NO01G01630.1, NO01G01630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01630.1
Unique NameNO01G01630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1389
Alignment locationchr1:413680..415068 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:413680..415068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01630.1 vs.
Match: EWM29050.1 (udp-glucose 4-epimerase [Nannochloropsis gaditana])

HSP 1 Score: 487.6 bits (1254), Expect = 4.100e-134
Identity = 247/440 (56.14%), Postives = 319/440 (72.50%), Query Frame = 0 
Query:   26 LLLLFVSASEGAASTPTKKDVLVLGGNGFLGVYAVQALAHSGHYTIAIANRNTSYFDSAERLAATGVISLHWDRRHTPFGEAPEIQAYFATRPLLHAIIDFSCYTGAAAHDVATYLLEADVQVEWYVYISSDSIYEVGSPKAHPEKPTEEGIDDHRPSSLQDQAQLNACDAYAHGKLEAEEVLQALQPASSWSYVFLRIPDVVGPRDTSYRWWFYQILLKLQSRTQVPLPYVQEDRDGRQMSLVYVKDVARAILQVLANGD-----EHDSNMSKRKASVKNTALNLAHDETWTFPQIMECIAQEVAENMSA---SPQPPQLRFPLLFALNRTTDFPSVKRGPISTLRARTLLGWEPTPWLEILHKTVEYFESEAVWQDARFVKEREGVLRMALQQVAKYDKQEEFLSAIRDVYELDVSMLDIRNAGWKADVIVEDAIWTA 458
            LL + +     ++S+P KK+VLVLGGNGF+GVY V ALA S  Y + IANRNT+YFDS ERLA+  + SLHWDRR  P  +A E+ A+F   P +HAI+DFSCY+G +A +VAT+L++ +V+V  YVY+SSDSIYEV S K   EKPT E +DDHRPS  + QA+ NA D Y HGKLEAEEVL+ LQP S+W Y+FLRIPDVVGPRDTS RWWFYQIL+ LQ    VP+PYV+EDRDGR+MSLVYVKDVARAI+ +++  D        +N+S R  +V+N A+N+A     TF QIME IA+ +A + S+   +     +  PL+FALN TTDFPSVKRGPIST RARTLLGWEPTPW E++ +TVE+F+S  +W+DAR+ KE +GVL+M  QQVAKY  +  F   +  VY L+ S + +  AG  +DVIV++  W++
Sbjct:    6 LLAISILGLASSSSSP-KKEVLVLGGNGFMGVYTVIALAFSDRYAVTIANRNTTYFDSLERLASANITSLHWDRRSEPIEDASEVVAFFEDHPHIHAIVDFSCYSGDSARNVATFLIKEEVRVGLYVYVSSDSIYEVCSAKRDLEKPTTEDVDDHRPSGPRSQAECNAADTYGHGKLEAEEVLRELQPVSTWDYIFLRIPDVVGPRDTSNRWWFYQILIDLQIWIHVPIPYVREDRDGREMSLVYVKDVARAIVSLISGHDGAFLHRWGANVSDRALTVRNVAINVADHRARTFVQIMEDIAKALATSRSSQWPTSSSSTMPSPLVFALNSTTDFPSVKRGPISTTRARTLLGWEPTPWDEVVLETVEFFQSRILWKDARYAKELQGVLQMVCQQVAKYIDERTFRDLLLKVYGLNASEMTLTCAGCASDVIVDEEPWSS 444
The following BLAST results are available for this feature:
BLAST of NO01G01630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29050.14.100e-13456.14udp-glucose 4-epimerase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01630NO01G01630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01630.1NO01G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01630.1.cds1NO01G01630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01630.1 ID=NO01G01630.1|Name=NO01G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp
ATGCCAGCCTGGCCGCCACCGCGCGCCCGGCTGATACCTCCTGTCATCTT
GTTCTTCCTTTTCTCTACCCTGCCGCTCCTACTCCTTTTTGTCTCTGCCA
GTGAAGGAGCCGCCTCAACCCCAACAAAGAAGGACGTGCTGGTACTTGGG
GGAAATGGGTTCCTTGGCGTGTATGCTGTTCAGGCCCTGGCGCATTCAGG
GCACTATACCATCGCCATTGCCAATCGCAACACGAGTTATTTCGACTCTG
