NO01G00370.2, NO01G00370.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00370.2
Unique NameNO01G00370.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1870
Alignment locationchr1:87689..90418 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:87689..90418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G00370.2 vs.
Match: XP_005855571.1 (hypothetical protein NGA_0607410 [Nannochloropsis gaditana CCMP526]; EKU20786.1 hypothetical protein NGA_0607410 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 159.8 bits (403), Expect = 9.900e-36
Identity = 83/217 (38.25%), Postives = 124/217 (57.14%), Query Frame = 0 
Query:   19 LLQYLLVLVSLACLVYADCPPDGAITATVTLSRTRVRRGKVFHITIHMDQITDWGNATVVYPGVILPMGG---HDHEDEHQHEDEHQHEDEHG----------------HEEGPAAFRSGNIRPRIWKNSISNKPQLEHEEHMVYYTIPKSYASSLPGPGTLGPKTKRTGAARHSFKMSILVRKYAEDEELEFDVGVWDGIGHEKTLCWEPDDHVHV 217
            +++Y  + +  A    ADCPPDGA+   V+ S+TRVRRG V   T+ + Q+TDWGNAT +YP +ILP+     HDH+  H H+ +H  + +H                 HE  PA FRSG I+PRIWK S SN+P  E  + +VY+ +P  YA+S+P P           A  H+F+  ++V K  E++ LEFD+ + DG+  +  +C+ P +HV +
Sbjct:    7 VMKYFTLFIVFAASARADCPPDGALQVAVSTSKTRVRRGGVTMFTLTLQQVTDWGNATAIYPALILPVDNHTDHDHDTHHDHDTDHDTDHDHDHVESARNLAGGGGGHEHEHAPAYFRSGRIKPRIWKRSRSNRPIFEAHDSLVYFMLPSDYATSVPNP------RPSASAPEHAFRFDVVVGKTLEEDHLEFDLVILDGL--DGNICFGP-EHVEI 214
The following BLAST results are available for this feature:
BLAST of NO01G00370.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855571.19.900e-3638.25hypothetical protein NGA_0607410 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00370NO01G00370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00370.2NO01G00370.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00370.2.cds1NO01G00370.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00370.2.cds2NO01G00370.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00370.2.cds3NO01G00370.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00370.2.cds4NO01G00370.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00370.2 ID=NO01G00370.2|Name=NO01G00370.2|organism=Nannochloropsis oceanica|type=mRNA|length=1870bp
