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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:400327..401757 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01590.1 vs.
Match: EWM29049.1 (DNA glycosylase [Nannochloropsis gaditana]) HSP 1 Score: 464.9 bits (1195), Expect = 3.000e-127 Identity = 268/429 (62.47%), Postives = 304/429 (70.86%), Query Frame = 0
Query: 52 RSTPGKSSRGKGKAMAYIKKEEDVEEKAAAATTTTTTRSSSRPRRVREETPTPSSAAAASFLAKRAKNE---KQDESGAFFTTINDDDKAA-LQDLLKKWIQPGTLLKITASETSPYPQQERPTPYEALYARDLLAALHGEPEREKLEGNRSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFDNLKKHFPTYKQVLAAKPGEVEEVIKFAGLSEIKVGRIRAILTTVLKERPNDCVAGEPSLEFLREMPTEEIKEYLGNFKGVGPKTIACVLLFTIGVDDFAVDTHVWHIAKRLGWVPGAASREDTYKHLNNRIPDCVKYSLHVLLVLHGKKCVSCCKGRTQLAPDGPCPLGRVGKMRGELAGLAAAAATAAATTTVACGGVVVGCNNCDKAGVVVKKVMKGREDVGGRKRDKIKAITIKEEIA 477
++TP S +GK + +KKEE E+ + T PRR R++ S+ S +K+ K E K+ S I+D D+ ++ LL KW PGT +KITASE SPYPQQ RPTP+EALY RDLLA LHGEPER+ LE N SGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAF+NLK +PTYKQVLAA PG VEE IKFAGLS+IKVGRIRAIL TVL+E P C GEPSLEFLR +PT IKEYL FKGVGPKTIACVLLFTIG DDFAVDTHVWHIAK+LGWVPGAASRED YKHLNNR+PD +KY+LHVLLVLHGKKC SCCKGRTQLAPDGPCPLG++ KMR EL A AAA AA V V + + K + KG+ G R K I +KEE A
Sbjct: 74 KTTPNASGE-EGKKVGVVKKEETEED-----SKVTGAVDGYMPRRSRDKAL--GSSLVESLSSKKIKLEAESKRKPSACPDKLIHDADEVLKIKALLDKWTGPGTSIKITASEISPYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKGRTQLAPDGPCPLGKLQKMREELV-KAEAAAMEAAAARVGLAHVKKEEESVTQNTARQKSINKGKG--GARAAVVKKEIVVKEEWA 491
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01590.1 ID=NO01G01590.1|Name=NO01G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp ATGGCGGGTCCAGTCGCGGTCAAGCAAGAGCCCGCTTGCAGCAGCACCAG AAGCAGCAGCATCAATAGCAGCGGCAAAGACAACAAGCGCGGGGGGGGTT GGGAGGCATGCCAGGCACATGACAACGCCGTCGCCACGGCGACCACCACC ACCCGCAGCACGCCGGGTAAGAGCAGTAGGGGGAAGGGGAAGGCCATGGC TTACATCAAGAAGGAGGAAGACGTGGAAGAAAAGGCCGCGGCTGCTACCA CGACGACGACGACGAGGAGCAGCAGCAGGCCACGCCGCGTCCGCGAGGAG ACACCTACGCCCTCTTCAGCGGCTGCTGCATCTTTCCTCGCTAAGAGAGC CAAGAATGAAAAGCAGGATGAGAGCGGCGCTTTTTTTACCACTATCAACG ACGACGACAAGGCAGCCCTCCAAGACCTGCTGAAAAAATGGATCCAACCC GGAACGCTCCTTAAAATCACGGCCAGTGAGACAAGCCCTTATCCACAGCA GGAACGCCCAACTCCTTATGAGGCCCTGTATGCCCGTGACCTTCTCGCGG CTTTACACGGAGAGCCGGAGCGGGAAAAGTTAGAAGGGAATCGCAGTGGT CAGGGGACGTTGCTTGAGAAGAGGGCTCGCTCGGTGTTGGACTCGTTGGT ACGGACGATACTTAGTCAGAATACGACTGATGCACTGAGTAAGCGGGCTT TCGATAATTTGAAGAAACATTTTCCGACCTATAAGCAAGTTCTGGCGGCC AAGCCTGGAGAGGTGGAGGAGGTGATCAAGTTTGCCGGGTTGTCTGAGAT