NO01G01770.1, NO01G01770.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G01770.1
Unique Name	NO01G01770.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1719
Alignment location	chr1:449762..451480 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:449762..451480 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO01G01770.1 vs.
Match: EWM29104.1 (lysyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 913.7 bits (2360), Expect = 2.900e-262
Identity = 475/571 (83.19%), Postives = 505/571 (88.44%), Query Frame = 0

Query:    3 LRPALRTAAVTATAYPRASLTRTLLVRMQS-GGDGADATAPPKKPKQQQKQKGGGKQPKVEEELLTGAALTAKENEIKQDRLVKARAMEAEGRTAFATTYRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLEEEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAREWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMFSGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATELHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMMDLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNFDLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADLIQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLVMLFGDAPSIKDVIAFPLLRKED 573
            +R  LRT AV     P    +R L+VRM S G D   ATA  KK    QKQKG  KQ +V+EE LTGAALTAKENE+K DR  KARAMEAEGR AFA TY VTA+VA IN+KWAALE G EDE ADV+VAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRL EEFTKLKA+TDSGDIVGVRGSVKRTEKGEISVY REW+MLTK+LLPLPDKWHGLTDVNKRYRQRE DLIVNP VKE FRLRAKMFSG+RRMLD++GFLEIETPILQ HPGGADARPFKTFHNSLDMDLT+RIATELHLKRLVVGGF+RVYE+GRIFRNEGISTRHNPEFTS+ELYQAY+DY+DMMDLTEE+I GLA  LL TE L YQN TI+ QRPWRR TMHELVAEKLPG FDL+TL D+S ESLEKAKE+ARAA VP++ TC SVGHVVQACFEELCEADLIQPTFV DHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQR+RFE QVERKA L LEEAA VDEEFLAALERGMPPTGGLGIGLDRLVMLF DAPSIKDVIAFPLL+KED
Sbjct:   59 IRSILRTVAVAVR--PGIFPSRGLVVRMLSDGADVGPATAGSKK----QKQKGTKKQTQVDEEPLTGAALTAKENELKVDRWNKARAMEAEGRPAFAATYPVTASVAHINKKWAALEAGAEDESADVAVAGRIMARRVFGKLAFFTLQDDSGVIQLYLDKGRLGEEFTKLKAYTDSGDIVGVRGSVKRTEKGEISVYVREWSMLTKALLPLPDKWHGLTDVNKRYRQREVDLIVNPQVKETFRLRAKMFSGLRRMLDERGFLEIETPILQVHPGGADARPFKTFHNSLDMDLTMRIATELHLKRLVVGGFERVYEVGRIFRNEGISTRHNPEFTSVELYQAYADYYDMMDLTEELIHGLAKSLLNTEDLVYQNQTIHLQRPWRRTTMHELVAEKLPGQFDLSTLADNSVESLEKAKEVARAAGVPDVGTCQSVGHVVQACFEELCEADLIQPTFVTDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPVDQRKRFEAQVERKAALNLEEAATVDEEFLAALERGMPPTGGLGIGLDRLVMLFSDAPSIKDVIAFPLLKKED 623

The following BLAST results are available for this feature:

BLAST of NO01G01770.1 vs.

BLAST of NO01G01770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29104.1	2.900e-262	83.19	lysyl-trna synthetase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G01770	NO01G01770	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G01770.1	NO01G01770.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G01770.1.cds1	NO01G01770.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:449762..451480-
coding sequence from alignment at chr1:449762..451480-

