG GAATTGGTTGTTGCTGACCAGTATGGGGTGAAAATCACCGTGAGATTTCT TGGCACGATGTTCCTCGTGATGCGGACGACGAGCTCTTGCCGCTTTATGT CAATGCTCATGTATCATAACCAATATCAAACGCAAACGAAAAATATGACA CTACAGAAAAAGGCGTGCAGTTACTTGCATGATACGTGTTAAGATGGAGA GCTTAGAACCTTTGCTGTACAGTTTAAAAAAAAAAACTTAAAAAAAAAAC TTAAAACTTAAAATGACTGACAAAAACATGTTGAAAGCCGCTCATCGCAG CTCCCTTCTTCATGTGTCCCCCAGAAATTCAGCGCAACCGAACAGTAGTA GATGATGAATCCCTG back to topprotein sequence of NO01G02770.1 >NO01G02770.1-protein ID=NO01G02770.1-protein|Name=NO01G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp MEGREAGRSSQLESTTAPPSQREKKQQLDQVQPATTQTHETPDPTLAIGN SPRFLGDRQPLPDELQLLEDFQLLLDEGQVALPRSFWEANYNESRCSLFW RFLVANEGHLAHAKEQLTKDIAWREDIKLYELQGRTREEIVGVDDAFFLE QYPCIFLGYEDEANNYAPVVYRSLTHLQTKALAAKGVTVEKMVKHELWQY ETDCKLLFSHPESFPARQLKVIIDINGMTWGQCTKDLVSILSGFSSFSKL HHPERLQKLFIIGAPKPFLFIWNTIISHIIPVSTKNKITILHTFEGHLWL EAWMAKLPAALEDAKAKAASAPTGPK* back to topmRNA from alignment at chr1:719906..721951- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02770.1 ID=NO01G02770.1|Name=NO01G02770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2046bp|location=Sequence derived from alignment at chr1:719906..721951- (Nannochloropsis oceanica) AACAGGGTCAGGATTAAGATGGAAGGTAGAGAAGCAGGAAGAAGCTCCCA
GCTTGAGTCAACAACGGCGCCACCATCCCAAAGAGAAAAAAAGCAACAGC
TGGACCAGGTGCAGCCTGCAACGACGCAGACGCATGAGACCCCTGACCCC
ACGCTGGCCATAGGGAACTCGCCCCGCTTTTTGGGTGACCGACAGCCCCT
TCCCGACGAGCTCCAGCTCCTAGAAGATTTTCAGCTCCTGCTTGACGAGG
GCCAAGTTGCGTTGCCGCGCAGGTACGTACGTGTTAGGACTTTTTGTGTC
AATCCCTGCTGTGATCTTGCTTACTTCTGATGGAGTTCCTTGTGGGGAAT
CTCTTCTCAGCACACGTGCACTTACCACGATTTGGGCGTGGTGCATCTCC
GTCTCCTTCATTTCGACCTCCCTTGGTGTGCGTGGCCCATGCCGATATCT
AGAAAGTGCACTTCGATGGGAGAACGCTCAAAAATGTATTGTTTTGTTGT
TGTTGAAAATATCAAATGCGCCCCATTATGAATTATTGGATTTGAACGAA
GAGGGTGCATGTTCGTGGAAGCTCCGCGATTTCAAAAGGTAACAGCGGAG
ACCGATTTAGTCACCACAAGAGTACATTGGAAGGTGGGCACACTCCTCAA
TCTTCTCCTCAGCCCACGGTTTCATTTATTCTTTCACGCATAATAACACA
CAGCTTTTGGGAGGCCAATTACAATGAGTCGCGATGCAGTCTCTTTTGGC
GCTTCCTCGTCGCCAACGAAGGCCACCTTGCGCACGCAAAAGAGCAGCTG
ACCAAGGACATAGCCTGGAGGGAGGATATAAAGCTCTATGAGCTGCAGGG
CCGAACACGCGAAGAAATAGTTGGCGTGGATGATGCTTTTTTCTTGGAGC
AGTACCCGTGCATTTTCCTAGGCTACGAAGATGAAGCTAACAACTATGCT
CCTGTAGTGTATAGGAGTTTAACGCACTTGCAGACCAAGGCTTTGGCAGC
AAAGGGCGTGACAGTCGAGAAAATGGTCAAGCACGAGCTCTGGCAGTATG
AGACGGATTGCAAGCTCTTGTTCTCGCATCCCGAAAGCTTCCCAGCTCGG