CCGAGCGCTTGGCGGCGACCGGTGTGATTTCACTTCATTGGGACAGACGC
CACACGCCCTTTGGCGAAGCGCCCGAGATTCAAGCCTACTTCGCTACTCG
ACCGCTTTTACATGCCATAATCGATTTTTCGTGCTATACTGGCGCGGCGG
CCCATGATGTCGCGACCTATCTGCTGGAAGCGGACGTGCAGGTGGAGTGG
TACGTTTATATAAGCAGCGACTCCATCTACGAAGTGGGTTCGCCCAAGGC
TCATCCTGAGAAGCCCACGGAGGAGGGGATCGACGACCACCGTCCTTCTT
CACTTCAAGACCAGGCTCAGCTCAATGCTTGCGATGCCTACGCCCATGGC
AAGCTAGAGGCCGAAGAGGTGCTGCAGGCACTGCAGCCCGCCTCCAGCTG
GTCCTACGTCTTTCTGCGCATTCCCGATGTGGTAGGCCCCCGAGACACCT
CCTACCGATGGTGGTTCTATCAGATTCTGCTCAAGCTTCAATCGAGGACG
CAAGTGCCCTTGCCTTATGTGCAAGAAGATCGGGACGGGCGCCAGATGAG
TTTGGTGTATGTCAAGGACGTGGCGCGGGCTATTTTACAGGTGCTCGCGA
ATGGTGATGAACACGACAGCAATATGAGCAAGCGCAAAGCCTCGGTCAAG
AACACGGCTCTCAATCTGGCCCATGACGAAACTTGGACTTTCCCGCAAAT
CATGGAGTGCATCGCGCAAGAAGTAGCCGAGAACATGTCGGCTTCACCAC
AGCCACCACAACTACGGTTCCCCCTGCTATTTGCCCTAAATCGGACGACT
GACTTCCCTAGTGTTAAAAGGGGTCCTATCTCAACCTTGCGGGCCCGCAC
GCTGCTGGGATGGGAACCAACCCCTTGGTTGGAGATATTGCACAAGACGG
TGGAGTACTTCGAGTCAGAAGCCGTATGGCAGGACGCGCGCTTCGTCAAG
GAGAGAGAGGGAGTCCTGCGAATGGCACTCCAGCAAGTGGCAAAATATGA
TAAGCAGGAAGAGTTTCTTAGCGCGATTCGCGATGTATACGAGTTGGATG
TATCTATGTTGGACATACGCAATGCAGGGTGGAAGGCTGACGTCATTGTG
GAGGATGCAATATGGACAGCGACGCACTCGGAGCTTTAA
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protein sequence of NO01G01630.1

>NO01G01630.1-protein ID=NO01G01630.1-protein|Name=NO01G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MPAWPPPRARLIPPVILFFLFSTLPLLLLFVSASEGAASTPTKKDVLVLG
GNGFLGVYAVQALAHSGHYTIAIANRNTSYFDSAERLAATGVISLHWDRR
HTPFGEAPEIQAYFATRPLLHAIIDFSCYTGAAAHDVATYLLEADVQVEW
YVYISSDSIYEVGSPKAHPEKPTEEGIDDHRPSSLQDQAQLNACDAYAHG
KLEAEEVLQALQPASSWSYVFLRIPDVVGPRDTSYRWWFYQILLKLQSRT
QVPLPYVQEDRDGRQMSLVYVKDVARAILQVLANGDEHDSNMSKRKASVK
NTALNLAHDETWTFPQIMECIAQEVAENMSASPQPPQLRFPLLFALNRTT
DFPSVKRGPISTLRARTLLGWEPTPWLEILHKTVEYFESEAVWQDARFVK
EREGVLRMALQQVAKYDKQEEFLSAIRDVYELDVSMLDIRNAGWKADVIV
EDAIWTATHSEL*
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mRNA from alignment at chr1:413680..415068-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01630.1 ID=NO01G01630.1|Name=NO01G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp|location=Sequence derived from alignment at chr1:413680..415068- (Nannochloropsis oceanica)
ATGCCAGCCTGGCCGCCACCGCGCGCCCGGCTGATACCTCCTGTCATCTT
GTTCTTCCTTTTCTCTACCCTGCCGCTCCTACTCCTTTTTGTCTCTGCCA
GTGAAGGAGCCGCCTCAACCCCAACAAAGAAGGACGTGCTGGTACTTGGG
GGAAATGGGTTCCTTGGCGTGTATGCTGTTCAGGCCCTGGCGCATTCAGG
GCACTATACCATCGCCATTGCCAATCGCAACACGAGTTATTTCGACTCTG
CCGAGCGCTTGGCGGCGACCGGTGTGATTTCACTTCATTGGGACAGACGC
CACACGCCCTTTGGCGAAGCGCCCGAGATTCAAGCCTACTTCGCTACTCG
ACCGCTTTTACATGCCATAATCGATTTTTCGTGCTATACTGGCGCGGCGG
CCCATGATGTCGCGACCTATCTGCTGGAAGCGGACGTGCAGGTGGAGTGG
TACGTTTATATAAGCAGCGACTCCATCTACGAAGTGGGTTCGCCCAAGGC
