|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:619635..621113 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02400.1 vs.
Match: EWM29180.1 (sucrose transporter [Nannochloropsis gaditana]) HSP 1 Score: 701.4 bits (1809), Expect = 1.900e-198 Identity = 366/486 (75.31%), Postives = 422/486 (86.83%), Query Frame = 0
Query: 7 SSSTIKSERAPLMPKVQASSVGASDVDSDAGDSRTPWCLAAQIYPTFAFLGVQMCWSVAYGYITPILVTFNLSIETVGIVWFFSSLASCMTVPLISAASDFSQNTWGRRRPFLGGFLLVGAGGLILLAYAESLGVWLGDTNEEQRYALSMAVIGLILGQVGLDGIQGMERGLCTDTLEADALQGVNSFFALQGSLGRLLGFGLGSINLAKAPGLSYLGSQTQILFLLSAGVLFVTTCGTLVTSVEKHFTPQLYELFNGSFVSSAKRAVFGMKSLPKAVRLAAVSNLLAWSAFALLFYYGSYFYGAYIYGGNPEDTGKPDSLYERGVQAASFAFLLMAVVASFTSLVLGSLAARVGLKRVWVASLVCAAAVFLGLFFLQPGNKDAALALFACLGLPLAASYQCPWSIVTVAVRRSENSALYCSLFRSISEVLPFALQGLLGSLLLSLFQGSAREVFVAASVLMAVAGVYTHICVLDVQDVEEYEEEM 493
SS+T KSE P +P +QAS + +++VDSD+ +SR+ C AQ+YPTFAFLGVQMCWSVAY YITPILVTFNL+IETVG+VW SSLASC TVPL+SAASDF+QN+WGRRRP++ FLLVG GGL+LLAYA+ +GVW GD +QR ALSMAV+GLIL QVGLDGIQ MERGLCTDTL+ADALQGVN+FFALQGSLGR++GFGLG+ NL KAPGLSYLG Q QILFLLSA +LF+TT TL+T+ EK F PQLYELFN S SS KRA+FGMKSLPKAVRLAAVSNLLAWS+FALLFYYGSYFYG++I+GG+PEDTG DS+YERGVQ+ASF FLLMAVV S SL LG + A+VG+K +WV++L AAA FLG FFL+PG++ AALAL ACLGLPLAASYQCPW+IVTVAVRRSENSALYCSLFRS+SEVLPFALQGL+GS LLS+FQGSAR VF AASVLMA A V+T+ VLDVQDVEEYEEE+
Sbjct: 10 SSTTGKSEVTPFLPPLQAS-MDSTEVDSDSEESRSVKCSPAQLYPTFAFLGVQMCWSVAYAYITPILVTFNLNIETVGLVWCMSSLASCATVPLLSAASDFTQNSWGRRRPYMAMFLLVGGGGLLLLAYADRIGVWFGDIGGQQRNALSMAVMGLILSQVGLDGIQCMERGLCTDTLDADALQGVNAFFALQGSLGRVVGFGLGAANLGKAPGLSYLGDQIQILFLLSAFLLFLTTSTTLLTAREKRFIPQLYELFNASVTSSGKRALFGMKSLPKAVRLAAVSNLLAWSSFALLFYYGSYFYGSFIFGGDPEDTGVIDSIYERGVQSASFGFLLMAVVGSMMSLGLGFVTAKVGIKTMWVSTLAFAAATFLGFFFLRPGDRGAALALSACLGLPLAASYQCPWAIVTVAVRRSENSALYCSLFRSLSEVLPFALQGLIGSALLSVFQGSARSVFAAASVLMAAAAVHTYFFVLDVQDVEEYEEEI 494