TAAAGTGGGGAGAATCCGCGCGATTTTGACGACCGTGTTGAAGGAACGAC CGAATGACTGCGTGGCTGGAGAACCAAGCCTGGAGTTTTTGCGAGAGATG CCCACAGAGGAGATTAAGGAGTATCTAGGGAATTTCAAGGGAGTTGGCCC TAAAACGATTGCATGCGTGCTCTTGTTCACCATCGGCGTGGATGATTTTG CAGTGGATACGCATGTGTGGCACATTGCCAAGAGGCTGGGATGGGTGCCA GGGGCAGCTTCTCGGGAAGATACATACAAACATTTGAATAATCGCATTCC GGACTGTGTTAAGTACAGCTTGCATGTGTTGCTGGTGCTGCATGGGAAGA AGTGCGTGTCCTGCTGTAAGGGTCGAACACAACTGGCCCCCGATGGCCCC TGTCCGTTGGGGAGGGTCGGGAAAATGAGGGGAGAGCTAGCGGGGTTGGC TGCCGCTGCTGCTACAGCTGCTGCTACTACTACTGTTGCTTGTGGTGGTG TTGTTGTTGGTTGCAATAATTGTGATAAAGCAGGGGTCGTGGTGAAGAAG GTGATGAAGGGCAGGGAGGATGTCGGGGGGAGGAAGAGGGATAAGATCAA GGCTATTACCATAAAGGAAGAAATTGCGTGA back to topprotein sequence of NO01G01590.1 >NO01G01590.1-protein ID=NO01G01590.1-protein|Name=NO01G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp MAGPVAVKQEPACSSTRSSSINSSGKDNKRGGGWEACQAHDNAVATATTT TRSTPGKSSRGKGKAMAYIKKEEDVEEKAAAATTTTTTRSSSRPRRVREE TPTPSSAAAASFLAKRAKNEKQDESGAFFTTINDDDKAALQDLLKKWIQP GTLLKITASETSPYPQQERPTPYEALYARDLLAALHGEPEREKLEGNRSG QGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFDNLKKHFPTYKQVLAA KPGEVEEVIKFAGLSEIKVGRIRAILTTVLKERPNDCVAGEPSLEFLREM PTEEIKEYLGNFKGVGPKTIACVLLFTIGVDDFAVDTHVWHIAKRLGWVP GAASREDTYKHLNNRIPDCVKYSLHVLLVLHGKKCVSCCKGRTQLAPDGP CPLGRVGKMRGELAGLAAAAATAAATTTVACGGVVVGCNNCDKAGVVVKK VMKGREDVGGRKRDKIKAITIKEEIA* back to topmRNA from alignment at chr1:400327..401757- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01590.1 ID=NO01G01590.1|Name=NO01G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp|location=Sequence derived from alignment at chr1:400327..401757- (Nannochloropsis oceanica) ATGGCGGGTCCAGTCGCGGTCAAGCAAGAGCCCGCTTGCAGCAGCACCAG
AAGCAGCAGCATCAATAGCAGCGGCAAAGACAACAAGCGCGGGGGGGGTT
GGGAGGCATGCCAGGCACATGACAACGCCGTCGCCACGGCGACCACCACC
ACCCGCAGCACGCCGGGTAAGAGCAGTAGGGGGAAGGGGAAGGCCATGGC
TTACATCAAGAAGGAGGAAGACGTGGAAGAAAAGGCCGCGGCTGCTACCA
CGACGACGACGACGAGGAGCAGCAGCAGGCCACGCCGCGTCCGCGAGGAG
ACACCTACGCCCTCTTCAGCGGCTGCTGCATCTTTCCTCGCTAAGAGAGC
CAAGAATGAAAAGCAGGATGAGAGCGGCGCTTTTTTTACCACTATCAACG
ACGACGACAAGGCAGCCCTCCAAGACCTGCTGAAAAAATGGATCCAACCC
GGAACGCTCCTTAAAATCACGGCCAGTGAGACAAGCCCTTATCCACAGCA
GGAACGCCCAACTCCTTATGAGGCCCTGTATGCCCGTGACCTTCTCGCGG
CTTTACACGGAGAGCCGGAGCGGGAAAAGTTAGAAGGGAATCGCAGTGGT
CAGGGGACGTTGCTTGAGAAGAGGGCTCGCTCGGTGTTGGACTCGTTGGT
ACGGACGATACTTAGTCAGAATACGACTGATGCACTGAGTAAGCGGGCTT
TCGATAATTTGAAGAAACATTTTCCGACCTATAAGCAAGTTCTGGCGGCC
AAGCCTGGAGAGGTGGAGGAGGTGATCAAGTTTGCCGGGTTGTCTGAGAT