mRNA sequence

>NO01G01770.1 ID=NO01G01770.1|Name=NO01G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp
ATGCTCTTGAGACCAGCTCTGCGGACAGCGGCTGTTACGGCGACAGCATA
CCCTCGTGCCTCTCTGACTCGCACGCTGCTGGTGCGCATGCAAAGTGGGG
GAGACGGCGCAGACGCCACCGCTCCCCCCAAGAAGCCGAAGCAGCAACAA
AAGCAAAAAGGCGGCGGCAAGCAACCTAAAGTGGAAGAGGAGCTCTTAAC
AGGCGCAGCATTGACAGCGAAGGAGAACGAGATAAAGCAGGATAGGTTGG
TCAAGGCCCGGGCCATGGAAGCGGAGGGCCGAACGGCATTTGCCACAACC
TACCGGGTAACGGCGACGGTGGCCTCGATCAACGAGAAATGGGCTGCCCT
TGAACCTGGGGTTGAGGACGAGGAGGCTGATGTATCGGTGGCGGGGCGGA
TAATGGCGCGACGGGTGTTTGGGAAGCTAGCGTTTTTTACCTTGCAAGAC
GACAGTGGGGTCATTCAGTTGTACTTGGACAAGGGAAGGTTGGAGGAGGA
GTTTACGAAGCTGAAGGCATGGACGGATAGTGGAGATATTGTGGGAGTGC
GGGGGTCGGTGAAACGAACAGAGAAGGGGGAGATTTCGGTATATGCCAGG
GAGTGGACAATGCTGACCAAGTCTCTCTTACCTCTGCCTGATAAATGGCA
TGGGCTCACGGATGTGAATAAGCGATATAGGCAGAGGGAGACTGATTTAA
TTGTGAACCCGCATGTGAAAGAAATGTTTCGGCTGCGTGCTAAGATGTTT
TCTGGTATTCGGAGGATGCTTGATGATAAGGGTTTTCTGGAGATAGAGAC
GCCTATCTTACAGACTCACCCCGGGGGGGCCGATGCCAGGCCTTTCAAGA
CGTTCCACAACAGTCTGGACATGGATTTGACCTTACGGATTGCGACGGAA
TTGCATCTGAAAAGATTGGTGGTGGGGGGTTTTGATCGGGTGTATGAGCT
GGGGCGTATTTTTAGGAACGAGGGTATCTCGACGAGGCATAACCCGGAGT
TTACTTCCATTGAGTTGTATCAGGCCTACAGCGACTATCACGACATGATG
GATTTAACCGAGGAGGTCATCAGTGGTCTGGCTACAAAACTCTTACAAAC
TGAGACCCTGACGTATCAGAATACCACCATTAACTTTCAACGTCCCTGGC
GACGCGCTACCATGCATGAACTGGTCGCGGAGAAGCTACCCGGAAATTTT
GATTTGGCAACACTGCGAGACAGTAGTCCCGAGAGTCTCGAAAAAGCCAA
AGAGATAGCACGTGCGGCCAGTGTTCCTGAAATTGAAACTTGTATCAGTG
TTGGTCATGTGGTCCAGGCGTGTTTCGAAGAGCTGTGTGAGGCTGACTTG
ATTCAACCAACCTTTGTGATTGATCATCCTGTGGAGGTCTCTCCGCTGGC
GAAGCCGCATAGGAGCAAGCCAGGACTGACGGAGCGATTTGAGTTGTTCG
TGTATGGGAGGGAGTTGGCGAATGCTTTTTCGGAGCTGACGGACCCCGTA
GATCAGAGGAGGCGGTTCGAGGAGCAGGTCGAGAGGAAGGCGAAGCTAGG
GTTGGAGGAAGCGGCGGAGGTTGATGAGGAGTTCTTGGCCGCGCTGGAGA
GAGGAATGCCTCCGACAGGGGGATTGGGGATTGGCCTTGATAGGCTGGTG
ATGCTCTTTGGTGATGCACCGTCAATTAAGGATGTGATTGCCTTCCCGCT
GTTGAGGAAGGAGGATTAG

protein sequence of NO01G01770.1

>NO01G01770.1-protein ID=NO01G01770.1-protein|Name=NO01G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MLLRPALRTAAVTATAYPRASLTRTLLVRMQSGGDGADATAPPKKPKQQQ
KQKGGGKQPKVEEELLTGAALTAKENEIKQDRLVKARAMEAEGRTAFATT
YRVTATVASINEKWAALEPGVEDEEADVSVAGRIMARRVFGKLAFFTLQD
DSGVIQLYLDKGRLEEEFTKLKAWTDSGDIVGVRGSVKRTEKGEISVYAR
EWTMLTKSLLPLPDKWHGLTDVNKRYRQRETDLIVNPHVKEMFRLRAKMF
SGIRRMLDDKGFLEIETPILQTHPGGADARPFKTFHNSLDMDLTLRIATE
LHLKRLVVGGFDRVYELGRIFRNEGISTRHNPEFTSIELYQAYSDYHDMM
DLTEEVISGLATKLLQTETLTYQNTTINFQRPWRRATMHELVAEKLPGNF
DLATLRDSSPESLEKAKEIARAASVPEIETCISVGHVVQACFEELCEADL
IQPTFVIDHPVEVSPLAKPHRSKPGLTERFELFVYGRELANAFSELTDPV
DQRRRFEEQVERKAKLGLEEAAEVDEEFLAALERGMPPTGGLGIGLDRLV
MLFGDAPSIKDVIAFPLLRKED*

