NO01G02210.1, NO01G02210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02210.1
Unique NameNO01G02210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2198
Alignment locationchr1:569710..572050 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:569710..572050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G02210.1 vs.
Match: EWM29199.1 (Protein kinase, ATP binding site [Nannochloropsis gaditana])

HSP 1 Score: 721.8 bits (1862), Expect = 1.300e-204
Identity = 364/425 (85.65%), Postives = 389/425 (91.53%), Query Frame = 0 
Query:    4 DGSEWPSSVDQFPLEKKIGQGAFATVYKAHCPAKGNIPVAIKVMDLENINSSFEDIRQEVQMMRMSDHPNILRCYCSFVHECQLWLVMQMMEKGSCLHVMTQAKRMGMGEGMREDWLAYILRESLQGLKYFHDQGQIHRDVKAGNILLDGQGNVRLADFGVSGWLINSGDRRQTTKTFVGTPCWMAPEVMEQIDGYDYKADIWSFGITALELAKGYAPYAHFAPMKVLIMTIQQEAPSLKSYPDDRSVDGEAFSRGFREIVRLCLQKDPKKRPTCTTLLGHKYFAKRSKDSMVTDLLERIETVGEGDMENVPRLPGTGPAYISHDGAETLRAGAAGIARGGGEGGEGDYQDTVKAGKEG--GGGGGKMPPASEEYVKGTTWVFDDGSQVILRADG-EGKGGA-GGEGGGGPEG---REGGKGGEE 422
            +G +WPS V+QFPLEKKIGQGAFATVYKAHCPAK N+ VAIKVMDLENINSSFEDIRQEVQMMRMSDHPNILRCYCSFVHECQLWLVMQMMEKGSCLHVMTQAKRMGMGEGMRE+WLAYIL+ESLQGLKYFHDQGQIHRDVKAGNILLDG+G+VRLADFGVSGWLINSGDRRQTTKTFVGTPCWMAPEVMEQIDGYDYKADIWSFGITALELAKGYAPYAHFAPMKVLIMTIQQEAPSLKSYPDD+SVDGE FSRGFREIVRLCLQKDPKKRPTCTTLL HKYF KRSKDS+V++LL ++ETVGE D+EN PRLPGTGPAY+SHDGAETLRAGAAGIARG G GG+G+YQDTVKAGKE     G  K P A EE+V+GTTWVFDDGSQVILRA+  +GKG A G EG  G +G   RE   GG++
Sbjct:    3 EGGDWPSCVEQFPLEKKIGQGAFATVYKAHCPAKANVAVAIKVMDLENINSSFEDIRQEVQMMRMSDHPNILRCYCSFVHECQLWLVMQMMEKGSCLHVMTQAKRMGMGEGMREEWLAYILKESLQGLKYFHDQGQIHRDVKAGNILLDGEGHVRLADFGVSGWLINSGDRRQTTKTFVGTPCWMAPEVMEQIDGYDYKADIWSFGITALELAKGYAPYAHFAPMKVLIMTIQQEAPSLKSYPDDKSVDGEPFSRGFREIVRLCLQKDPKKRPTCTTLLNHKYFGKRSKDSLVSELLAKVETVGEQDVENTPRLPGTGPAYVSHDGAETLRAGAAGIARGEG-GGKGEYQDTVKAGKEERLADGSKKGPAAEEEFVRGTTWVFDDGSQVILRAEAQDGKGAAEGSEGQKGTDGTKNRENKGGGDD 426
The following BLAST results are available for this feature:
