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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:429307..431137 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01700.1 vs.
Match: EWM29066.1 (hypothetical protein Naga_100024g55 [Nannochloropsis gaditana]) HSP 1 Score: 440.7 bits (1132), Expect = 6.900e-120 Identity = 268/539 (49.72%), Postives = 347/539 (64.38%), Query Frame = 0
Query: 14 CPVCGAKQGGTDAACPVLKDWVMEAKMLYIFEAVKRSAQEVDPEVRRFWRDAISHYLA-QQQSFVFAGEEIKLVYTRRGVLHALCLPRILADSDARSETRTLASMIPTCKGSSAPTRALLQHTARRLAETSIGVTRWALRTLLMSPVQAVWLYVIGHDGEYDEDIEVEEKSEDDVA-MKTFRVHVGLCHAAGKLVAAYFEQRIDVERTVSLTEDYDEEGQGEGHGANRTAMPTTSSGGACSFRQVCRLAAATFASSSSFSSTSVSSSAVAASILKKASRQDCEVLAYMMVQQGMAVLEGNYLKILCGSGKGKVVTDTDRKVLEFRLRVNKLERVLAEREVDMGQAKQRAMALHRQGLSAQAAVELWRYKKLTSLVEKLRGAVVNLVSIHYSIEGVTTDIEIFAGLRGGNEALKQQQAAARGRGLKDVMDVEDALREAQELISETNEIGMALSGPVAAGEARVGEGNEGKEEDAELLRELEALELVERE-------DKQILEEVKKQGKDEVVISYDFPDISHLPHVEGTEMEPVCRAPS 544
CPVCGA+ G C +LKDW E+KMLY FEAVK V+PEVRRFW DAI HYLA +++SFVF GEEIKL YTRR VL LCLPRIL++ D ET L+S+ P AP A L T+ L E + W +RTL++ PV+ W Y IGHDG++D+D E+ E ++ +A ++ RVHVGLC AA +LV AYF R D+ERTVSL+E DE G G+ G ++ G CSF VCR AA SS+ S++ A+ IL+ SR D EVLA +MV+ +AV EG+YLKIL G +T D+ VL+FR+RVNK++R+L +E M ++K RA LH +GLSAQA VE R+KKL + VEKLRGA+VN++SI++SIEG D+++FAGLRGGN ALKQQ+ AA+ GL V DVE+ALREAQELI E++E+G LS P+ R G + KEE ELL+ELEAL + E E +K E + + E +SYD PDISHL + G + E V R+ S
Sbjct: 12 CPVCGAQIGSPATCCKILKDWSNESKMLYYFEAVKSDECNVNPEVRRFWADAIVHYLADRKRSFVFNGEEIKLAYTRRSVLSTLCLPRILSELDTTKETCKLSSLTPCVGRVEAPLAARLWRTSWYLTEAGARFSAWTVRTLVVKPVRRAWSYAIGHDGDFDDDTEMREAEDEQIASLRASRVHVGLCEAAAELVTAYFLSRPDLERTVSLSEGGDE-GAGDVQGDGGPGGQGGATAGMCSFLHVCRRAA---------SSSPTPSASPASKILRTCSRVDGEVLATVMVRLKLAVQEGSYLKILGRGGGAGSLTAADKTVLDFRIRVNKIDRMLGAQEAQMVESKLRAAGLHSRGLSAQALVEWRRHKKLATSVEKLRGAMVNMLSIYHSIEGQHADMQVFAGLRGGNLALKQQKTAAKAMGLGGVEDVEEALREAQELIDESDELGKILSSPLM---NREGPTEDIKEE--ELLKELEALAIAEAEGQRDVDIEKDATERRRSAKEAEAAVSYDLPDISHLSPIVG-KTETVARSSS 534