mRNA from alignment at chr1:449762..451480-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G01770.1 ID=NO01G01770.1|Name=NO01G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp|location=Sequence derived from alignment at chr1:449762..451480- (Nannochloropsis oceanica)
ATGCTCTTGAGACCAGCTCTGCGGACAGCGGCTGTTACGGCGACAGCATA
CCCTCGTGCCTCTCTGACTCGCACGCTGCTGGTGCGCATGCAAAGTGGGG
GAGACGGCGCAGACGCCACCGCTCCCCCCAAGAAGCCGAAGCAGCAACAA
AAGCAAAAAGGCGGCGGCAAGCAACCTAAAGTGGAAGAGGAGCTCTTAAC
AGGCGCAGCATTGACAGCGAAGGAGAACGAGATAAAGCAGGATAGGTTGG
TCAAGGCCCGGGCCATGGAAGCGGAGGGCCGAACGGCATTTGCCACAACC
TACCGGGTAACGGCGACGGTGGCCTCGATCAACGAGAAATGGGCTGCCCT
TGAACCTGGGGTTGAGGACGAGGAGGCTGATGTATCGGTGGCGGGGCGGA
TAATGGCGCGACGGGTGTTTGGGAAGCTAGCGTTTTTTACCTTGCAAGAC
GACAGTGGGGTCATTCAGTTGTACTTGGACAAGGGAAGGTTGGAGGAGGA
GTTTACGAAGCTGAAGGCATGGACGGATAGTGGAGATATTGTGGGAGTGC
GGGGGTCGGTGAAACGAACAGAGAAGGGGGAGATTTCGGTATATGCCAGG
GAGTGGACAATGCTGACCAAGTCTCTCTTACCTCTGCCTGATAAATGGCA
TGGGCTCACGGATGTGAATAAGCGATATAGGCAGAGGGAGACTGATTTAA
TTGTGAACCCGCATGTGAAAGAAATGTTTCGGCTGCGTGCTAAGATGTTT
TCTGGTATTCGGAGGATGCTTGATGATAAGGGTTTTCTGGAGATAGAGAC
GCCTATCTTACAGACTCACCCCGGGGGGGCCGATGCCAGGCCTTTCAAGA
CGTTCCACAACAGTCTGGACATGGATTTGACCTTACGGATTGCGACGGAA
TTGCATCTGAAAAGATTGGTGGTGGGGGGTTTTGATCGGGTGTATGAGCT
GGGGCGTATTTTTAGGAACGAGGGTATCTCGACGAGGCATAACCCGGAGT
TTACTTCCATTGAGTTGTATCAGGCCTACAGCGACTATCACGACATGATG
GATTTAACCGAGGAGGTCATCAGTGGTCTGGCTACAAAACTCTTACAAAC
TGAGACCCTGACGTATCAGAATACCACCATTAACTTTCAACGTCCCTGGC
GACGCGCTACCATGCATGAACTGGTCGCGGAGAAGCTACCCGGAAATTTT
GATTTGGCAACACTGCGAGACAGTAGTCCCGAGAGTCTCGAAAAAGCCAA
AGAGATAGCACGTGCGGCCAGTGTTCCTGAAATTGAAACTTGTATCAGTG
TTGGTCATGTGGTCCAGGCGTGTTTCGAAGAGCTGTGTGAGGCTGACTTG
ATTCAACCAACCTTTGTGATTGATCATCCTGTGGAGGTCTCTCCGCTGGC
GAAGCCGCATAGGAGCAAGCCAGGACTGACGGAGCGATTTGAGTTGTTCG
TGTATGGGAGGGAGTTGGCGAATGCTTTTTCGGAGCTGACGGACCCCGTA
GATCAGAGGAGGCGGTTCGAGGAGCAGGTCGAGAGGAAGGCGAAGCTAGG
GTTGGAGGAAGCGGCGGAGGTTGATGAGGAGTTCTTGGCCGCGCTGGAGA
GAGGAATGCCTCCGACAGGGGGATTGGGGATTGGCCTTGATAGGCTGGTG
ATGCTCTTTGGTGATGCACCGTCAATTAAGGATGTGATTGCCTTCCCGCT
GTTGAGGAAGGAGGATTAG

