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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:289094..290679 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01140.1 vs.
Match: EWM29043.1 (gtp cyclohydrolase ii [Nannochloropsis gaditana]) HSP 1 Score: 304.7 bits (779), Expect = 4.400e-79 Identity = 212/425 (49.88%), Postives = 271/425 (63.76%), Query Frame = 0
Query: 1 MTNNPLKLDCLQKLGITVSKVVPIVVAPNPFNERYLITKAERMSHTLSPTLALPRTVVVPPSPPSSPSQGRLLTRK--KTEVRGSPRVTRRTTAEEGGKEGGQKQQAKIEAVAAAQVAAPPALAAATAAAGAGRKWDYGQVQVKKALAHLNDGKAIVLVDRHMDPSSSSSSSS---SSSSSSNRVLGGDLVLLANKASEEVLSLYLQATSGIVFCLLPPERLAELWKGSGAAATAAGLDVKATIST--GGGRGGAAGARGRRSAAEGRAATLRALGREGG---REGG-----LSLSDFSTPGHIFVVSPGAAIGTAEDCAKKGLVRPSSINVRRGWALEMARLAREEGER-EGGREGG-GDAAVAVAELIDQGTGEGLDVEGSEDFARRHGLVIISVQDLLRFVREDVE----EGEEEVAEEEKG 405
MTNNPLKL+CL KLG+ VSKVVPIVVAPN FNERYLITKAERM+HTLSP LAL R++VVPP+P ++ +G K K ++ ++R+ K G +Q + EA +V A +G + D G +V+ AL L +G+ +VL+D+ +S ++ + +S S +G DLV+LA+ AS+E LSL+L+ SG+ +CLLPP RL LWKGSGAAATAAGLD+K ++ GRG G+RG SAA RAATLRALG G REG LSLSDFS+PGH+FVVSPGAAIGTAED A +GL RPSS++VRR WALEMAR E+ + E REGG +V VAEL+D+ TGEG+ VE HGL + SV+ + RFV E + EG V EEE+G
Sbjct: 322 MTNNPLKLECLLKLGVRVSKVVPIVVAPNVFNERYLITKAERMAHTLSPALALQRSLVVPPAPATAGMRGGDSGEKQEKADISREILLSRKRKGVRTWK--GVRQPEEGEATGRKEVGP----GRTDAGVSSGGREDAGLGEVEHALRSLREGRVVVLLDKTPGAASGATERAPDGENSGSDTHGIGADLVVLAHMASKETLSLFLRTISGVTYCLLPPARLTALWKGSGAAATAAGLDLKDSVLALWEEGRGNEDGSRGS-SAARKRAATLRALGGGDGVGEREGAGGVRELSLSDFSSPGHVFVVSPGAAIGTAEDKAMRGLARPSSVSVRREWALEMARWMEEKADSGEWKREGGTAGVSVGVAELVDRETGEGMTVEEVAALVEEHGLAVTSVEKVARFVHERQQQITTEGTVRVEEEEEG 739
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01140.1 ID=NO01G01140.1|Name=NO01G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp ATGACCAACAACCCACTGAAGCTGGATTGTCTGCAGAAATTGGGAATAAC CGTGTCTAAGGTGGTGCCCATCGTGGTGGCGCCCAATCCTTTCAATGAGC GGTACCTCATTACCAAAGCTGAGCGGATGTCACACACCCTCTCCCCCACC CTCGCCCTTCCGCGAACCGTCGTCGTCCCTCCCTCCCCCCCTTCTTCGCC CTCACAAGGGCGGTTGCTGACCCGCAAAAAGACAGAAGTCAGAGGAAGTC CGAGGGTTACCCGGAGGACCACGGCTGAGGAGGGAGGGAAGGAGGGAGGC CAAAAGCAGCAAGCAAAGATAGAAGCTGTGGCAGCAGCACAAGTAGCAGC GCCACCAGCTCTTGCAGCTGCAACAGCAGCTGCAGGAGCAGGAAGGAAAT GGGATTATGGTCAGGTGCAAGTCAAAAAAGCGCTTGCTCATTTGAATGAC GGGAAGGCCATCGTCCTGGTCGACCGCCACATGGACCCTAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGAGTGCTGGGTGGGG ATTTGGTGCTGCTGGCGAATAAGGCTTCAGAAGAAGTCCTTTCTCTGTAC TTACAGGCAACCAGCGGGATTGTGTTTTGTTTATTGCCGCCCGAACGACT