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01700.1 ID=NO01G01700.1|Name=NO01G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp CAGGCACATTTACAGACGCAATTATCTGCGTGCTTGCCTCGCCGTGGAAG GAAGAAGGAGTGGTTGTGTGGAAAGCATCCGCCCATGCCAGCCGTTATGA ACGCTGCGACCGACGTCTCCTGCTGCCCCGTATGTGGCGCAAAACAAGGT GGTACGGATGCTGCTTGCCCGGTCTTGAAGGACTGGGTCATGGAAGCAAA GATGCTATACATCTTTGAGGCTGTCAAGAGGTCCGCACAGGAAGTTGACC CCGAGGTGCGGCGCTTCTGGCGCGACGCAATTTCCCACTATCTGGCCCAG CAGCAGTCATTCGTCTTTGCCGGGGAAGAAATCAAGCTGGTCTACACCCG ACGCGGCGTTCTGCACGCCTTATGCTTGCCTCGGATACTGGCGGATTCGG ACGCACGCTCAGAGACTCGTACATTGGCCAGCATGATCCCCACCTGTAAA GGAAGCAGTGCACCAACAAGGGCGCTCCTGCAGCATACCGCCCGCCGCCT AGCAGAAACAAGCATCGGGGTGACTCGATGGGCGTTGCGAACACTCTTGA TGTCGCCCGTGCAAGCAGTGTGGTTGTATGTCATTGGACATGACGGAGAA TATGATGAAGATATCGAGGTGGAGGAGAAAAGCGAGGACGACGTTGCTAT GAAGACGTTCCGCGTGCATGTCGGGCTTTGTCACGCAGCTGGCAAACTTG TTGCAGCCTATTTTGAGCAGCGGATTGACGTTGAACGGACTGTGAGCCTG ACGGAGGACTATGACGAGGAAGGACAGGGTGAGGGGCATGGTGCGAACCG AACTGCAATGCCAACGACGAGCAGCGGTGGTGCGTGTTCGTTCCGGCAGG TGTGTCGGTTAGCCGCCGCTACTTTCGCTTCGTCATCATCGTTCTCCTCT ACCAGCGTATCCTCCTCTGCGGTAGCTGCAAGTATCCTCAAAAAAGCCTC TCGGCAAGACTGTGAGGTGCTCGCCTACATGATGGTGCAACAAGGGATGG CCGTCCTGGAAGGGAATTACCTCAAGATCCTTTGTGGCAGTGGAAAAGGA AAAGTTGTCACAGATACCGATAGAAAGGTACTCGAATTTCGCTTACGCGT CAATAAGCTCGAGCGCGTTCTTGCTGAACGGGAAGTAGACATGGGCCAGG CAAAGCAGCGGGCGATGGCATTGCACCGGCAAGGGTTGAGCGCACAGGCC GCGGTGGAACTATGGCGGTACAAAAAACTAACTTCCTTAGTAGAGAAGCT GAGGGGGGCCGTGGTTAACCTGGTAAGTATTCATTATTCAATTGAGGGAG TGACAACGGATATAGAGATTTTTGCCGGACTGCGCGGGGGAAATGAGGCT CTGAAGCAGCAGCAGGCGGCGGCGAGAGGACGGGGTTTGAAGGACGTCAT GGATGTAGAAGATGCCTTGCGGGAAGCCCAGGAGCTGATTAGTGAGACAA ATGAGATTGGGATGGCTTTATCTGGACCTGTGGCCGCGGGAGAAGCACGG GTGGGAGAAGGGAACGAGGGAAAGGAGGAGGACGCGGAGTTGTTGCGGGA GTTAGAGGCACTGGAGCTTGTGGAGAGGGAGGATAAGCAAATATTGGAGG AGGTAAAGAAGCAGGGAAAGGATGAAGTGGTGATATCGTATGATTTCCCG GATATTAGCCATCTTCCTCATGTTGAGGGAACAGAAATGGAGCCGGTCTG TAGAGCGCCTTCAACGGGGAAAAAAAAACTCCTTGACTAGCAAGTTTCAC TTTCAGGGTGAGATTTTGGGATAGATTAGAGCATTAGATGGGAAAAACAA ATAGCAAAAGCACGCACCCATGTATCCAATA back to topprotein sequence of NO01G01700.1 >NO01G01700.1-protein ID=NO01G01700.1-protein|Name=NO01G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=552bp MPAVMNAATDVSCCPVCGAKQGGTDAACPVLKDWVMEAKMLYIFEAVKRS AQEVDPEVRRFWRDAISHYLAQQQSFVFAGEEIKLVYTRRGVLHALCLPR ILADSDARSETRTLASMIPTCKGSSAPTRALLQHTARRLAETSIGVTRWA LRTLLMSPVQAVWLYVIGHDGEYDEDIEVEEKSEDDVAMKTFRVHVGLCH AAGKLVAAYFEQRIDVERTVSLTEDYDEEGQGEGHGANRTAMPTTSSGGA CSFRQVCRLAAATFASSSSFSSTSVSSSAVAASILKKASRQDCEVLAYMM