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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:449762..451480 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01770.1 vs.
Match: EWM29104.1 (lysyl-trna synthetase [Nannochloropsis gaditana]) HSP 1 Score: 913.7 bits (2360), Expect = 2.900e-262 Identity = 475/571 (83.19%), Postives = 505/571 (88.44%), Query Frame = 0
Query: 3 LRPALRTAAVTATAYPRASLTRTLLVRMQS-GGDGADATAPPKKPKQQQKQKGGGKQPKVEEELLTGAALTAKENEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEEEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKED 573
+R LRT AV P +R L+VRM S G D ATA KK QKQKG KQ +V+EE LTGAALTAKENE+K DR KARAMEAEGR AFA TY VTA+VA IN+KWAALE G EDE ADV+VAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRL EEFTKLKA+TDSGDIVGVRGSVKRTEKGEISVY REW+MLTK+LLPLPDKWHGLTDVNKRYRQRE DLIVNP VKE FRLRAKMFSG+RRMLD++GFLEIETPILQ HPGGADARPFKTFHNSLDMDLT+RIATELHLKRLVVGGF+RVYE+GRIFRNEGISTRHNPEFTS+ELYQAY+DY+DMMDLTEE+I GLA LL TE L YQN TI+ QRPWRR TMHELVAEKLPG FDL+TL D+S ESLEKAKE+ARAA VP++ TC SVGHVVQACFEELCEADLIQPTFV DHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQR+RFE QVERKA L LEEAA VDEEFLAALERGMPPTGGLGIGLDRLVMLF DAPSIKDVIAFPLL+KED
Sbjct: 59 IRSILRTVAVAVR--PGIFPSRGLVVRMLSDGADVGPATAGSKK----QKQKGTKKQTQVDEEPLTGAALTAKENELKVDRWNKARAMEAEGRPAFAATYPVTASVAHINKKWAALEAGAEDESADVAVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLGEEFTKLKAYTDSGDIVGVRGSVKRTEKGEISVYVREWSMLTKALLPLPDKWHGLTDVNKRYRQREVDLIVNPQVKETFRLRAKMFSGLRRMLDERGFLEIETPILQVHPGGADARPFKTFHNSLDMDLTMRIATELHLKRLVVGGFERVYEVGRIFRNEGISTRHNPEFTSVELYQAYADYYDMMDLTEELIHGLAKSLLNTEDLVYQNQTIHLQRPWRRTTMHELVAEKLPGQFDLSTLADNSVESLEKAKEVARAAGVPDVGTCQSVGHVVQACFEELCEADLIQPTFVTDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRKRFEAQVERKAALNLEEAATVDEEFLAALERGMPPTGGLGIGLDRLVMLFSDAPSIKDVIAFPLLKKED 623
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01770.1 ID=NO01G01770.1|Name=NO01G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp ATGCTCTTGAGACCAGCTCTGCGGACAGCGGCTGTTACGGCGACAGCATA CCCTCGTGCCTCTCTGACTCGCACGCTGCTGGTGCGCATGCAAAGTGGGG GAGACGGCGCAGACGCCACCGCTCCCCCCAAGAAGCCGAAGCAGCAACAA AAGCAAAAAGGCGGCGGCAAGCAACCTAAAGTGGAAGAGGAGCTCTTAAC