rna3514, rna3514 (mRNA) Nannochloropsis gaditana

Overview
Namerna3514
Unique Namerna3514
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1647
Alignment locationCM002461.1:589061..591312 -

Link to JBrowse

Properties
Property NameValue
Productrme1-like gtpase atpase without a c-terminal eh domain protein
Orig transcript idgnl|cribi|Naga_100010g73.6180.mrna
Orig protein idgnl|cribi|Naga_100010g73.6180
GeneRME1L4
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:589061..591312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RME1L4gene3385Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27210.1cds3505Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3514rna3514-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3514 ID=rna3514|Name=rna3514|organism=Nannochloropsis gaditana|type=mRNA|length=1647bp
CACAGGGGCCAGACTAGCTGCATTATTCGATGCCAGACGATGGCTTCAGT
CACAGTCGACACAACATCGCGACTTTTCAGCGTACGCTGGGCCGACAGGA
CTGGTGATAATACGGCGCAAGATCACAAAAAACAAGAGGAAGTCGGGCGA
GGAGAGGCGATGGACGGAGAGGAAGTAGTGTCACGGCGTATAACCCTGTG
CGACGTCGACATCAAGTACAAGTCTCCCGCTGCATACGTTTTCCGCTCGC
ATGGATTCTTTTATCAAGTCGCTTTGACGTCCACCAACACGCTGTCGCGT
CTTAATCCAGGGACTTATGTCCTCAATTTCAGGCAATGTCAAGGATACAA
ACCGTCGCCACGCTCGCTTCGCTTTCACGTTCCAGCATTGTCGTCTACCT
CCTTCCCACTGTTCGCTTTGAAAGATGAGGACCTGTATATTGGCGTCGTC
ACGATGCAAAAACTTCATTTTCAATTCCCTCGCTCTGTCGCCCCTGGCGT
AAGCGCAATCGTTGTGGCGATTCTCGCCCTGCTTTTTGGCCTCAGGACCT
TGCAGAAACGCCAGAAGCCGCGCTCTCGCCGAGCAACGTCCTCGGCCCCC
ACGATCTCGACGCCTGTCGTTACTTCAGAGAGCTCCTTCAATCTCTCTTC
CTCCTCCTCTGCAACGTCGGGCCTCGCTTTGAAAACATCCGGGGAAACTT
CGCAGGAAGACCACTTGGCGGTGGGAAGCGGGAAAGTCCCCCCCGTGTGG
GACCTCTCAAGACATGGCTCGTCCAAAAATGTGTTCTCATCTTCGCACGC
CGGGGACCCTTTACGAAGCAAGAGCATCCACGAGCTAGAGCAGAGCTACG
CACAGCATGAAGACGAGGCACTCTCGCATGAAGCCCGTGAACGGCCGTCT
GGTGTGGAAAAGCCCCGTACGACCGCGCCTATGTATCAGCAGCGTCAAAC
CATGCGTAATGTGGAGGTAAATGGTAGAGACAGTTATCCGCCGAAGATAT
ATATACCCTCATCCACGCTGATATGTTCCCCGCCATTACCGTCGCCATCG
GAATTGGCGTCCACTACGTCGTCCCCTCCGTCCTCAGCCGTCGGCTCATC
CGAGCCTGCCCCAAGGCCACCGGCGGAGGCTACATGCTTCGACGGCGAGG
CAGGCGGGCAGGGGGAAGCAGAAGTGACTAACGAGGGGAATGAGGAGACC