ACCACAGCCATGCTTGCCTCGTCCTCTTCCAAGCTGGCTGGGAAGTTCAT
CACCACCATGGCACTGCTGCAATACCTTCTCGTCCTGGTCTCCTTGGCTT
GTCTGGTCTACGCTGACTGCCCTCCCGACGGCGCCATTACGGCCACGGTC
ACACTTAGCAGGACGCGAGTAAGGCGAGGAAAAGTCTTCCATATCACTAT
CCATATGGACCAGATCACGGATTGGGGCAATGCTACCGTTGTATACCCTG
GGGTCATTCTTCCAATGGGAGGTCACGATCATGAGGACGAACACCAGCAC
GAGGACGAACACCAGCACGAGGACGAACATGGCCACGAAGAAGGCCCGGC
CGCCTTCCGCAGTGGCAATATCAGGCCCCGCATCTGGAAAAATTCTATTT
CTAACAAGCCCCAGCTTGAGCATGAAGAACACATGGTCTATTATACCATC
CCCAAGTCGTATGCCTCCTCTTTACCAGGACCCGGGACCCTGGGGCCCAA
AACCAAAAGGACAGGGGCGGCAAGGCATAGTTTCAAGATGTCTATCTTAG
TGAGAAAGTACGCGGAAGACGAGGAGCTTGAGTTCGATGTAGGCGTGTGG
GATGGCATCGGCCATGAAAAGACACTTTGCTGGGAGCCGGATGATCATGT
GCATGTAAGGAGAGGGAAAGAAGGAGGGAGGGAGGGCGTACATTGTGCGG
TTAATTGATGTACAGGTTTGTCCAAATTCCGAACAATCTGAGGGATCCGT
TGATTAATTTTTCCGTTCCATGAAGTTGGCATGTCCAAGGTAAGTATACT
GAAAGAGGGGAAGAGGAGAGCTTGTTGGATGAAGAATCTGCGTCTTGGCT
AGGCCCGATTGGGGTATTGCTCTTGGTACGAATATGTGAGAGTAATTAAC
AAGACGGAGTGAGTGGTGATTTGAGAAGGGAAGGGCTTAAGTTCAGGAGG
GATAAACATGCACAAGGAAAGCGTAAAAGGAAAACGTGCATCGGCGAAGC
TCAGCGCCGAGGATACGTGAAACAGCAACTTTCGTGGGACTATAGATTTA
CATTAAGCATCACGCTGATCCTTTGAGCATGATGGTAAATGGGTCAGAGA
GGAAGCAGGCGAAGACATTGAAATTCCTATGCCTCATATCTCTCATTTCC
TTCCATTCCTTCACAGATTGACCTCTTCGGTAAAATTGGTGTCGACAGGC
ACGATCATTAGCTTACGTAGCCCCCAAAGCTTGCTCCGGGGCAATAAACT
TCGCTAGTGTGTCGGGGGCGTTTTTTCCCTTTGTTTATGATCGAGGATTT
TAAAAGATGGAAAATAAAAGGTTACGATTGGGGAGGCCACAAGTGGCGGC
TGCTTCCCTGAGCTAGTCACTAGCAAGAGTTTCTTAATGTTGGTAAACCT
TTCGCGGGCCAAAAATGTAATGCCTTAGAAATGTGTCGATTTGAGTGTTG
AGTGAGGACTATCGGTCTTTGCGTACGACTAAGGGATGGGAGTGTGGAGG
CGTTTCTGTTTCTGTCCCAAGGGCCTTCTCTCGAGGCTTCGCGCACAAAA
TGACCCATGAGCGTGATAGACGAAAAATCCGCCAATGTCTATACATGTCG
CGTACACAGTCACAGTACATTTATATTTCTTGTTCGCGTTTATGAAGCTT
AAATTCTAATGAGATCACACGTCGGACGACTACCGGCATCATCTAGTCAA
TCGTCAGTCATCTTTGGCCCTTCGATTATGCATGACAAGTATAATTGTCG
TCGTAGTCGTCCTTTTTACTTTTTTGGGGTTTTATCACCATTACGAGCCT
TGCCACCGACATGATGGCATCTACTTCTACCATAATGTGAGCACCAAACT
AAGCCCATCCCGTATGACGG
back to top

protein sequence of NO01G00370.2

>NO01G00370.2-protein ID=NO01G00370.2-protein|Name=NO01G00370.2|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MLASSSSKLAGKFITTMALLQYLLVLVSLACLVYADCPPDGAITATVTLS