TGCTGAGCTCTGGAAAGGGAGTGGTGCCGCTGCCACTGCTGCAGGGTTAG ATGTTAAGGCGACAATTTCAACAGGAGGAGGACGAGGAGGAGCAGCAGGA GCAAGAGGCAGACGTTCGGCGGCTGAGGGAAGGGCGGCGACCTTGCGAGC GTTGGGGAGGGAGGGAGGGAGGGAGGGAGGATTGTCACTGAGTGATTTTT CGACCCCGGGGCACATTTTTGTGGTGTCGCCGGGGGCAGCGATAGGGACG GCGGAAGATTGTGCGAAGAAGGGACTGGTGCGACCGTCCTCCATCAATGT GAGGAGGGGGTGGGCATTGGAGATGGCGCGGTTGGCAAGGGAGGAGGGAG AGAGGGAAGGAGGGAGGGAAGGAGGGGGGGATGCAGCGGTAGCGGTGGCG GAACTGATCGATCAGGGGACGGGGGAAGGGTTGGATGTAGAGGGAAGTGA GGATTTCGCCAGAAGGCACGGTCTGGTGATTATTTCGGTGCAGGATTTGC TGCGCTTCGTGAGGGAGGATGTGGAGGAGGGGGAGGAAGAGGTGGCGGAG GAGGAGAAGGGGGGAAGATAGCACAAGGTGATTTAGACAGGGAGGGAGGA AGGGAGGGAGGAAGGGAGGGAAGAACCGCGGATTTAGCCTTGCCTTTCCT CTGTAGCTGTTGCTGGCGAGGCCCTCTGATATATATACATAGCGAAATCT AGGACATGACAGCACCAAAAACACTTCTCACTGGAAGAGAGGAAACGAGG GTGTTGATTTAAATATAACAAACCCCAGAAAGAAAATCAACGGGCACCCG AA back to topprotein sequence of NO01G01140.1 >NO01G01140.1-protein ID=NO01G01140.1-protein|Name=NO01G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp MTNNPLKLDCLQKLGITVSKVVPIVVAPNPFNERYLITKAERMSHTLSPT LALPRTVVVPPSPPSSPSQGRLLTRKKTEVRGSPRVTRRTTAEEGGKEGG QKQQAKIEAVAAAQVAAPPALAAATAAAGAGRKWDYGQVQVKKALAHLND GKAIVLVDRHMDPSSSSSSSSSSSSSSNRVLGGDLVLLANKASEEVLSLY LQATSGIVFCLLPPERLAELWKGSGAAATAAGLDVKATISTGGGRGGAAG ARGRRSAAEGRAATLRALGREGGREGGLSLSDFSTPGHIFVVSPGAAIGT AEDCAKKGLVRPSSINVRRGWALEMARLAREEGEREGGREGGGDAAVAVA ELIDQGTGEGLDVEGSEDFARRHGLVIISVQDLLRFVREDVEEGEEEVAE EEKGGR* back to topmRNA from alignment at chr1:289094..290679+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01140.1 ID=NO01G01140.1|Name=NO01G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp|location=Sequence derived from alignment at chr1:289094..290679+ (Nannochloropsis oceanica) ATGACCAACAACCCACTGAAGCTGGATTGTCTGCAGAAATTGGGAATAAC
CGTGTCTAAGGTGGTGCCCATCGTGGTGGCGCCCAATCCTTTCAATGAGC
GGTAAGTTAGAGACTTGTGCCCCCTCTCTACCCTATCTCCTTCAGGAACC
CTTCTCTTCCTTCGACTGTTTTGTATGCACCATGACTGACTTCCTCCTCT
TTTCCTACCCTCCCTCCCTCCCTACCATCCCACAGGTACCTCATTACCAA
AGCTGAGCGGATGTCACACACCCTCTCCCCCACCCTCGCCCTTCCGCGAA
CCGTCGTCGTCCCTCCCTCCCCCCCTTCTTCGCCCTCACAAGGGCGGTTG
CTGACCCGCAAAAAGACAGAAGTCAGAGGAAGTCCGAGGGTTACCCGGAG
GACCACGGCTGAGGAGGGAGGGAAGGAGGGAGGCCAAAAGCAGCAAGCAA
AGATAGAAGCTGTGGCAGCAGCACAAGTAGCAGCGCCACCAGCTCTTGCA
GCTGCAACAGCAGCTGCAGGAGCAGGAAGGAAATGGGATTATGGTCAGGT
GCAAGTCAAAAAAGCGCTTGCTCATTTGAATGACGGGAAGGCCATCGTCC
TGGTCGACCGCCACATGGACCCTAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAACAGAGTGCTGGGTGGGGATTTGGTGCTGCTGGC