BLAST of NO01G02210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29199.11.300e-20485.65Protein kinase, ATP binding site [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02210NO01G02210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02210.1NO01G02210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02210.1.cds1NO01G02210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02210.1.cds2NO01G02210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02210.1 ID=NO01G02210.1|Name=NO01G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2198bp
CTCACACTCAGCTGAAAGCAGGATCGTCTATCGTCTCTTTCCCTTGCCAT
GCAAGCGCGCCGGCGGGCATTGCGCTGTCCACGTCTGGGAACGGCCAACA
AGGCTGTTTGGTTCAGAGAGGCAGAGTTTACCATCGTGTGTTGGTCACGG
CGACGGTGGGTTGGAGGAACAGGTGCATTTTTTTGCGTCTTCCTGCCTCG
TCGTCGTCCTCATCGTTCGATTATGCTAAGCTTGTGCTTTTGTCTTGAGG
CTCGTCAATCTCCCCACCTCCTCCCGATTCACCACCCTCACGATTTACAG
CGTTGCCTGGTCGAGCTATTTACAAGCCAAGGCACAGCCTAGGCCGCGTG
ATCCTTTCTCGTGCGTCGTTATCATAATCTTCTCCTCATCGTCGTGATCG
CAGCAGAAGCAGTAGCACACGTGTCTTGTAGAGGTTTGGACTGCGAGCCA
ATTTGACCGCAGCGGCAGCACTAGGAGCAGTAGCAGCATCAGAAAGAGGA
GTAAGATCAGCAGCACTATCGACACCATCATTGGCCGGCTTTGGAGGCAA
GCAGGGGAGGACAAGCTGCTGCACCTTTCTCCAAATCACTACCCTCCGAC
GAGTCAAGGCGTTCCCCATCCACCCTCCAAGGCGGAAGAGCAATGTGCAT
CTAATCGAGAGCGCCCATCTATCCTTTCCTCTTCAATCGACATTTCCCTC
GGTCACCGGCACTCGCGTTCCCGTCGCCTGCTCCGCATATTTTTAGTAGC
TTCGCCAACATCGTTGGGTTGTCGTGACAGCAGCAGTGGTAGTAGCAGCA
GATTCAGCACCAGCAATATTTGCAACCATGCCAATGGATGGATCTGAGTG
GCCCAGCAGCGTGGATCAGTTTCCACTCGAGAAAAAGATTGGGCAAGGCG
CTTTCGCCACTGTTTACAAGGCTCATTGCCCTGCCAAAGGAAACATCCCC
GTGGCTATCAAGGTAATGGACCTGGAAAATATCAACTCATCATTTGAAGA
CATTCGGCAAGAGGTTCAAATGATGCGCATGTCGGACCATCCCAACATAT
TGCGGTGCTACTGCTCCTTCGTGCATGAGTGCCAACTGTGGTTGGTGATG
CAAATGATGGAAAAGGGCTCCTGTCTACACGTCATGACCCAGGCCAAACG
CATGGGTATGGGGGAGGGTATGCGCGAGGACTGGCTGGCGTATATCTTAA
GGGAATCGCTGCAGGGGCTCAAATATTTTCATGACCAGGGCCAGATTCAC
CGGGACGTCAAGGCGGGGAACATTCTATTGGATGGACAAGGTAATGTCCG
CCTCGCGGATTTTGGGGTATCTGGGTGGTTGATCAATTCCGGAGATCGGC
GGCAGACGACCAAGACGTTTGTGGGGACACCGTGTTGGATGGCGCCTGAG
GTGATGGAGCAGATCGATGGGTATGACTACAAGGCGGATATTTGGTCGTT