CTTGGTTGGGTGGAGGAATACTGGTCTTTTGAGGGGCCAGAGCCCCGTGC
TTGTGCCTCCGTGGAAGGCAAGGAGGGAAAAGAAGACGAGAATGCAAAGG
TCAAGTTGATCGAAATCAAGAAAAGGATCGGCACGGATGACAGATAGGGT
TGTCACGACTGAGCAACATGGGCTCACAACGTGGTATGGGACTTTCCTGT
GTAATCGGCAAAGCTCTTATGATCCTCGTGTGGAGTAATTTGTCCAGGCT
TCCATTGCCATGTACACATTGTAAGAGGTCTTCCAATTGATAAAAGGCGT
GCGTTCGCTCTAGCTAGATCGCAATCGATAATCAGTAGCCTCACAAAGTT
TTTTTTCAAGATACTTTAAACGTGCACCCGACTACTTTAATTTCCTTCTC
TTTCCATTACTAAGGAAGGAAGCACGCTCTTCCCCACGAATGGTAAT
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protein sequence of rna3514

>rna3514-protein ID=rna3514-protein|Name=rna3514|organism=Nannochloropsis gaditana|type=polypeptide|length=629bp
MYFKVFLLFVESSSCTYGVETHNVTVLKKMLVHCHLAGRQRLLLRSGSPK
PSLLTLLRFVRRLPLERSLSTDDGNTTHSGTIKLDSQRRVLQRCDELQSY
LQPINDRLRGPLEKCSDKAPLLPFVFLLGNHSSGKSSFVNYVCNRPIQTA
GVAPTDDSFTIIAPGPTDIDQDGPSTIGDPDMGFAGLRHFGPDLIHHTQL
KIRAGLATTEFMLVDSPGMIDSPHASASQPSPSSLISASDKGDNTRSARN
HLDRGYDFQGVCRWFADRADVILLFFDPDKPGTTGETLSILTQSLAGMDH
KLYIVLNKADQFRKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPAAY
QRQQTSRSSRPAALGIESEIEGPSSGLGLADLERSREEVVGEVLKAPKRR
IDNVITRLADSVHLVQMHALVLEALRNDFARELWRFRAGAASLCLAGMGA
VGGGMYLGVAFQTILAFSVLYALGAGGFVYANEKMLKEHAAVLASPEGLR
LIFERLYARPVMEGDEFVNSLWKRTFPSLQIMLNTQVGRDLGKLPKVSKA
ELQEIQCILEEEVPALRRLAAPVSWTFSKYTKDRDGMPERGGKFGEIGQV
RPYCHGRQGRNHASTHENYHSWGRACFLP
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mRNA from alignment at CM002461.1:589061..591312-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3514 ID=rna3514|Name=rna3514|organism=Nannochloropsis gaditana|type=mRNA|length=2252bp|location=Sequence derived from alignment at CM002461.1:589061..591312- (Nannochloropsis gaditana)
GCGTGATCCGCCCTGTTTCTATGTTCCTCGAGCCGGGTGCGCCTTTCGGG
TAGCGAGGAAAGCCAGGAGGATCAAGCACAATGTATTTTAAGGTTTTTTT
ATTATTTGTAGAATCATCTTCGTGCACTTACGGAGTCGAAACTCACAATG
TCACAGTGCTAAAGAAGATGCTGGTGCATTGCCATCTCGCCGGTCGACAG
AGATTGCTCCTGCGGTCCGGCTCCCCCAAGCCCTCTCTGTTGACATTGCT
CCGTTTTGTTCGCCGTCTCCCATTAGAGCGCAGTCTCAGCACTGATGACG
GCAACACTACTCACAGCGGTACTATAAAATTGGACAGTCAGCGCCGCGTC