VQQGMAVLEGNYLKILCGSGKGKVVTDTDRKVLEFRLRVNKLERVLAERE VDMGQAKQRAMALHRQGLSAQAAVELWRYKKLTSLVEKLRGAVVNLVSIH YSIEGVTTDIEIFAGLRGGNEALKQQQAAARGRGLKDVMDVEDALREAQE LISETNEIGMALSGPVAAGEARVGEGNEGKEEDAELLRELEALELVERED KQILEEVKKQGKDEVVISYDFPDISHLPHVEGTEMEPVCRAPSTGKKKLL D* back to topmRNA from alignment at chr1:429307..431137- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01700.1 ID=NO01G01700.1|Name=NO01G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp|location=Sequence derived from alignment at chr1:429307..431137- (Nannochloropsis oceanica) CAGGCACATTTACAGACGCAATTATCTGCGTGCTTGCCTCGCCGTGGAAG
GAAGAAGGAGTGGTTGTGTGGAAAGCATCCGCCCATGCCAGCCGTTATGA
ACGCTGCGACCGACGTCTCCTGCTGCCCCGTATGTGGCGCAAAACAAGGT
GGTACGGATGCTGCTTGCCCGGTCTTGAAGGACTGGGTCATGGAAGCAAA
GATGCTATACATCTTTGAGGCTGTCAAGAGGTCCGCACAGGAAGTTGACC
CCGAGGTGCGGCGCTTCTGGCGCGACGCAATTTCCCACTATCTGGCCCAG
CAGCAGTCATTCGTCTTTGCCGGGGAAGAAATCAAGCTGGTCTACACCCG
ACGCGGCGTTCTGCACGCCTTATGCTTGCCTCGGATACTGGCGGATTCGG
ACGCACGCTCAGAGACTCGTACATTGGCCAGCATGATCCCCACCTGTAAA
GGAAGCAGTGCACCAACAAGGGCGCTCCTGCAGCATACCGCCCGCCGCCT
AGCAGAAACAAGCATCGGGGTGACTCGATGGGCGTTGCGAACACTCTTGA
TGTCGCCCGTGCAAGCAGTGTGGTTGTATGTCATTGGACATGACGGAGAA
TATGATGAAGATATCGAGGTGGAGGAGAAAAGCGAGGACGACGTTGCTAT
GAAGACGTTCCGCGTGCATGTCGGGCTTTGTCACGCAGCTGGCAAACTTG
TTGCAGCCTATTTTGAGCAGCGGATTGACGTTGAACGGACTGTGAGCCTG
ACGGAGGACTATGACGAGGAAGGACAGGGTGAGGGGCATGGTGCGAACCG
AACTGCAATGCCAACGACGAGCAGCGGTGGTGCGTGTTCGTTCCGGCAGG
TGTGTCGGTTAGCCGCCGCTACTTTCGCTTCGTCATCATCGTTCTCCTCT
ACCAGCGTATCCTCCTCTGCGGTAGCTGCAAGTATCCTCAAAAAAGCCTC
TCGGCAAGACTGTGAGGTGCTCGCCTACATGATGGTGCAACAAGGGATGG
CCGTCCTGGAAGGGAATTACCTCAAGATCCTTTGTGGCAGTGGAAAAGGA
AAAGTTGTCACAGATACCGATAGAAAGGTACTCGAATTTCGCTTACGCGT
CAATAAGCTCGAGCGCGTTCTTGCTGAACGGGAAGTAGACATGGGCCAGG
CAAAGCAGCGGGCGATGGCATTGCACCGGCAAGGGTTGAGCGCACAGGCC
GCGGTGGAACTATGGCGGTACAAAAAACTAACTTCCTTAGTAGAGAAGCT
GAGGGGGGCCGTGGTTAACCTGGTAAGTATTCATTATTCAATTGAGGGAG
TGACAACGGATATAGAGATTTTTGCCGGACTGCGCGGGGGAAATGAGGCT
CTGAAGCAGCAGCAGGCGGCGGCGAGAGGACGGGGTTTGAAGGACGTCAT
GGATGTAGAAGATGCCTTGCGGGAAGCCCAGGAGCTGATTAGTGAGACAA
ATGAGATTGGGATGGCTTTATCTGGACCTGTGGCCGCGGGAGAAGCACGG
GTGGGAGAAGGGAACGAGGGAAAGGAGGAGGACGCGGAGTTGTTGCGGGA
GTTAGAGGCACTGGAGCTTGTGGAGAGGGAGGATAAGCAAATATTGGAGG
AGGTAAAGAAGCAGGGAAAGGATGAAGTGGTGATATCGTATGATTTCCCG