RTRVRRGKVFHITIHMDQITDWGNATVVYPGVILPMGGHDHEDEHQHEDE
HQHEDEHGHEEGPAAFRSGNIRPRIWKNSISNKPQLEHEEHMVYYTIPKS
YASSLPGPGTLGPKTKRTGAARHSFKMSILVRKYAEDEELEFDVGVWDGI
GHEKTLCWEPDDHVHVRRGKEGGREGVHCAVN*
back to top

mRNA from alignment at chr1:87689..90418+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00370.2 ID=NO01G00370.2|Name=NO01G00370.2|organism=Nannochloropsis oceanica|type=mRNA|length=2730bp|location=Sequence derived from alignment at chr1:87689..90418+ (Nannochloropsis oceanica)
ACCACAGCCATGCTTGCCTCGTCCTCTTCCAAGCTGGCTGGGAAGTTCAT
CACCACCATGGCACTGCTGCAATACCTTCTCGTCCTGGTCTCCTTGGCTT
GTCTGGTACGTAATTACCAGGCTTCTTTTGTCGTATTTGTCTTTTATTCC
AAACACAACCATACACTGTCTTCAATTGTTGCCGCCTTCGGCAAATCCCT
CTATCCTTAGTCCTTATCTGGAGTCTATGACCTCCAAGGGATCCATCACA
TGTCATTCTATGGGGAAAATTATGAGAACTCTCAAACATGTAAATATCCC
CTCCCATCCTCCCTCCTTCCTTCCCTTCCACTTGTAGGTCTACGCTGACT
GCCCTCCCGACGGCGCCATTACGGCCACGGTCACACTTAGCAGGACGCGA
GTAAGGCGAGGAAAAGTCTTCCATATCACTATCCATATGGACCAGATCAC
GGATTGGGGCAATGCTACCGTTGTATACCCTGGGGTAGGTGAAGTGTGAG
GGAAGATGGTAGCAAGGGAGGGGGTGACAGGAGTGCTTTGGGAAGAGGCA
GGTAGACATGCTTAAGGGATACAGATAGGAGGTGGGATGCACATATGCAT
GTGAGCCCGACAGTGGAAGACGTCCTGACCACCCTCCTGGTCATATTCTC
CCACATTACCTTTCCCTTTTTCTTCCCGAACCCTTTTTTCCACCACCTAT
CACTCCTCCTGCCCTAAACTCGTATTTTTCTTATTTACTGCCTCCTCGTT
CACCACGCAGGTCATTCTTCCAATGGGAGGTCACGATCATGAGGACGAAC
ACCAGCACGAGGACGAACACCAGCACGAGGACGAACATGGCCACGAAGAA
GGCCCGGCCGCCTTCCGCAGTGGCAATATCAGGCCCCGCATCTGGAAAAA
TTCTATTTCTAACAAGCCCCAGCTTGAGCATGAAGAACACATGGTCTATT
ATACCATCCCCAAGTCGTATGCCTCCTCTTTACCAGGACCCGGGTAAGCG
CTTTTATCCTTTCCTCCCTCTCCCCTTCCCTCCTTCCCTGCATCATTCCC
CTTTCCCAGCGAATATTTCGGAATCTTCCTTGATCAACCTTACTTGTTTT
CGGTAGGAAGCGAATATTATGTCCTTCAAGGATTTGGGATGACTGCCGCT
GTACCTTTTCTCCTTCCCTCCCTCGGGTTTCTCCCTCTTGCCCGCCTTGG
TCCGTCATCCTTCCCTCCCAATTATTCATACGCTTGGAGAAGTTCTGTAC
CAGTGCCCAAGACCTAAAAAGTGGACAAGCTCTCCCCGTGTCCTTAGTTC
CTCCTCTCTTTCCCCATCATTCATTCCAATTTTCTCTCTTTTTAGGACCC
TGGGGCCCAAAACCAAAAGGACAGGGGCGGCAAGGCATAGTTTCAAGATG
TCTATCTTAGTGAGAAAGTACGCGGAAGACGAGGAGCTTGAGTTCGATGT
AGGCGTGTGGGATGGCATCGGCCATGAAAAGACACTTTGCTGGGAGCCGG
ATGATCATGTGCATGTAAGGAGAGGGAAAGAAGGAGGGAGGGAGGGCGTA
CATTGTGCGGTTAATTGATGTACAGGTTTGTCCAAATTCCGAACAATCTG