TTGCAGCGTTGTGACGAGTTGCAAAGCTATCTTCAGCCCATCAATGACCG
TTTGCGAGGGCCTCTGGAAAAATGTAGCGACAAGGCACCTTTGCTTCCGT
TCGTATTTTTGCTGGGCAATCATAGTAGTGGCAAGAGTTCTTTCGTCAAT
TATGTGTGTAATAGGCCCATCCAGACAGCAGGTGTCGCACCGACAGATGA
CAGCTTCACCATCATCGCTCCCGGACCCACGGATATCGATCAGGACGGCC
CTTCGACCATCGGCGACCCCGACATGGGCTTTGCAGGCCTTCGCCACTTT
GGGCCCGACCTGATCCATCACACTCAGCTCAAGATCCGCGCGGGCTTGGC
GACAACCGAATTCATGCTCGTGGATTCACCGGGAATGATCGACAGCCCAC
ATGCCTCCGCAAGCCAGCCGAGCCCCTCCTCGCTCATCAGCGCCTCAGAC
AAGGGAGATAATACGCGTTCTGCCAGAAATCACTTGGATCGCGGCTACGA
CTTTCAAGGCGTCTGCAGGTGGTTCGCTGACCGCGCCGACGTGATTCTTC
TCTTTTTCGACCCTGATAAACCGGGGACTACAGGGGAAACGCTGTCCATC
CTGACCCAGTCTTTGGCGGGTATGGACCACAAGCTCTACATCGTACTGAA
TAAAGCTGATCAATTTAGAAAAATCCACGACTTTGCTCGAGCTTATGGCT
CCTTGTGCTGGAATCTGTCCAAGGTCATTCCTCGAAAAGATTTGCCCCGC
ATCTATACCATGTGCCTGCCAGCAGCGTATCAGCGACAGCAAACTTCCCG
TTCATCAAGACCCGCGGCCTTGGGTATTGAATCAGAGATAGAGGGCCCGT
CGTCGGGGCTAGGACTGGCAGACCTGGAGAGGAGTCGGGAGGAAGTTGTG
GGCGAGGTGCTGAAGGCCCCTAAGCGCCGCATCGACAACGTGATCACTCG
TCTCGCTGATTCCGTCCATCTTGTGCAAATGCACGCTTTAGTCCTGGAAG
CTCTCCGCAACGACTTTGCTCGTGAGCTTTGGAGATTTCGAGCGGGCGCT
GCGAGTCTATGCCTAGCTGGCATGGGAGCTGTTGGGGGGGGTATGTACTT
GGGAGTGGCGTTCCAGACCATATTGGCTTTTTCTGTGTTGTATGCGCTCG
GGGCCGGAGGCTTTGTTTACGCCAATGAAAAGATGCTGAAAGAGCATGCA
GCCGTTCTGGCCAGCCCCGAGGGCCTGAGACTGATTTTTGAGCGCCTGTA
TGCGCGGCCCGTGATGGAGGGCGACGAGTTTGTGAACTCCTTGTGGAAGC
GCACGTTTCCGTCTCTGCAGATCATGCTGAACACGCAAGTTGGGCGGGAC
TTAGGAAAGCTTCCCAAGGTAAGCAAAGCGGAGCTCCAAGAGATTCAGTG
CATACTCGAGGAGGAAGTTCCCGCGCTCCGGCGTCTCGCCGCTCCTGTGT
CTTGGACCTTTAGCAAGTACACCAAAGACAGGGACGGTATGCCGGAGAGA
GGTGGCAAATTTGGTGAAATCGGCCAGGTTCGCCCGTACTGTCATGGTAG
ACAAGGGAGAAATCATGCATCGACGCATGAAAATTACCATTCGTGGGGAA
GAGCGTGCTTCCTTCCTTAGTAATGGAAAGAGAAGGAAATTAAAGTAGTC
GGGTGCACGTTTAAAGTATCTTGAAAAAAAACTTTGTGAGGCTACTGATT
ATCGATTGCGATCTAGCTAGAGCGAACGCACGCCTTTTATCAATTGGAAG
ACCTCTTACAATGTGTACATGGCAATGGAAGCCTGGACAAATTACTCCAC
ACGAGGATCATAAGAGCTTTGCCGATTACACAGGAAAGTCCCATACCACG
TTGTGAGCCCATGTTGCTCAGTCGTGACAACCCTATCTGTCATCCGTGCC
GA
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Coding sequence (CDS) from alignment at CM002461.1:589061..591312-