AGGCGCAGCATTGACAGCGAAGGAGAACGAGATAAAGCAGGATAGGTTGG TCAAGGCCCGGGCCATGGAAGCGGAGGGCCGAACGGCATTTGCCACAACC TACCGGGTAACGGCGACGGTGGCCTCGATCAACGAGAAATGGGCTGCCCT TGAACCTGGGGTTGAGGACGAGGAGGCTGATGTATCGGTGGCGGGGCGGA TAATGGCGCGACGGGTGTTTGGGAAGCTAGCGTTTTTTACCTTGCAAGAC GACAGTGGGGTCATTCAGTTGTACTTGGACAAGGGAAGGTTGGAGGAGGA GTTTACGAAGCTGAAGGCATGGACGGATAGTGGAGATATTGTGGGAGTGC GGGGGTCGGTGAAACGAACAGAGAAGGGGGAGATTTCGGTATATGCCAGG GAGTGGACAATGCTGACCAAGTCTCTCTTACCTCTGCCTGATAAATGGCA TGGGCTCACGGATGTGAATAAGCGATATAGGCAGAGGGAGACTGATTTAA TTGTGAACCCGCATGTGAAAGAAATGTTTCGGCTGCGTGCTAAGATGTTT TCTGGTATTCGGAGGATGCTTGATGATAAGGGTTTTCTGGAGATAGAGAC GCCTATCTTACAGACTCACCCCGGGGGGGCCGATGCCAGGCCTTTCAAGA CGTTCCACAACAGTCTGGACATGGATTTGACCTTACGGATTGCGACGGAA TTGCATCTGAAAAGATTGGTGGTGGGGGGTTTTGATCGGGTGTATGAGCT GGGGCGTATTTTTAGGAACGAGGGTATCTCGACGAGGCATAACCCGGAGT TTACTTCCATTGAGTTGTATCAGGCCTACAGCGACTATCACGACATGATG GATTTAACCGAGGAGGTCATCAGTGGTCTGGCTACAAAACTCTTACAAAC TGAGACCCTGACGTATCAGAATACCACCATTAACTTTCAACGTCCCTGGC GACGCGCTACCATGCATGAACTGGTCGCGGAGAAGCTACCCGGAAATTTT GATTTGGCAACACTGCGAGACAGTAGTCCCGAGAGTCTCGAAAAAGCCAA AGAGATAGCACGTGCGGCCAGTGTTCCTGAAATTGAAACTTGTATCAGTG TTGGTCATGTGGTCCAGGCGTGTTTCGAAGAGCTGTGTGAGGCTGACTTG ATTCAACCAACCTTTGTGATTGATCATCCTGTGGAGGTCTCTCCGCTGGC GAAGCCGCATAGGAGCAAGCCAGGACTGACGGAGCGATTTGAGTTGTTCG TGTATGGGAGGGAGTTGGCGAATGCTTTTTCGGAGCTGACGGACCCCGTA GATCAGAGGAGGCGGTTCGAGGAGCAGGTCGAGAGGAAGGCGAAGCTAGG GTTGGAGGAAGCGGCGGAGGTTGATGAGGAGTTCTTGGCCGCGCTGGAGA GAGGAATGCCTCCGACAGGGGGATTGGGGATTGGCCTTGATAGGCTGGTG ATGCTCTTTGGTGATGCACCGTCAATTAAGGATGTGATTGCCTTCCCGCT GTTGAGGAAGGAGGATTAG back to topprotein sequence of NO01G01770.1 >NO01G01770.1-protein ID=NO01G01770.1-protein|Name=NO01G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp MLLRPALRTAAVTATAYPRASLTRTLLVRMQSGGDGADATAPPKKPKQQQ KQKGGGKQPKVEEELLTGAALTAKENEIKQDRLVKARAMEAEGRTAFATT YRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQD DSGVIQLYLDKGRLEEEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAR EWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMF SGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATE LHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMM DLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNF DLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADL IQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPV DQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLV MLFGDAPSIKDVIAFPLLRKED* back to topmRNA from alignment at chr1:449762..451480- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01770.1 ID=NO01G01770.1|Name=NO01G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp|location=Sequence derived from alignment at chr1:449762..451480- (Nannochloropsis oceanica) ATGCTCTTGAGACCAGCTCTGCGGACAGCGGCTGTTACGGCGACAGCATA
CCCTCGTGCCTCTCTGACTCGCACGCTGCTGGTGCGCATGCAAAGTGGGG
GAGACGGCGCAGACGCCACCGCTCCCCCCAAGAAGCCGAAGCAGCAACAA
AAGCAAAAAGGCGGCGGCAAGCAACCTAAAGTGGAAGAGGAGCTCTTAAC
AGGCGCAGCATTGACAGCGAAGGAGAACGAGATAAAGCAGGATAGGTTGG
TCAAGGCCCGGGCCATGGAAGCGGAGGGCCGAACGGCATTTGCCACAACC
TACCGGGTAACGGCGACGGTGGCCTCGATCAACGAGAAATGGGCTGCCCT
TGAACCTGGGGTTGAGGACGAGGAGGCTGATGTATCGGTGGCGGGGCGGA
TAATGGCGCGACGGGTGTTTGGGAAGCTAGCGTTTTTTACCTTGCAAGAC
GACAGTGGGGTCATTCAGTTGTACTTGGACAAGGGAAGGTTGGAGGAGGA
GTTTACGAAGCTGAAGGCATGGACGGATAGTGGAGATATTGTGGGAGTGC
GGGGGTCGGTGAAACGAACAGAGAAGGGGGAGATTTCGGTATATGCCAGG
GAGTGGACAATGCTGACCAAGTCTCTCTTACCTCTGCCTGATAAATGGCA
TGGGCTCACGGATGTGAATAAGCGATATAGGCAGAGGGAGACTGATTTAA
TTGTGAACCCGCATGTGAAAGAAATGTTTCGGCTGCGTGCTAAGATGTTT
TCTGGTATTCGGAGGATGCTTGATGATAAGGGTTTTCTGGAGATAGAGAC
GCCTATCTTACAGACTCACCCCGGGGGGGCCGATGCCAGGCCTTTCAAGA
CGTTCCACAACAGTCTGGACATGGATTTGACCTTACGGATTGCGACGGAA
TTGCATCTGAAAAGATTGGTGGTGGGGGGTTTTGATCGGGTGTATGAGCT
GGGGCGTATTTTTAGGAACGAGGGTATCTCGACGAGGCATAACCCGGAGT
TTACTTCCATTGAGTTGTATCAGGCCTACAGCGACTATCACGACATGATG
GATTTAACCGAGGAGGTCATCAGTGGTCTGGCTACAAAACTCTTACAAAC
TGAGACCCTGACGTATCAGAATACCACCATTAACTTTCAACGTCCCTGGC
GACGCGCTACCATGCATGAACTGGTCGCGGAGAAGCTACCCGGAAATTTT
GATTTGGCAACACTGCGAGACAGTAGTCCCGAGAGTCTCGAAAAAGCCAA
AGAGATAGCACGTGCGGCCAGTGTTCCTGAAATTGAAACTTGTATCAGTG
TTGGTCATGTGGTCCAGGCGTGTTTCGAAGAGCTGTGTGAGGCTGACTTG
ATTCAACCAACCTTTGTGATTGATCATCCTGTGGAGGTCTCTCCGCTGGC
GAAGCCGCATAGGAGCAAGCCAGGACTGACGGAGCGATTTGAGTTGTTCG
TGTATGGGAGGGAGTTGGCGAATGCTTTTTCGGAGCTGACGGACCCCGTA
GATCAGAGGAGGCGGTTCGAGGAGCAGGTCGAGAGGAAGGCGAAGCTAGG
GTTGGAGGAAGCGGCGGAGGTTGATGAGGAGTTCTTGGCCGCGCTGGAGA