CAACTTAAAGTTATCATTGACATTAATGGTATGACCTGGGGGCAATGCAC
CAAAGACTTGGTGAGCATCCTCTCTGGATTTTCATCTTTCAGCAAGCTCC
ATCACCCTGAACGCCTGCAGAAGCTCTTCATTATTGGTGCGCCCAAACCA
TTTCTCTTTATATGGAATACTATCATTTCACACATCATTCCGGTGAGTAC
CAAGAATAAGATCACGATTCTACACACATTTGAAGGGCATCTGTGGCTGG
AGGCATGGATGGCGAAGCTCCCGGCAGCCTTGGAGGACGCAAAAGCCAAG
GCAGCATCAGCACCGACGGGGCCAAAATAACTTGTGTGTGTGCGCAGAGA
AATATGATAAGGACATGAACATGTAAATATTGAAGTATTGAAGAAACCTC
TCTGTTGTGGGTCAACTTGTGAAGATCGCGGAGTCCATCCCACTAACTCG
GGACACGCTGTCTCTGGTGTCTTGGCTGCCTACCTTTTTTTTAACCATAC
AAAAGCACAATCAAATTCCAGGAAACTGATCACAATAGCTAGAGTAGAGG
TGGACTTGTCACTTTTATCGAGTCACATCTGGAATTGGTTGTTGCTGACC
AGTATGGGGTGAAAATCACCGTGAGATTTCTTGGCACGATGTTCCTCGTG
ATGCGGACGACGAGCTCTTGCCGCTTTATGTCAATGCTCATGTATCATAA
CCAATATCAAACGCAAACGAAAAATATGACACTACAGAAAAAGGCGTGCA
GTTACTTGCATGATACGTGTTAAGATGGAGAGCTTAGAACCTTTGCTGTA
CAGTTTAAAAAAAAAAACTTAAAAAAAAAACTTAAAACTTAAAATGACTG
ACAAAAACATGTTGAAAGCCGCTCATCGCAGCTCCCTTCTTCATGTGTCC
CCCAGAAATTCAGCGCAACCGAACAGTAGTAGATGATGAATCCCTG back to topCoding sequence (CDS) from alignment at chr1:719906..721951- >NO01G02770.1 ID=NO01G02770.1|Name=NO01G02770.1|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr1:719906..721951- (Nannochloropsis oceanica) ATGGAAGGTAGAGAAGCAGGAAGAAGCTCCCAGCTTGAGTCAACAACGGC GCCACCATCCCAAAGAGAAAAAAAGCAACAGCTGGACCAGGTGCAGCCTG CAACGACGCAGACGCATGAGACCCCTGACCCCACGCTGGCCATAGGGAAC TCGCCCCGCTTTTTGGGTGACCGACAGCCCCTTCCCGACGAGCTCCAGCT CCTAGAAGATTTTCAGCTCCTGCTTGACGAGGGCCAAGTTGCGTTGCCGC GCAGCTTTTGGGAGGCCAATTACAATGAGTCGCGATGCAGTCTCTTTTGG CGCTTCCTCGTCGCCAACGAAGGCCACCTTGCGCACGCAAAAGAGCAGCT GACCAAGGACATAGCCTGGAGGGAGGATATAAAGCTCTATGAGCTGCAGG GCCGAACACGCGAAGAAATAGTTGGCGTGGATGATGCTTTTTTCTTGGAG CAGTACCCGTGCATTTTCCTAGGCTACGAAGATGAAGCTAACAACTATGC TCCTGTAGTGTATAGGAGTTTAACGCACTTGCAGACCAAGGCTTTGGCAG CAAAGGGCGTGACAGTCGAGAAAATGGTCAAGCACGAGCTCTGGCAGTAT GAGACGGATTGCAAGCTCTTGTTCTCGCATCCCGAAAGCTTCCCAGCTCG GCAACTTAAAGTTATCATTGACATTAATGGTATGACCTGGGGGCAATGCA CCAAAGACTTGGTGAGCATCCTCTCTGGATTTTCATCTTTCAGCAAGCTC CATCACCCTGAACGCCTGCAGAAGCTCTTCATTATTGGTGCGCCCAAACC ATTTCTCTTTATATGGAATACTATCATTTCACACATCATTCCGGTGAGTA CCAAGAATAAGATCACGATTCTACACACATTTGAAGGGCATCTGTGGCTG GAGGCATGGATGGCGAAGCTCCCGGCAGCCTTGGAGGACGCAAAAGCCAA GGCAGCATCAGCACCGACGGGGCCAAAATAA back to top
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