Coding sequence (CDS) from alignment at chr1:449762..451480-

>NO01G01770.1 ID=NO01G01770.1|Name=NO01G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr1:449762..451480- (Nannochloropsis oceanica)
ATGCTCTTGAGACCAGCTCTGCGGACAGCGGCTGTTACGGCGACAGCATA
CCCTCGTGCCTCTCTGACTCGCACGCTGCTGGTGCGCATGCAAAGTGGGG
GAGACGGCGCAGACGCCACCGCTCCCCCCAAGAAGCCGAAGCAGCAACAA
AAGCAAAAAGGCGGCGGCAAGCAACCTAAAGTGGAAGAGGAGCTCTTAAC
AGGCGCAGCATTGACAGCGAAGGAGAACGAGATAAAGCAGGATAGGTTGG
TCAAGGCCCGGGCCATGGAAGCGGAGGGCCGAACGGCATTTGCCACAACC
TACCGGGTAACGGCGACGGTGGCCTCGATCAACGAGAAATGGGCTGCCCT
TGAACCTGGGGTTGAGGACGAGGAGGCTGATGTATCGGTGGCGGGGCGGA
TAATGGCGCGACGGGTGTTTGGGAAGCTAGCGTTTTTTACCTTGCAAGAC
GACAGTGGGGTCATTCAGTTGTACTTGGACAAGGGAAGGTTGGAGGAGGA
GTTTACGAAGCTGAAGGCATGGACGGATAGTGGAGATATTGTGGGAGTGC
GGGGGTCGGTGAAACGAACAGAGAAGGGGGAGATTTCGGTATATGCCAGG
GAGTGGACAATGCTGACCAAGTCTCTCTTACCTCTGCCTGATAAATGGCA
TGGGCTCACGGATGTGAATAAGCGATATAGGCAGAGGGAGACTGATTTAA
TTGTGAACCCGCATGTGAAAGAAATGTTTCGGCTGCGTGCTAAGATGTTT
TCTGGTATTCGGAGGATGCTTGATGATAAGGGTTTTCTGGAGATAGAGAC
GCCTATCTTACAGACTCACCCCGGGGGGGCCGATGCCAGGCCTTTCAAGA
CGTTCCACAACAGTCTGGACATGGATTTGACCTTACGGATTGCGACGGAA
TTGCATCTGAAAAGATTGGTGGTGGGGGGTTTTGATCGGGTGTATGAGCT
GGGGCGTATTTTTAGGAACGAGGGTATCTCGACGAGGCATAACCCGGAGT
TTACTTCCATTGAGTTGTATCAGGCCTACAGCGACTATCACGACATGATG
GATTTAACCGAGGAGGTCATCAGTGGTCTGGCTACAAAACTCTTACAAAC
TGAGACCCTGACGTATCAGAATACCACCATTAACTTTCAACGTCCCTGGC
GACGCGCTACCATGCATGAACTGGTCGCGGAGAAGCTACCCGGAAATTTT
GATTTGGCAACACTGCGAGACAGTAGTCCCGAGAGTCTCGAAAAAGCCAA
AGAGATAGCACGTGCGGCCAGTGTTCCTGAAATTGAAACTTGTATCAGTG
TTGGTCATGTGGTCCAGGCGTGTTTCGAAGAGCTGTGTGAGGCTGACTTG
ATTCAACCAACCTTTGTGATTGATCATCCTGTGGAGGTCTCTCCGCTGGC
GAAGCCGCATAGGAGCAAGCCAGGACTGACGGAGCGATTTGAGTTGTTCG
TGTATGGGAGGGAGTTGGCGAATGCTTTTTCGGAGCTGACGGACCCCGTA
GATCAGAGGAGGCGGTTCGAGGAGCAGGTCGAGAGGAAGGCGAAGCTAGG
GTTGGAGGAAGCGGCGGAGGTTGATGAGGAGTTCTTGGCCGCGCTGGAGA
GAGGAATGCCTCCGACAGGGGGATTGGGGATTGGCCTTGATAGGCTGGTG
ATGCTCTTTGGTGATGCACCGTCAATTAAGGATGTGATTGCCTTCCCGCT
GTTGAGGAAGGAGGATTAG

Synonyms

Publications