GAGGAATGCCTCCGACAGGGGGATTGGGGATTGGCCTTGATAGGCTGGTG
ATGCTCTTTGGTGATGCACCGTCAATTAAGGATGTGATTGCCTTCCCGCT
GTTGAGGAAGGAGGATTAG back to topCoding sequence (CDS) from alignment at chr1:449762..451480- >NO01G01770.1 ID=NO01G01770.1|Name=NO01G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr1:449762..451480- (Nannochloropsis oceanica) ATGCTCTTGAGACCAGCTCTGCGGACAGCGGCTGTTACGGCGACAGCATA CCCTCGTGCCTCTCTGACTCGCACGCTGCTGGTGCGCATGCAAAGTGGGG GAGACGGCGCAGACGCCACCGCTCCCCCCAAGAAGCCGAAGCAGCAACAA AAGCAAAAAGGCGGCGGCAAGCAACCTAAAGTGGAAGAGGAGCTCTTAAC AGGCGCAGCATTGACAGCGAAGGAGAACGAGATAAAGCAGGATAGGTTGG TCAAGGCCCGGGCCATGGAAGCGGAGGGCCGAACGGCATTTGCCACAACC TACCGGGTAACGGCGACGGTGGCCTCGATCAACGAGAAATGGGCTGCCCT TGAACCTGGGGTTGAGGACGAGGAGGCTGATGTATCGGTGGCGGGGCGGA TAATGGCGCGACGGGTGTTTGGGAAGCTAGCGTTTTTTACCTTGCAAGAC GACAGTGGGGTCATTCAGTTGTACTTGGACAAGGGAAGGTTGGAGGAGGA GTTTACGAAGCTGAAGGCATGGACGGATAGTGGAGATATTGTGGGAGTGC GGGGGTCGGTGAAACGAACAGAGAAGGGGGAGATTTCGGTATATGCCAGG GAGTGGACAATGCTGACCAAGTCTCTCTTACCTCTGCCTGATAAATGGCA TGGGCTCACGGATGTGAATAAGCGATATAGGCAGAGGGAGACTGATTTAA TTGTGAACCCGCATGTGAAAGAAATGTTTCGGCTGCGTGCTAAGATGTTT TCTGGTATTCGGAGGATGCTTGATGATAAGGGTTTTCTGGAGATAGAGAC GCCTATCTTACAGACTCACCCCGGGGGGGCCGATGCCAGGCCTTTCAAGA CGTTCCACAACAGTCTGGACATGGATTTGACCTTACGGATTGCGACGGAA TTGCATCTGAAAAGATTGGTGGTGGGGGGTTTTGATCGGGTGTATGAGCT GGGGCGTATTTTTAGGAACGAGGGTATCTCGACGAGGCATAACCCGGAGT TTACTTCCATTGAGTTGTATCAGGCCTACAGCGACTATCACGACATGATG GATTTAACCGAGGAGGTCATCAGTGGTCTGGCTACAAAACTCTTACAAAC TGAGACCCTGACGTATCAGAATACCACCATTAACTTTCAACGTCCCTGGC GACGCGCTACCATGCATGAACTGGTCGCGGAGAAGCTACCCGGAAATTTT GATTTGGCAACACTGCGAGACAGTAGTCCCGAGAGTCTCGAAAAAGCCAA AGAGATAGCACGTGCGGCCAGTGTTCCTGAAATTGAAACTTGTATCAGTG TTGGTCATGTGGTCCAGGCGTGTTTCGAAGAGCTGTGTGAGGCTGACTTG ATTCAACCAACCTTTGTGATTGATCATCCTGTGGAGGTCTCTCCGCTGGC GAAGCCGCATAGGAGCAAGCCAGGACTGACGGAGCGATTTGAGTTGTTCG TGTATGGGAGGGAGTTGGCGAATGCTTTTTCGGAGCTGACGGACCCCGTA GATCAGAGGAGGCGGTTCGAGGAGCAGGTCGAGAGGAAGGCGAAGCTAGG GTTGGAGGAAGCGGCGGAGGTTGATGAGGAGTTCTTGGCCGCGCTGGAGA GAGGAATGCCTCCGACAGGGGGATTGGGGATTGGCCTTGATAGGCTGGTG ATGCTCTTTGGTGATGCACCGTCAATTAAGGATGTGATTGCCTTCCCGCT GTTGAGGAAGGAGGATTAG back to top
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