GAATAAGGCTTCAGAAGAAGTCCTTTCTCTGTACTTACAGGCAACCAGCG
GGATTGTGTTTTGTTTATTGCCGCCCGAACGACTTGCTGAGCTCTGGAAA
GGGAGTGGTGCCGCTGCCACTGCTGCAGGGTTAGATGTTAAGGCGACAAT
TTCAACAGGAGGAGGACGAGGAGGAGCAGCAGGAGCAAGAGGCAGACGTT
CGGCGGCTGAGGGAAGGGCGGCGACCTTGCGAGCGTTGGGGAGGGAGGGA
GGGAGGGAGGGAGGATTGTCACTGAGTGATTTTTCGACCCCGGGGCACAT
TTTTGTGGTGTCGCCGGGGGCAGCGATAGGGACGGCGGAAGATTGTGCGA
AGAAGGGACTGGTGCGACCGTCCTCCATCAATGTGAGGAGGGGGTGGGCA
TTGGAGATGGCGCGGTTGGCAAGGGAGGAGGGAGAGAGGGAAGGAGGGAG
GGAAGGAGGGGGGGATGCAGCGGTAGCGGTGGCGGAACTGATCGATCAGG
GGACGGGGGAAGGGTTGGATGTAGAGGGAAGTGAGGATTTCGCCAGAAGG
CACGGTCTGGTGATTATTTCGGTGCAGGATTTGCTGCGCTTCGTGAGGGA
GGATGTGGAGGAGGGGGAGGAAGAGGTGGCGGAGGAGGAGAAGGGGGGAA
GATAGCACAAGGTGATTTAGACAGGGAGGGAGGAAGGGAGGGAGGAAGGG
AGGGAAGAACCGCGGATTTAGCCTTGCCTTTCCTCTGTAGCTGTTGCTGG
CGAGGCCCTCTGATATATATACATAGCGAAATCTAGGACATGACAGCACC
AAAAACACTTCTCACTGGAAGAGAGGAAACGAGGGTGTTGATTTAAATAT
AACAAACCCCAGAAAGAAAATCAACGGGCACCCGAA back to topCoding sequence (CDS) from alignment at chr1:289094..290679+ >NO01G01140.1 ID=NO01G01140.1|Name=NO01G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr1:289094..290679+ (Nannochloropsis oceanica) ATGACCAACAACCCACTGAAGCTGGATTGTCTGCAGAAATTGGGAATAAC CGTGTCTAAGGTGGTGCCCATCGTGGTGGCGCCCAATCCTTTCAATGAGC GGTACCTCATTACCAAAGCTGAGCGGATGTCACACACCCTCTCCCCCACC CTCGCCCTTCCGCGAACCGTCGTCGTCCCTCCCTCCCCCCCTTCTTCGCC CTCACAAGGGCGGTTGCTGACCCGCAAAAAGACAGAAGTCAGAGGAAGTC CGAGGGTTACCCGGAGGACCACGGCTGAGGAGGGAGGGAAGGAGGGAGGC CAAAAGCAGCAAGCAAAGATAGAAGCTGTGGCAGCAGCACAAGTAGCAGC GCCACCAGCTCTTGCAGCTGCAACAGCAGCTGCAGGAGCAGGAAGGAAAT GGGATTATGGTCAGGTGCAAGTCAAAAAAGCGCTTGCTCATTTGAATGAC GGGAAGGCCATCGTCCTGGTCGACCGCCACATGGACCCTAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGAGTGCTGGGTGGGG ATTTGGTGCTGCTGGCGAATAAGGCTTCAGAAGAAGTCCTTTCTCTGTAC TTACAGGCAACCAGCGGGATTGTGTTTTGTTTATTGCCGCCCGAACGACT TGCTGAGCTCTGGAAAGGGAGTGGTGCCGCTGCCACTGCTGCAGGGTTAG ATGTTAAGGCGACAATTTCAACAGGAGGAGGACGAGGAGGAGCAGCAGGA GCAAGAGGCAGACGTTCGGCGGCTGAGGGAAGGGCGGCGACCTTGCGAGC GTTGGGGAGGGAGGGAGGGAGGGAGGGAGGATTGTCACTGAGTGATTTTT CGACCCCGGGGCACATTTTTGTGGTGTCGCCGGGGGCAGCGATAGGGACG GCGGAAGATTGTGCGAAGAAGGGACTGGTGCGACCGTCCTCCATCAATGT GAGGAGGGGGTGGGCATTGGAGATGGCGCGGTTGGCAAGGGAGGAGGGAG AGAGGGAAGGAGGGAGGGAAGGAGGGGGGGATGCAGCGGTAGCGGTGGCG GAACTGATCGATCAGGGGACGGGGGAAGGGTTGGATGTAGAGGGAAGTGA GGATTTCGCCAGAAGGCACGGTCTGGTGATTATTTCGGTGCAGGATTTGC TGCGCTTCGTGAGGGAGGATGTGGAGGAGGGGGAGGAAGAGGTGGCGGAG GAGGAGAAGGGGGGAAGATAG back to top
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