rna8830, rna8830 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8830
Unique Name	rna8830
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3787
Alignment location	KK037250.1:266461..267526 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100159g1.6552.mrna
Orig protein id	gnl\|cribi\|Naga_100159g1.6552
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:266461..267526 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100159g1	gene8560	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8830	rna8830-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21874.1	cds8800	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:266461..267526+
coding sequence from alignment at KK037250.1:266461..267526+

mRNA sequence

>rna8830 ID=rna8830|Name=rna8830|organism=Nannochloropsis gaditana|type=mRNA|length=3787bp
TCATCAGGAGGGAGGAACTCTCCCGTCCCACGCGCGAAACGAATCTCATT
TTATTCCATGGTCCAACCCCACACTTTTCCATTTGTAGAAACACACGCCT
CTTCACTCCATTTAACCCGCCTCTCGGCGCCTTAAGAGCCAGGTGCAGAG
GGTGAGGCTCGAGGGCTTACTATTTCATCTTCCAACATTGATTTTGCAAC
CTCCGCCGGTTCGTCCTGCGGAAGTTTAGCTCCCACACACAGCCATGCGC
GCCGCCCATGTATCCCTCGCTTGCCTCTCCCTTCTACTTTCCATTTTCGC
CCTGACCGCAACTGGATTTTCGACATACCCCGGACAACTTGCCGGCTTTC
AGACTCTGCCTCAATCGAGGCGCCATTCTCGCCTCTTTCGCCAACAAAGA
GGCCTCCCTATAACGGCACTGCGGGCAGGTGAGAATTCCGGCACTTCGTC
CGAGGCCGGAGAAGCTGGTCGCGGTTTCGGTGCAAGCGTGAGAAGATCGA
GTAAAAAGGAAGGCGGAAGGAGCAGCGGATTGCGTCCTCGCGCGCCGAAT
GCTTTCTCCTCAATAGGAAAGTCAGTGCGCCTTCGAGGGAAATTCGGCGG
CGGTCCGATGGACATGGGCTTGTTGGATGGTTATTCGAAACTCATGGAGC
AAGCCGAAGCGGTCCAACGCCACTACAGCGGGCGCCGCCCCGTGCAAGAC
GGCGGCGGGCGACAACGAGGTGCGAAAAAAGCCGCGACTTTCCACGCCCT
GAGCTCCTACAGCCTCCACTTCCTCCGCCTTCTGGAGGAAGAGTTGGTCT
ACGAGGAAGCAGAGGTCATGCAGCGCTTGCGGTACTGGCCCCGATCGCGG
CTCATGGAGGAGGGTCTTGGGGTCTTCGGCGTGGTGGCTCGACCCCGAGG
CCGGCTCTTCAAGGAGTACATACTGCGCTTTACTCTGCCCGCGAGGAGGG
GCGGGGGGGGGCGCCGCCCTGGCAATGCCCCCGCCGGCGCCCTGGGGAAA
AAAGGCGCTTCCATGGATACTCCGCCGCAAACCTCTCGGAAGAAAGGGGA
CGCGGAGCCGCCGGGGCCCTTCCCCAGGGCGCCTCCCCTCGCGTACCACC
GGCTGGGCCCGGGCGACATCATCAGCATCACGCCGGACAAGCAGAACCCG
CTCGGGTCCGACCAAGTGATTGAAGGCCTGGTGCTGGAGCGGGGAGCGGC
CCACGTGGACGTGGTGGTCAAGGAGATTCCTCCGGGGGTGGTTTGGCGCC
GCGGAGACCCCACAGGCGGGGAGAGGTTCCGGCTCGACCTCTACCTGAAC
CGCATCTCTTTCCAGCGCATGGTGGCGGCCGTGCATCAAGTCACGGGCCT
GGAGACTGGGTACACGGTGTCTCCAGAAATTCGAGACATCCTGGTCAAAA
GCTTCGCCGAGCGCTTTGACGTGGTCGCGTCCCACCACAACGAGCGGGGC
GGGGCCGGTCTGGGGTCCGGCTCTGCGGGTCAGAACCATCACTCCCTTCT