CGGGATCACGGCATTGGAGCTAGCGAAGGGGTATGCGCCCTATGCACACT
TTGCCCCCATGAAGGTCTTGATTATGACCATTCAGCAGGAGGCGCCAAGC
CTTAAGAGCTACCCGGATGATCGATCCGTGGACGGCGAGGCTTTCTCACG
TGGGTTCCGAGAGATCGTGCGGTTGTGCCTGCAAAAAGACCCGAAGAAAC
GCCCCACCTGCACCACCCTCTTGGGCCACAAGTACTTCGCAAAGCGAAGC
AAGGACTCCATGGTCACGGATTTGTTGGAAAGGATAGAGACGGTAGGGGA
AGGGGACATGGAGAATGTTCCCAGGCTTCCGGGCACGGGTCCCGCGTACA
TCTCGCATGATGGCGCCGAGACTCTCAGGGCGGGAGCGGCGGGTATTGCT
CGGGGAGGGGGGGAAGGAGGAGAGGGAGATTACCAAGATACGGTCAAGGC
CGGAAAGGAAGGTGGAGGGGGAGGAGGGAAGATGCCGCCGGCAAGCGAGG
AGTATGTGAAGGGGACGACCTGGGTTTTTGATGATGGCTCGCAGGTGATA
TTGAGGGCAGATGGGGAAGGGAAGGGGGGGGCTGGAGGGGAGGGAGGAGG
AGGGCCGGAAGGGAGGGAGGGAGGAAAGGGGGGGGAAGAGGGGGAGTTAG
GGCTGATGATGACGATTTTTATGATGATTTCGAAAAGCTTACCAAAGGGG
AGAATTTCAAGGATGGGGACACATAAGAAAGGAGAGGAGATGGAATGA
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protein sequence of NO01G02210.1

>NO01G02210.1-protein ID=NO01G02210.1-protein|Name=NO01G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MPMDGSEWPSSVDQFPLEKKIGQGAFATVYKAHCPAKGNIPVAIKVMDLE
NINSSFEDIRQEVQMMRMSDHPNILRCYCSFVHECQLWLVMQMMEKGSCL
HVMTQAKRMGMGEGMREDWLAYILRESLQGLKYFHDQGQIHRDVKAGNIL
LDGQGNVRLADFGVSGWLINSGDRRQTTKTFVGTPCWMAPEVMEQIDGYD
YKADIWSFGITALELAKGYAPYAHFAPMKVLIMTIQQEAPSLKSYPDDRS
VDGEAFSRGFREIVRLCLQKDPKKRPTCTTLLGHKYFAKRSKDSMVTDLL
ERIETVGEGDMENVPRLPGTGPAYISHDGAETLRAGAAGIARGGGEGGEG
DYQDTVKAGKEGGGGGGKMPPASEEYVKGTTWVFDDGSQVILRADGEGKG
GAGGEGGGGPEGREGGKGGEEGELGLMMTIFMMISKSLPKGRISRMGTHK
KGEEME*
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mRNA from alignment at chr1:569710..572050+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02210.1 ID=NO01G02210.1|Name=NO01G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2341bp|location=Sequence derived from alignment at chr1:569710..572050+ (Nannochloropsis oceanica)
CTCACACTCAGCTGAAAGCAGGATCGTCTATCGTCTCTTTCCCTTGCCAT
GCAAGCGCGCCGGCGGGCATTGCGCTGTCCACGTCTGGGAACGGCCAACA
AGGCTGTTTGGTTCAGAGAGGCAGAGTTTACCATCGTGTGTTGGTCACGG
CGACGGTGGGTTGGAGGAACAGGTGCATTTTTTTGCGTCTTCCTGCCTCG