AGGGATCCGTTGATTAATTTTTCCGTTCCATGAAGTTGGCATGTCCAAGG
TAAGTATACTGAAAGAGGGGAAGAGGAGAGCTTGTTGGATGAAGAATCTG
CGTCTTGGCTAGGCCCGATTGGGGTATTGCTCTTGGTACGAATATGTGAG
AGTAATTAACAAGACGGAGTGAGTGGTGATTTGAGAAGGGAAGGGCTTAA
GTTCAGGAGGGATAAACATGCACAAGGAAAGCGTAAAAGGAAAACGTGCA
TCGGCGAAGCTCAGCGCCGAGGATACGTGAAACAGCAACTTTCGTGGGAC
TATAGATTTACATTAAGCATCACGCTGATCCTTTGAGCATGATGGTAAAT
GGGTCAGAGAGGAAGCAGGCGAAGACATTGAAATTCCTATGCCTCATATC
TCTCATTTCCTTCCATTCCTTCACAGATTGACCTCTTCGGTAAAATTGGT
GTCGACAGGCACGATCATTAGCTTACGTAGCCCCCAAAGCTTGCTCCGGG
GCAATAAACTTCGCTAGTGTGTCGGGGGCGTTTTTTCCCTTTGTTTATGA
TCGAGGATTTTAAAAGATGGAAAATAAAAGGTTACGATTGGGGAGGCCAC
AAGTGGCGGCTGCTTCCCTGAGCTAGTCACTAGCAAGAGTTTCTTAATGT
TGGTAAACCTTTCGCGGGCCAAAAATGTAATGCCTTAGAAATGTGTCGAT
TTGAGTGTTGAGTGAGGACTATCGGTCTTTGCGTACGACTAAGGGATGGG
AGTGTGGAGGCGTTTCTGTTTCTGTCCCAAGGGCCTTCTCTCGAGGCTTC
GCGCACAAAATGACCCATGAGCGTGATAGACGAAAAATCCGCCAATGTCT
ATACATGTCGCGTACACAGTCACAGTACATTTATATTTCTTGTTCGCGTT
TATGAAGCTTAAATTCTAATGAGATCACACGTCGGACGACTACCGGCATC
ATCTAGTCAATCGTCAGTCATCTTTGGCCCTTCGATTATGCATGACAAGT
ATAATTGTCGTCGTAGTCGTCCTTTTTACTTTTTTGGGGTTTTATCACCA
TTACGAGCCTTGCCACCGACATGATGGCATCTACTTCTACCATAATGTGA
GCACCAAACTAAGCCCATCCCGTATGACGG
back to top

Coding sequence (CDS) from alignment at chr1:87689..90418+

>NO01G00370.2 ID=NO01G00370.2|Name=NO01G00370.2|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr1:87689..90418+ (Nannochloropsis oceanica)
ATGCTTGCCTCGTCCTCTTCCAAGCTGGCTGGGAAGTTCATCACCACCAT
GGCACTGCTGCAATACCTTCTCGTCCTGGTCTCCTTGGCTTGTCTGGTCT
ACGCTGACTGCCCTCCCGACGGCGCCATTACGGCCACGGTCACACTTAGC
AGGACGCGAGTAAGGCGAGGAAAAGTCTTCCATATCACTATCCATATGGA
CCAGATCACGGATTGGGGCAATGCTACCGTTGTATACCCTGGGGTCATTC
TTCCAATGGGAGGTCACGATCATGAGGACGAACACCAGCACGAGGACGAA
CACCAGCACGAGGACGAACATGGCCACGAAGAAGGCCCGGCCGCCTTCCG
CAGTGGCAATATCAGGCCCCGCATCTGGAAAAATTCTATTTCTAACAAGC
CCCAGCTTGAGCATGAAGAACACATGGTCTATTATACCATCCCCAAGTCG
TATGCCTCCTCTTTACCAGGACCCGGGACCCTGGGGCCCAAAACCAAAAG
GACAGGGGCGGCAAGGCATAGTTTCAAGATGTCTATCTTAGTGAGAAAGT
ACGCGGAAGACGAGGAGCTTGAGTTCGATGTAGGCGTGTGGGATGGCATC
GGCCATGAAAAGACACTTTGCTGGGAGCCGGATGATCATGTGCATGTAAG
GAGAGGGAAAGAAGGAGGGAGGGAGGGCGTACATTGTGCGGTTAATTGA
back to top
Synonyms
Publications