CGCCATGTCACCTTATGCGGCCGCAGCTGCCGCAAACAAGAAGGCGGCGC
GGCAGCAGCAGAGCTTGTCGAAAAAAATGCGCGAAGACGAGGACGCTGGG
CGGGGGAAAGCTGGTGCGAGGAGCAGCAGGGGCCACCGCGACAACGGGGG
CCGTGGGAAGGCCAAGGCAGGGGCCGCCACCAAGTCATCCTGGGAGGCCC
TAGCCAGTGCCGTGCCCAAGACCTCGTTCGCCCGCAAAGCCGCCGATCAG
ATCGTCTCTCAGGAGGTGGCCCGCTTTAAGCTGAATGAGAGCCAGGAGCG
GGCCTTGCGGATGGCCTTGAGTCGGAAGCTCTCCCTCATCCAAGGGCCGC
CAGGCACGGGCAAGACCCGCACAGCCTGCCACCTGGTCAGCATTGCCGTC
AAGCTCGGCCAGCGCAGGGACGCAGGCAAGGTACTGGCCGTGGCTTTTAG
TAATGTGGCGGCGGACAACCTCTTGGAAGGCTGCCTGCGCCTCGGACTGA
ACGCTGTGCGGGTGGGACGGGCGGCGACCGTGCGCCCGGAGCTTCGGAAC
CACACCTTAGACGCGTTGCTGATGCAGCACCAGAGCGTGACTACTTTCAA
GAAAAAGCTGGAGGCAGTGCGGGGCTCGACTGCCAGAGACGTGCAGGCTG
CAAAGAGGGACTTGGAGGACGCCGAGCTGATGGCCGCCGTCTCCATCTTG
GGGAACGCCGACGTGGTGGTGTCCACCTGCGTGGGCGCAGCGAATGAGGT
CATCATCAACGCTGCCAGCGTGACGGGGGGCCTGGGCGGTAGGGGAGGCG
GGGGGGGAGGCTGGGAGGAACCGTCGTCCTTCTCCTCCGCCAGCCCTTTG
CGCGCCGTCAAGTTCCCGACCGTCATCATCGACGAGGCCTCCCAGGCCAC
GGAACCCGCCACGCTCGTGCCCCTGACGCAAGGCTGCGAGCAGCTCGTCC
TTGTCGGGGACCATTACCAGCTCCCGCCCACCATCAAGAGCATGCGCGCC
GCTCGTCACGGCCTGGGCGTCTCCCTCTTCACCCGACTGGCCATGGCTGG
CATCGAGCCCTCCTTGCTAACGGTTCAGTATCGGATGCACCCCTTCATCG
CCCAGTTTCCGTCCCAACGCTTTTACGGCGGGCTCTTGAAGTCACATCCG
GGCAACGCGCGCAAACGCCCGCGACCCGACGGCTTTCCGTGGCCCCACCC
GACACTGCCGGTTGCCTTCGTAGCGGTTGGCGGCGACGAGGAGGACACTC
ATATGGCCCCTTTCTACGAGCAGCGGACGAACGGGAACCAGACCTCGTAC
ATGAATAGAAAGGAGGCTGATGTGTTGATGGAGGTCTTGGGGGGCGTGCT
CCGGCGGCGCAATATCCAGAGCATGGACGTAGGCATCGTCACTCCCTACT
CGGCCCAAGTCAAGCATGTTACCGAGCTGGCGCAGGCACGCCTGCGTCAC
TTTAACCCGGGCGACCTGGAGATCCAAAGTGTGGACGCCTATCAGGGGCG
GGAGAAAGAACTGATTGTCATGTCCGCTGTCCGCAGCAACAAGCATGGAA
AGGTCGGGTTTCTCGGCGACTGGAGGCGCTTGAACGTGGCCATTACCCGA
GCGAAACGCGGACTCGTGGTCCTGGGGGACCCCCGCACTTTGCGGCACGA
CCCACATTGGAGCGCGTACTTGAAATGGGCGTACAAGCATGGCTGCGTCA
TGACTGTGGGAGAGCTGAGGGAGCGGCTGGACTAGGATGGAGGATGTCAG
GAGGAGAGAAATACGATAATCAGCGGCTTTAATATGCTTATACGAAAGCC
CGGAGCTAGATGTCAAAGTGGTGTACAGCAAAGTTGATATGTAGTAGTTT
CCTCAAACCCACGCTTTTGGAAAAGTTTTGTTGAGAATGAGAACAATCAG
GCATGACAGTGGAAATATCTGATACCATGACCCGTGGTTCGTTTTGCTGG
AATGTAAATGCTCGCCGCGGAAAAAGGTGCGAGGGGAAGTCGAGCTGAGG
AGGAAGATGGTTTCGCGGCGCACGATGAGTGGCTTCCAGGTCTTACAGAG
TTAACATTTCATTTGAAAAAGTGTACATATGTATCGCACAAATTCTGACG
CAAGTATTTTTTTACTGACTTGGGGTTAGTGTAGAGTTCGGGGGAACCGT
TTTTCAGCTGTTATACATAAGTGCCCCAAGTCTCAATTTGTCGAAGCAAG
TCCGTGTATCTCTATTAGCCACTAGATAAGAGAGGCATTGAAGGGAAGTA
CGGACGGAAGAAGAAAAAAACCCATTTCAGCGGTAAC