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02400.1 ID=NO01G02400.1|Name=NO01G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp ATGCCTTGGCGGTGGGATTCGAGCTCGACCATCAAAAGTGAGCGGGCACC TCTGATGCCAAAGGTTCAAGCTTCCTCAGTGGGCGCAAGCGATGTCGACA GTGATGCAGGGGACAGCCGCACTCCGTGGTGCTTGGCTGCGCAAATCTAC CCAACGTTCGCGTTTCTGGGCGTTCAGATGTGTTGGTCTGTAGCTTACGG ATATATCACGCCTATTCTCGTCACATTTAATCTCAGCATCGAAACGGTTG GCATTGTGTGGTTCTTCTCCTCCTTGGCAAGCTGTATGACGGTACCCCTC ATATCGGCGGCCAGCGACTTCTCCCAAAACACGTGGGGCCGACGGCGGCC GTTTTTGGGAGGATTTTTACTAGTGGGGGCTGGCGGACTTATTCTTTTGG CGTACGCCGAGTCGCTGGGAGTGTGGCTGGGAGATACAAACGAAGAGCAG AGGTATGCGCTCAGCATGGCCGTCATAGGTTTGATCCTAGGGCAAGTGGG GCTCGACGGGATACAAGGGATGGAACGGGGGCTTTGCACGGACACATTGG AGGCGGATGCGTTGCAAGGTGTCAATTCCTTCTTTGCCTTGCAGGGCAGC TTGGGAAGACTGTTGGGTTTTGGATTGGGATCTATCAACCTGGCCAAGGC GCCTGGCCTCTCATACCTCGGTAGCCAAACCCAGATTCTCTTTCTTCTTT CAGCCGGCGTCTTGTTTGTGACGACGTGCGGAACCTTGGTGACCTCAGTA GAAAAGCACTTTACTCCTCAGCTTTATGAACTCTTCAATGGTAGTTTTGT CTCCTCGGCCAAAAGGGCGGTGTTTGGAATGAAGTCCCTCCCGAAAGCCG TGCGTCTCGCGGCAGTGTCTAACCTCCTGGCCTGGAGTGCCTTTGCCCTT TTGTTTTACTATGGCTCTTACTTTTACGGCGCCTACATTTATGGAGGGAA TCCAGAGGATACGGGTAAGCCCGATTCCTTGTATGAGCGCGGAGTACAAG CAGCAAGTTTTGCATTCTTGCTGATGGCAGTGGTGGCCAGTTTCACATCG CTGGTTTTGGGATCATTGGCGGCGAGAGTAGGTTTGAAACGGGTCTGGGT AGCGTCGCTGGTATGTGCTGCGGCCGTGTTTCTGGGCCTGTTCTTCCTGC AGCCGGGAAACAAGGATGCAGCCCTGGCACTCTTTGCCTGCTTAGGGCTG CCACTGGCTGCGAGTTACCAATGTCCATGGTCAATCGTGACAGTGGCAGT TCGACGCTCAGAAAACTCGGCTTTATACTGCAGCCTGTTTAGAAGCATCA GCGAGGTGCTGCCATTCGCTCTTCAAGGGTTGCTGGGCTCGCTGCTGCTC AGCCTCTTTCAAGGGAGTGCACGGGAGGTTTTTGTTGCGGCGTCGGTGCT CATGGCCGTGGCTGGGGTCTACACGCATATATGTGTCCTAGATGTACAAG ACGTGGAAGAGTACGAGGAAGAGATGTGA back to topprotein sequence of NO01G02400.1 >NO01G02400.1-protein ID=NO01G02400.1-protein|Name=NO01G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp MPWRWDSSSTIKSERAPLMPKVQASSVGASDVDSDAGDSRTPWCLAAQIY PTFAFLGVQMCWSVAYGYITPILVTFNLSIETVGIVWFFSSLASCMTVPL ISAASDFSQNTWGRRRPFLGGFLLVGAGGLILLAYAESLGVWLGDTNEEQ RYALSMAVIGLILGQVGLDGIQGMERGLCTDTLEADALQGVNSFFALQGS LGRLLGFGLGSINLAKAPGLSYLGSQTQILFLLSAGVLFVTTCGTLVTSV