TAAAGTGGGGAGAATCCGCGCGATTTTGACGACCGTGTTGAAGGAACGAC
CGAATGACTGCGTGGCTGGAGAACCAAGCCTGGAGTTTTTGCGAGAGATG
CCCACAGAGGAGATTAAGGAGTATCTAGGGAATTTCAAGGGAGTTGGCCC
TAAAACGATTGCATGCGTGCTCTTGTTCACCATCGGCGTGGATGATTTTG
CAGTGGATACGCATGTGTGGCACATTGCCAAGAGGCTGGGATGGGTGCCA
GGGGCAGCTTCTCGGGAAGATACATACAAACATTTGAATAATCGCATTCC
GGACTGTGTTAAGTACAGCTTGCATGTGTTGCTGGTGCTGCATGGGAAGA
AGTGCGTGTCCTGCTGTAAGGGTCGAACACAACTGGCCCCCGATGGCCCC
TGTCCGTTGGGGAGGGTCGGGAAAATGAGGGGAGAGCTAGCGGGGTTGGC
TGCCGCTGCTGCTACAGCTGCTGCTACTACTACTGTTGCTTGTGGTGGTG
TTGTTGTTGGTTGCAATAATTGTGATAAAGCAGGGGTCGTGGTGAAGAAG
GTGATGAAGGGCAGGGAGGATGTCGGGGGGAGGAAGAGGGATAAGATCAA
GGCTATTACCATAAAGGAAGAAATTGCGTGA back to topCoding sequence (CDS) from alignment at chr1:400327..401757- >NO01G01590.1 ID=NO01G01590.1|Name=NO01G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=1431bp|location=Sequence derived from alignment at chr1:400327..401757- (Nannochloropsis oceanica) ATGGCGGGTCCAGTCGCGGTCAAGCAAGAGCCCGCTTGCAGCAGCACCAG AAGCAGCAGCATCAATAGCAGCGGCAAAGACAACAAGCGCGGGGGGGGTT GGGAGGCATGCCAGGCACATGACAACGCCGTCGCCACGGCGACCACCACC ACCCGCAGCACGCCGGGTAAGAGCAGTAGGGGGAAGGGGAAGGCCATGGC TTACATCAAGAAGGAGGAAGACGTGGAAGAAAAGGCCGCGGCTGCTACCA CGACGACGACGACGAGGAGCAGCAGCAGGCCACGCCGCGTCCGCGAGGAG ACACCTACGCCCTCTTCAGCGGCTGCTGCATCTTTCCTCGCTAAGAGAGC CAAGAATGAAAAGCAGGATGAGAGCGGCGCTTTTTTTACCACTATCAACG ACGACGACAAGGCAGCCCTCCAAGACCTGCTGAAAAAATGGATCCAACCC GGAACGCTCCTTAAAATCACGGCCAGTGAGACAAGCCCTTATCCACAGCA GGAACGCCCAACTCCTTATGAGGCCCTGTATGCCCGTGACCTTCTCGCGG CTTTACACGGAGAGCCGGAGCGGGAAAAGTTAGAAGGGAATCGCAGTGGT CAGGGGACGTTGCTTGAGAAGAGGGCTCGCTCGGTGTTGGACTCGTTGGT ACGGACGATACTTAGTCAGAATACGACTGATGCACTGAGTAAGCGGGCTT TCGATAATTTGAAGAAACATTTTCCGACCTATAAGCAAGTTCTGGCGGCC AAGCCTGGAGAGGTGGAGGAGGTGATCAAGTTTGCCGGGTTGTCTGAGAT TAAAGTGGGGAGAATCCGCGCGATTTTGACGACCGTGTTGAAGGAACGAC CGAATGACTGCGTGGCTGGAGAACCAAGCCTGGAGTTTTTGCGAGAGATG CCCACAGAGGAGATTAAGGAGTATCTAGGGAATTTCAAGGGAGTTGGCCC TAAAACGATTGCATGCGTGCTCTTGTTCACCATCGGCGTGGATGATTTTG CAGTGGATACGCATGTGTGGCACATTGCCAAGAGGCTGGGATGGGTGCCA GGGGCAGCTTCTCGGGAAGATACATACAAACATTTGAATAATCGCATTCC GGACTGTGTTAAGTACAGCTTGCATGTGTTGCTGGTGCTGCATGGGAAGA AGTGCGTGTCCTGCTGTAAGGGTCGAACACAACTGGCCCCCGATGGCCCC TGTCCGTTGGGGAGGGTCGGGAAAATGAGGGGAGAGCTAGCGGGGTTGGC TGCCGCTGCTGCTACAGCTGCTGCTACTACTACTGTTGCTTGTGGTGGTG TTGTTGTTGGTTGCAATAATTGTGATAAAGCAGGGGTCGTGGTGAAGAAG GTGATGAAGGGCAGGGAGGATGTCGGGGGGAGGAAGAGGGATAAGATCAA GGCTATTACCATAAAGGAAGAAATTGCGTGA back to top
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