protein sequence of rna8830

>rna8830-protein ID=rna8830-protein|Name=rna8830|organism=Nannochloropsis gaditana|type=polypeptide|length=232bp
MRLFARRHLLFAALAAVGIFHANAQQTFLRSMSGADSVAAVKQSSARPAE
ALTLLEMGTVTAAVDPAGDVAPEAITPFQDMEEAKEPKKPAAADAPVAAP
ATGAAPKAPALGDPPLDAPAAPAVAAVPPVEAPAAPAEAPTAPAAPVAAD
DAPAAPAAPVAADDAPAAPAAPEAADDAPAAPAAPVAADDAPATPAAPAA
PAEAPTAPAAPVAADDAPAAPAAPVAADDAPA

mRNA from alignment at KK037250.1:266461..267526+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8830 ID=rna8830|Name=rna8830|organism=Nannochloropsis gaditana|type=mRNA|length=1066bp|location=Sequence derived from alignment at KK037250.1:266461..267526+ (Nannochloropsis gaditana)
AGCGCACACGAACACTGGTACATGCATGCACTTTTTGCACAAATCTGCTT
GACAAAATTTGTGGGTGGTGCGGTTCTTTGCTTGTTTAATGAGGACCAGC
TTATTGTTTTTCGTCCCCAATTTCCTTATAACAGTTCTCTGGAGAACAGT
CGCCTTTTCCTCAGAGCGTCCCTAATTTTCGTTTTAACAATCATACCAGG
TGGCACAAATGATATGAATCTCACCACCTCATGAAATAAAACTTAGGCTT
TCATATGTGAGCCACATTTTTGTACAACCTTACTCATTATCGGTTTTGAC
ATTTTTTCGTGCTTTCTCCACGTTCGACTCATGCAGCAGCTTTCCCTTTT
GCAACACAGACATCTGCATCATGCGTCTATTTGCTCGGCGGCATCTTCTT
TTTGCCGCTCTAGCAGCCGTTGGAATCTTTCATGCAAACGCACAGCAAAC
TTTTTTGCGGTCAATGTCGGGTGCAGATAGCGTGGCCGCTGTAAAGCAAT
CGTCAGCCCGGCCTGCCGAGGCTTTGACCCTCCTGGAGATGGGCACAGTC
ACCGCGGCCGTGGATCCTGCAGGAGATGTGGCACCTGAGGCTATTACTCC
TTTTCAGGATATGGAGGAAGCCAAAGAGCCGAAGAAACCTGCCGCAGCGG
ACGCTCCCGTGGCAGCCCCCGCCACCGGCGCCGCTCCGAAAGCCCCGGCA
TTGGGCGACCCTCCTCTTGATGCGCCCGCGGCccctgctgttgctgccgt
tCCACCGGTAGAGGCGCCTGCAGCCCCGGCAGAAGCGCCTACTgcacctg
ctgcacctgtgGCAGCTGACGAcgcacctgctgcacctgctgcacctgtg
GCAGCTGACGAcgcacctgctgcacctgctgcacctgaGGCAGCTGATGA
cgcacctgctgcacctgctgcacctgtgGCAGCTGACGACGCACCTGCTA
cacctgctgcacctgcAGCCCCGGCAGAAGCGCCTACTgcacctgctgca
cctgtgGCAGCTGACGAcgcacctgctgcacctgctgcacctgtgGCAGC
TGACGACGCACCTGCT

Coding sequence (CDS) from alignment at KK037250.1:266461..267526+

>rna8830 ID=rna8830|Name=rna8830|organism=Nannochloropsis gaditana|type=CDS|length=696bp|location=Sequence derived from alignment at KK037250.1:266461..267526+ (Nannochloropsis gaditana)
ATGCGTCTATTTGCTCGGCGGCATCTTCTTTTTGCCGCTCTAGCAGCCGT
TGGAATCTTTCATGCAAACGCACAGCAAACTTTTTTGCGGTCAATGTCGG
GTGCAGATAGCGTGGCCGCTGTAAAGCAATCGTCAGCCCGGCCTGCCGAG
GCTTTGACCCTCCTGGAGATGGGCACAGTCACCGCGGCCGTGGATCCTGC
AGGAGATGTGGCACCTGAGGCTATTACTCCTTTTCAGGATATGGAGGAAG
CCAAAGAGCCGAAGAAACCTGCCGCAGCGGACGCTCCCGTGGCAGCCCCC
GCCACCGGCGCCGCTCCGAAAGCCCCGGCATTGGGCGACCCTCCTCTTGA
TGCGCCCGCGGCccctgctgttgctgccgttCCACCGGTAGAGGCGCCTG
CAGCCCCGGCAGAAGCGCCTACTgcacctgctgcacctgtgGCAGCTGAC
GAcgcacctgctgcacctgctgcacctgtgGCAGCTGACGAcgcacctgc
tgcacctgctgcacctgaGGCAGCTGATGAcgcacctgctgcacctgctg
cacctgtgGCAGCTGACGACGCACCTGCTAcacctgctgcacctgcAGCC
CCGGCAGAAGCGCCTACTgcacctgctgcacctgtgGCAGCTGACGAcgc
acctgctgcacctgctgcacctgtgGCAGCTGACGACGCACCTGCT

Synonyms

Publications