EKHFTPQLYELFNGSFVSSAKRAVFGMKSLPKAVRLAAVSNLLAWSAFAL LFYYGSYFYGAYIYGGNPEDTGKPDSLYERGVQAASFAFLLMAVVASFTS LVLGSLAARVGLKRVWVASLVCAAAVFLGLFFLQPGNKDAALALFACLGL PLAASYQCPWSIVTVAVRRSENSALYCSLFRSISEVLPFALQGLLGSLLL SLFQGSAREVFVAASVLMAVAGVYTHICVLDVQDVEEYEEEM* back to topmRNA from alignment at chr1:619635..621113+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02400.1 ID=NO01G02400.1|Name=NO01G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp|location=Sequence derived from alignment at chr1:619635..621113+ (Nannochloropsis oceanica) ATGCCTTGGCGGTGGGATTCGAGCTCGACCATCAAAAGTGAGCGGGCACC
TCTGATGCCAAAGGTTCAAGCTTCCTCAGTGGGCGCAAGCGATGTCGACA
GTGATGCAGGGGACAGCCGCACTCCGTGGTGCTTGGCTGCGCAAATCTAC
CCAACGTTCGCGTTTCTGGGCGTTCAGATGTGTTGGTCTGTAGCTTACGG
ATATATCACGCCTATTCTCGTCACATTTAATCTCAGCATCGAAACGGTTG
GCATTGTGTGGTTCTTCTCCTCCTTGGCAAGCTGTATGACGGTACCCCTC
ATATCGGCGGCCAGCGACTTCTCCCAAAACACGTGGGGCCGACGGCGGCC
GTTTTTGGGAGGATTTTTACTAGTGGGGGCTGGCGGACTTATTCTTTTGG
CGTACGCCGAGTCGCTGGGAGTGTGGCTGGGAGATACAAACGAAGAGCAG
AGGTATGCGCTCAGCATGGCCGTCATAGGTTTGATCCTAGGGCAAGTGGG
GCTCGACGGGATACAAGGGATGGAACGGGGGCTTTGCACGGACACATTGG
AGGCGGATGCGTTGCAAGGTGTCAATTCCTTCTTTGCCTTGCAGGGCAGC
TTGGGAAGACTGTTGGGTTTTGGATTGGGATCTATCAACCTGGCCAAGGC
GCCTGGCCTCTCATACCTCGGTAGCCAAACCCAGATTCTCTTTCTTCTTT
CAGCCGGCGTCTTGTTTGTGACGACGTGCGGAACCTTGGTGACCTCAGTA
GAAAAGCACTTTACTCCTCAGCTTTATGAACTCTTCAATGGTAGTTTTGT
CTCCTCGGCCAAAAGGGCGGTGTTTGGAATGAAGTCCCTCCCGAAAGCCG
TGCGTCTCGCGGCAGTGTCTAACCTCCTGGCCTGGAGTGCCTTTGCCCTT
TTGTTTTACTATGGCTCTTACTTTTACGGCGCCTACATTTATGGAGGGAA
TCCAGAGGATACGGGTAAGCCCGATTCCTTGTATGAGCGCGGAGTACAAG
CAGCAAGTTTTGCATTCTTGCTGATGGCAGTGGTGGCCAGTTTCACATCG
CTGGTTTTGGGATCATTGGCGGCGAGAGTAGGTTTGAAACGGGTCTGGGT
AGCGTCGCTGGTATGTGCTGCGGCCGTGTTTCTGGGCCTGTTCTTCCTGC
AGCCGGGAAACAAGGATGCAGCCCTGGCACTCTTTGCCTGCTTAGGGCTG
CCACTGGCTGCGAGTTACCAATGTCCATGGTCAATCGTGACAGTGGCAGT
TCGACGCTCAGAAAACTCGGCTTTATACTGCAGCCTGTTTAGAAGCATCA
GCGAGGTGCTGCCATTCGCTCTTCAAGGGTTGCTGGGCTCGCTGCTGCTC