TCATCCTGAGAAGCCCACGGAGGAGGGGATCGACGACCACCGTCCTTCTT
CACTTCAAGACCAGGCTCAGCTCAATGCTTGCGATGCCTACGCCCATGGC
AAGCTAGAGGCCGAAGAGGTGCTGCAGGCACTGCAGCCCGCCTCCAGCTG
GTCCTACGTCTTTCTGCGCATTCCCGATGTGGTAGGCCCCCGAGACACCT
CCTACCGATGGTGGTTCTATCAGATTCTGCTCAAGCTTCAATCGAGGACG
CAAGTGCCCTTGCCTTATGTGCAAGAAGATCGGGACGGGCGCCAGATGAG
TTTGGTGTATGTCAAGGACGTGGCGCGGGCTATTTTACAGGTGCTCGCGA
ATGGTGATGAACACGACAGCAATATGAGCAAGCGCAAAGCCTCGGTCAAG
AACACGGCTCTCAATCTGGCCCATGACGAAACTTGGACTTTCCCGCAAAT
CATGGAGTGCATCGCGCAAGAAGTAGCCGAGAACATGTCGGCTTCACCAC
AGCCACCACAACTACGGTTCCCCCTGCTATTTGCCCTAAATCGGACGACT
GACTTCCCTAGTGTTAAAAGGGGTCCTATCTCAACCTTGCGGGCCCGCAC
GCTGCTGGGATGGGAACCAACCCCTTGGTTGGAGATATTGCACAAGACGG
TGGAGTACTTCGAGTCAGAAGCCGTATGGCAGGACGCGCGCTTCGTCAAG
GAGAGAGAGGGAGTCCTGCGAATGGCACTCCAGCAAGTGGCAAAATATGA
TAAGCAGGAAGAGTTTCTTAGCGCGATTCGCGATGTATACGAGTTGGATG
TATCTATGTTGGACATACGCAATGCAGGGTGGAAGGCTGACGTCATTGTG
GAGGATGCAATATGGACAGCGACGCACTCGGAGCTTTAA
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Coding sequence (CDS) from alignment at chr1:413680..415068-

>NO01G01630.1 ID=NO01G01630.1|Name=NO01G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr1:413680..415068- (Nannochloropsis oceanica)
ATGCCAGCCTGGCCGCCACCGCGCGCCCGGCTGATACCTCCTGTCATCTT
GTTCTTCCTTTTCTCTACCCTGCCGCTCCTACTCCTTTTTGTCTCTGCCA
GTGAAGGAGCCGCCTCAACCCCAACAAAGAAGGACGTGCTGGTACTTGGG
GGAAATGGGTTCCTTGGCGTGTATGCTGTTCAGGCCCTGGCGCATTCAGG
GCACTATACCATCGCCATTGCCAATCGCAACACGAGTTATTTCGACTCTG
CCGAGCGCTTGGCGGCGACCGGTGTGATTTCACTTCATTGGGACAGACGC
CACACGCCCTTTGGCGAAGCGCCCGAGATTCAAGCCTACTTCGCTACTCG
ACCGCTTTTACATGCCATAATCGATTTTTCGTGCTATACTGGCGCGGCGG
CCCATGATGTCGCGACCTATCTGCTGGAAGCGGACGTGCAGGTGGAGTGG
TACGTTTATATAAGCAGCGACTCCATCTACGAAGTGGGTTCGCCCAAGGC
TCATCCTGAGAAGCCCACGGAGGAGGGGATCGACGACCACCGTCCTTCTT
CACTTCAAGACCAGGCTCAGCTCAATGCTTGCGATGCCTACGCCCATGGC
AAGCTAGAGGCCGAAGAGGTGCTGCAGGCACTGCAGCCCGCCTCCAGCTG
GTCCTACGTCTTTCTGCGCATTCCCGATGTGGTAGGCCCCCGAGACACCT
CCTACCGATGGTGGTTCTATCAGATTCTGCTCAAGCTTCAATCGAGGACG
CAAGTGCCCTTGCCTTATGTGCAAGAAGATCGGGACGGGCGCCAGATGAG
TTTGGTGTATGTCAAGGACGTGGCGCGGGCTATTTTACAGGTGCTCGCGA
ATGGTGATGAACACGACAGCAATATGAGCAAGCGCAAAGCCTCGGTCAAG
AACACGGCTCTCAATCTGGCCCATGACGAAACTTGGACTTTCCCGCAAAT
CATGGAGTGCATCGCGCAAGAAGTAGCCGAGAACATGTCGGCTTCACCAC
AGCCACCACAACTACGGTTCCCCCTGCTATTTGCCCTAAATCGGACGACT
GACTTCCCTAGTGTTAAAAGGGGTCCTATCTCAACCTTGCGGGCCCGCAC
GCTGCTGGGATGGGAACCAACCCCTTGGTTGGAGATATTGCACAAGACGG
TGGAGTACTTCGAGTCAGAAGCCGTATGGCAGGACGCGCGCTTCGTCAAG
GAGAGAGAGGGAGTCCTGCGAATGGCACTCCAGCAAGTGGCAAAATATGA
TAAGCAGGAAGAGTTTCTTAGCGCGATTCGCGATGTATACGAGTTGGATG
TATCTATGTTGGACATACGCAATGCAGGGTGGAAGGCTGACGTCATTGTG
GAGGATGCAATATGGACAGCGACGCACTCGGAGCTTTAA
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Synonyms
Publications