TCGTCGTCCTCATCGTTCGATTATGCTAAGCTTGTGCTTTTGTCTTGAGG
CTCGTCAATCTCCCCACCTCCTCCCGATTCACCACCCTCACGATTTACAG
CGTTGCCTGGTCGAGCTATTTACAAGCCAAGGCACAGCCTAGGCCGCGTG
ATCCTTTCTCGTGCGTCGTTATCATAATCTTCTCCTCATCGTCGTGATCG
CAGCAGAAGCAGTAGCACACGTGTCTTGTAGAGGTTTGGACTGCGAGCCA
ATTTGACCGCAGCGGCAGCACTAGGAGCAGTAGCAGCATCAGAAAGAGGA
GTAAGATCAGCAGCACTATCGACACCATCATTGGCCGGCTTTGGAGGCAA
GCAGGGGAGGACAAGCTGCTGCACCTTTCTCCAAATCACTACCCTCCGAC
GAGTCAAGGCGTTCCCCATCCACCCTCCAAGGCGGAAGAGCAATGTGCAT
CTAATCGAGAGCGCCCATCTATCCTTTCCTCTTCAATCGACATTTCCCTC
GGTCACCGGCACTCGCGTTCCCGTCGCCTGCTCCGCATATTTTTAGTAGC
TTCGCCAACATCGTTGGGTTGTCGTGACAGCAGCAGTGGTAGTAGCAGCA
GATTCAGCACCAGCAATATTTGCAACCATGCCAATGGATGGATCTGAGTG
GCCCAGCAGCGTGGATCAGTTTCCACTCGAGAAAAAGATTGGGCAAGGCG
CTTTCGCCACTGTTTACAAGGCTCATTGCCCTGCCAAAGGAAACATCCCC
GTGGCTATCAAGGTAATGGACCTGGAAAATATCAACTCATCATTTGAAGA
CATTCGGCAAGAGGTTCAAATGATGCGCATGTCGGACCATCCCAACATAT
TGCGGTGCTACTGCTCCTTCGTGCATGAGTGCCAACTGTGGTTGGTGATG
CAAATGATGGAAAAGGGCTCCTGTCTACACGTCATGACCCAGGCCAAACG
CATGGGTATGGGGGAGGGTATGCGCGAGGACTGGCTGGCGTATATCTTAA
GGGAATCGCTGCAGGGGCTCAAATATTTTCATGACCAGGGCCAGATTCAC
CGGGACGTCAAGGCGGGGAACATTCTATTGGATGGACAAGGTAATGTCCG
CCTCGCGGATTTTGGGGTATCTGGGTGGTTGATCAATTCCGGAGATCGGC
GGCAGACGACCAAGACGTTTGTGGGGACACCGTGTTGGATGGCGCCTGAG
GTGATGGAGCAGATCGATGGGTATGACTACAAGGCGGATATTTGGTCGTT
CGGGATCACGGCATTGGAGCTAGCGAAGGGGTATGCGCCCTATGCACACT
TTGCCCCCATGAAGGTCTTGATTATGACCATTCAGCAGGAGGTAAGGGTC
TGCAGATGGGAGGGAAGAGAGGGAGTGGCAATTAGTAAGTGTCTTCCCGA
TCCATCTGCCGCTTTTCATGGTATACCCTTCTTCCCGCCCTTTTTCACTG
CCTCTCTCGTTCCCTTGCTCCTTTCTTTTTGTAGGCGCCAAGCCTTAAGA
GCTACCCGGATGATCGATCCGTGGACGGCGAGGCTTTCTCACGTGGGTTC
CGAGAGATCGTGCGGTTGTGCCTGCAAAAAGACCCGAAGAAACGCCCCAC
CTGCACCACCCTCTTGGGCCACAAGTACTTCGCAAAGCGAAGCAAGGACT
CCATGGTCACGGATTTGTTGGAAAGGATAGAGACGGTAGGGGAAGGGGAC
ATGGAGAATGTTCCCAGGCTTCCGGGCACGGGTCCCGCGTACATCTCGCA
TGATGGCGCCGAGACTCTCAGGGCGGGAGCGGCGGGTATTGCTCGGGGAG
GGGGGGAAGGAGGAGAGGGAGATTACCAAGATACGGTCAAGGCCGGAAAG
GAAGGTGGAGGGGGAGGAGGGAAGATGCCGCCGGCAAGCGAGGAGTATGT
GAAGGGGACGACCTGGGTTTTTGATGATGGCTCGCAGGTGATATTGAGGG