AGCCTCTTTCAAGGGAGTGCACGGGAGGTTTTTGTTGCGGCGTCGGTGCT
CATGGCCGTGGCTGGGGTCTACACGCATATATGTGTCCTAGATGTACAAG
ACGTGGAAGAGTACGAGGAAGAGATGTGA back to topCoding sequence (CDS) from alignment at chr1:619635..621113+ >NO01G02400.1 ID=NO01G02400.1|Name=NO01G02400.1|organism=Nannochloropsis oceanica|type=CDS|length=1479bp|location=Sequence derived from alignment at chr1:619635..621113+ (Nannochloropsis oceanica) ATGCCTTGGCGGTGGGATTCGAGCTCGACCATCAAAAGTGAGCGGGCACC TCTGATGCCAAAGGTTCAAGCTTCCTCAGTGGGCGCAAGCGATGTCGACA GTGATGCAGGGGACAGCCGCACTCCGTGGTGCTTGGCTGCGCAAATCTAC CCAACGTTCGCGTTTCTGGGCGTTCAGATGTGTTGGTCTGTAGCTTACGG ATATATCACGCCTATTCTCGTCACATTTAATCTCAGCATCGAAACGGTTG GCATTGTGTGGTTCTTCTCCTCCTTGGCAAGCTGTATGACGGTACCCCTC ATATCGGCGGCCAGCGACTTCTCCCAAAACACGTGGGGCCGACGGCGGCC GTTTTTGGGAGGATTTTTACTAGTGGGGGCTGGCGGACTTATTCTTTTGG CGTACGCCGAGTCGCTGGGAGTGTGGCTGGGAGATACAAACGAAGAGCAG AGGTATGCGCTCAGCATGGCCGTCATAGGTTTGATCCTAGGGCAAGTGGG GCTCGACGGGATACAAGGGATGGAACGGGGGCTTTGCACGGACACATTGG AGGCGGATGCGTTGCAAGGTGTCAATTCCTTCTTTGCCTTGCAGGGCAGC TTGGGAAGACTGTTGGGTTTTGGATTGGGATCTATCAACCTGGCCAAGGC GCCTGGCCTCTCATACCTCGGTAGCCAAACCCAGATTCTCTTTCTTCTTT CAGCCGGCGTCTTGTTTGTGACGACGTGCGGAACCTTGGTGACCTCAGTA GAAAAGCACTTTACTCCTCAGCTTTATGAACTCTTCAATGGTAGTTTTGT CTCCTCGGCCAAAAGGGCGGTGTTTGGAATGAAGTCCCTCCCGAAAGCCG TGCGTCTCGCGGCAGTGTCTAACCTCCTGGCCTGGAGTGCCTTTGCCCTT TTGTTTTACTATGGCTCTTACTTTTACGGCGCCTACATTTATGGAGGGAA TCCAGAGGATACGGGTAAGCCCGATTCCTTGTATGAGCGCGGAGTACAAG CAGCAAGTTTTGCATTCTTGCTGATGGCAGTGGTGGCCAGTTTCACATCG CTGGTTTTGGGATCATTGGCGGCGAGAGTAGGTTTGAAACGGGTCTGGGT AGCGTCGCTGGTATGTGCTGCGGCCGTGTTTCTGGGCCTGTTCTTCCTGC AGCCGGGAAACAAGGATGCAGCCCTGGCACTCTTTGCCTGCTTAGGGCTG CCACTGGCTGCGAGTTACCAATGTCCATGGTCAATCGTGACAGTGGCAGT TCGACGCTCAGAAAACTCGGCTTTATACTGCAGCCTGTTTAGAAGCATCA GCGAGGTGCTGCCATTCGCTCTTCAAGGGTTGCTGGGCTCGCTGCTGCTC AGCCTCTTTCAAGGGAGTGCACGGGAGGTTTTTGTTGCGGCGTCGGTGCT CATGGCCGTGGCTGGGGTCTACACGCATATATGTGTCCTAGATGTACAAG ACGTGGAAGAGTACGAGGAAGAGATGTGA back to top
|