GATATTAGCCATCTTCCTCATGTTGAGGGAACAGAAATGGAGCCGGTCTG
TAGAGCGCCTTCAACGGGGAAAAAAAAACTCCTTGACTAGCAAGTTTCAC
TTTCAGGGTGAGATTTTGGGATAGATTAGAGCATTAGATGGGAAAAACAA
ATAGCAAAAGCACGCACCCATGTATCCAATA back to topCoding sequence (CDS) from alignment at chr1:429307..431137- >NO01G01700.1 ID=NO01G01700.1|Name=NO01G01700.1|organism=Nannochloropsis oceanica|type=CDS|length=1656bp|location=Sequence derived from alignment at chr1:429307..431137- (Nannochloropsis oceanica) ATGCCAGCCGTTATGAACGCTGCGACCGACGTCTCCTGCTGCCCCGTATG TGGCGCAAAACAAGGTGGTACGGATGCTGCTTGCCCGGTCTTGAAGGACT GGGTCATGGAAGCAAAGATGCTATACATCTTTGAGGCTGTCAAGAGGTCC GCACAGGAAGTTGACCCCGAGGTGCGGCGCTTCTGGCGCGACGCAATTTC CCACTATCTGGCCCAGCAGCAGTCATTCGTCTTTGCCGGGGAAGAAATCA AGCTGGTCTACACCCGACGCGGCGTTCTGCACGCCTTATGCTTGCCTCGG ATACTGGCGGATTCGGACGCACGCTCAGAGACTCGTACATTGGCCAGCAT GATCCCCACCTGTAAAGGAAGCAGTGCACCAACAAGGGCGCTCCTGCAGC ATACCGCCCGCCGCCTAGCAGAAACAAGCATCGGGGTGACTCGATGGGCG TTGCGAACACTCTTGATGTCGCCCGTGCAAGCAGTGTGGTTGTATGTCAT TGGACATGACGGAGAATATGATGAAGATATCGAGGTGGAGGAGAAAAGCG AGGACGACGTTGCTATGAAGACGTTCCGCGTGCATGTCGGGCTTTGTCAC GCAGCTGGCAAACTTGTTGCAGCCTATTTTGAGCAGCGGATTGACGTTGA ACGGACTGTGAGCCTGACGGAGGACTATGACGAGGAAGGACAGGGTGAGG GGCATGGTGCGAACCGAACTGCAATGCCAACGACGAGCAGCGGTGGTGCG TGTTCGTTCCGGCAGGTGTGTCGGTTAGCCGCCGCTACTTTCGCTTCGTC ATCATCGTTCTCCTCTACCAGCGTATCCTCCTCTGCGGTAGCTGCAAGTA TCCTCAAAAAAGCCTCTCGGCAAGACTGTGAGGTGCTCGCCTACATGATG GTGCAACAAGGGATGGCCGTCCTGGAAGGGAATTACCTCAAGATCCTTTG TGGCAGTGGAAAAGGAAAAGTTGTCACAGATACCGATAGAAAGGTACTCG AATTTCGCTTACGCGTCAATAAGCTCGAGCGCGTTCTTGCTGAACGGGAA GTAGACATGGGCCAGGCAAAGCAGCGGGCGATGGCATTGCACCGGCAAGG GTTGAGCGCACAGGCCGCGGTGGAACTATGGCGGTACAAAAAACTAACTT CCTTAGTAGAGAAGCTGAGGGGGGCCGTGGTTAACCTGGTAAGTATTCAT TATTCAATTGAGGGAGTGACAACGGATATAGAGATTTTTGCCGGACTGCG CGGGGGAAATGAGGCTCTGAAGCAGCAGCAGGCGGCGGCGAGAGGACGGG GTTTGAAGGACGTCATGGATGTAGAAGATGCCTTGCGGGAAGCCCAGGAG CTGATTAGTGAGACAAATGAGATTGGGATGGCTTTATCTGGACCTGTGGC CGCGGGAGAAGCACGGGTGGGAGAAGGGAACGAGGGAAAGGAGGAGGACG CGGAGTTGTTGCGGGAGTTAGAGGCACTGGAGCTTGTGGAGAGGGAGGAT AAGCAAATATTGGAGGAGGTAAAGAAGCAGGGAAAGGATGAAGTGGTGAT ATCGTATGATTTCCCGGATATTAGCCATCTTCCTCATGTTGAGGGAACAG AAATGGAGCCGGTCTGTAGAGCGCCTTCAACGGGGAAAAAAAAACTCCTT GACTAG back to top
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