CAGATGGGGAAGGGAAGGGGGGGGCTGGAGGGGAGGGAGGAGGAGGGCCG
GAAGGGAGGGAGGGAGGAAAGGGGGGGGAAGAGGGGGAGTTAGGGCTGAT
GATGACGATTTTTATGATGATTTCGAAAAGCTTACCAAAGGGGAGAATTT
CAAGGATGGGGACACATAAGAAAGGAGAGGAGATGGAATGA
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Coding sequence (CDS) from alignment at chr1:569710..572050+

>NO01G02210.1 ID=NO01G02210.1|Name=NO01G02210.1|organism=Nannochloropsis oceanica|type=CDS|length=1371bp|location=Sequence derived from alignment at chr1:569710..572050+ (Nannochloropsis oceanica)
ATGCCAATGGATGGATCTGAGTGGCCCAGCAGCGTGGATCAGTTTCCACT
CGAGAAAAAGATTGGGCAAGGCGCTTTCGCCACTGTTTACAAGGCTCATT
GCCCTGCCAAAGGAAACATCCCCGTGGCTATCAAGGTAATGGACCTGGAA
AATATCAACTCATCATTTGAAGACATTCGGCAAGAGGTTCAAATGATGCG
CATGTCGGACCATCCCAACATATTGCGGTGCTACTGCTCCTTCGTGCATG
AGTGCCAACTGTGGTTGGTGATGCAAATGATGGAAAAGGGCTCCTGTCTA
CACGTCATGACCCAGGCCAAACGCATGGGTATGGGGGAGGGTATGCGCGA
GGACTGGCTGGCGTATATCTTAAGGGAATCGCTGCAGGGGCTCAAATATT
TTCATGACCAGGGCCAGATTCACCGGGACGTCAAGGCGGGGAACATTCTA
TTGGATGGACAAGGTAATGTCCGCCTCGCGGATTTTGGGGTATCTGGGTG
GTTGATCAATTCCGGAGATCGGCGGCAGACGACCAAGACGTTTGTGGGGA
CACCGTGTTGGATGGCGCCTGAGGTGATGGAGCAGATCGATGGGTATGAC
TACAAGGCGGATATTTGGTCGTTCGGGATCACGGCATTGGAGCTAGCGAA
GGGGTATGCGCCCTATGCACACTTTGCCCCCATGAAGGTCTTGATTATGA
CCATTCAGCAGGAGGCGCCAAGCCTTAAGAGCTACCCGGATGATCGATCC
GTGGACGGCGAGGCTTTCTCACGTGGGTTCCGAGAGATCGTGCGGTTGTG
CCTGCAAAAAGACCCGAAGAAACGCCCCACCTGCACCACCCTCTTGGGCC
ACAAGTACTTCGCAAAGCGAAGCAAGGACTCCATGGTCACGGATTTGTTG
GAAAGGATAGAGACGGTAGGGGAAGGGGACATGGAGAATGTTCCCAGGCT
TCCGGGCACGGGTCCCGCGTACATCTCGCATGATGGCGCCGAGACTCTCA
GGGCGGGAGCGGCGGGTATTGCTCGGGGAGGGGGGGAAGGAGGAGAGGGA
GATTACCAAGATACGGTCAAGGCCGGAAAGGAAGGTGGAGGGGGAGGAGG
GAAGATGCCGCCGGCAAGCGAGGAGTATGTGAAGGGGACGACCTGGGTTT
TTGATGATGGCTCGCAGGTGATATTGAGGGCAGATGGGGAAGGGAAGGGG
GGGGCTGGAGGGGAGGGAGGAGGAGGGCCGGAAGGGAGGGAGGGAGGAAA
GGGGGGGGAAGAGGGGGAGTTAGGGCTGATGATGACGATTTTTATGATGA
TTTCGAAAAGCTTACCAAAGGGGAGAATTTCAAGGATGGGGACACATAAG
AAAGGAGAGGAGATGGAATGA
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Synonyms
Publications