>rna3514 ID=rna3514|Name=rna3514|organism=Nannochloropsis gaditana|type=CDS|length=1890bp|location=Sequence derived from alignment at CM002461.1:589061..591312- (Nannochloropsis gaditana)
ATGTATTTTAAGGTTTTTTTATTATTTGTAGAATCATCTTCGTGCACTTA
CGGAGTCGAAACTCACAATGTCACAGTGCTAAAGAAGATGCTGGTGCATT
GCCATCTCGCCGGTCGACAGAGATTGCTCCTGCGGTCCGGCTCCCCCAAG
CCCTCTCTGTTGACATTGCTCCGTTTTGTTCGCCGTCTCCCATTAGAGCG
CAGTCTCAGCACTGATGACGGCAACACTACTCACAGCGGTACTATAAAAT
TGGACAGTCAGCGCCGCGTCTTGCAGCGTTGTGACGAGTTGCAAAGCTAT
CTTCAGCCCATCAATGACCGTTTGCGAGGGCCTCTGGAAAAATGTAGCGA
CAAGGCACCTTTGCTTCCGTTCGTATTTTTGCTGGGCAATCATAGTAGTG
GCAAGAGTTCTTTCGTCAATTATGTGTGTAATAGGCCCATCCAGACAGCA
GGTGTCGCACCGACAGATGACAGCTTCACCATCATCGCTCCCGGACCCAC
GGATATCGATCAGGACGGCCCTTCGACCATCGGCGACCCCGACATGGGCT
TTGCAGGCCTTCGCCACTTTGGGCCCGACCTGATCCATCACACTCAGCTC
AAGATCCGCGCGGGCTTGGCGACAACCGAATTCATGCTCGTGGATTCACC
GGGAATGATCGACAGCCCACATGCCTCCGCAAGCCAGCCGAGCCCCTCCT
CGCTCATCAGCGCCTCAGACAAGGGAGATAATACGCGTTCTGCCAGAAAT
CACTTGGATCGCGGCTACGACTTTCAAGGCGTCTGCAGGTGGTTCGCTGA
CCGCGCCGACGTGATTCTTCTCTTTTTCGACCCTGATAAACCGGGGACTA
CAGGGGAAACGCTGTCCATCCTGACCCAGTCTTTGGCGGGTATGGACCAC
AAGCTCTACATCGTACTGAATAAAGCTGATCAATTTAGAAAAATCCACGA
CTTTGCTCGAGCTTATGGCTCCTTGTGCTGGAATCTGTCCAAGGTCATTC
CTCGAAAAGATTTGCCCCGCATCTATACCATGTGCCTGCCAGCAGCGTAT
CAGCGACAGCAAACTTCCCGTTCATCAAGACCCGCGGCCTTGGGTATTGA
ATCAGAGATAGAGGGCCCGTCGTCGGGGCTAGGACTGGCAGACCTGGAGA
GGAGTCGGGAGGAAGTTGTGGGCGAGGTGCTGAAGGCCCCTAAGCGCCGC
ATCGACAACGTGATCACTCGTCTCGCTGATTCCGTCCATCTTGTGCAAAT
GCACGCTTTAGTCCTGGAAGCTCTCCGCAACGACTTTGCTCGTGAGCTTT
GGAGATTTCGAGCGGGCGCTGCGAGTCTATGCCTAGCTGGCATGGGAGCT
GTTGGGGGGGGTATGTACTTGGGAGTGGCGTTCCAGACCATATTGGCTTT
TTCTGTGTTGTATGCGCTCGGGGCCGGAGGCTTTGTTTACGCCAATGAAA
AGATGCTGAAAGAGCATGCAGCCGTTCTGGCCAGCCCCGAGGGCCTGAGA
CTGATTTTTGAGCGCCTGTATGCGCGGCCCGTGATGGAGGGCGACGAGTT
TGTGAACTCCTTGTGGAAGCGCACGTTTCCGTCTCTGCAGATCATGCTGA
ACACGCAAGTTGGGCGGGACTTAGGAAAGCTTCCCAAGGTAAGCAAAGCG
GAGCTCCAAGAGATTCAGTGCATACTCGAGGAGGAAGTTCCCGCGCTCCG
GCGTCTCGCCGCTCCTGTGTCTTGGACCTTTAGCAAGTACACCAAAGACA
GGGACGGTATGCCGGAGAGAGGTGGCAAATTTGGTGAAATCGGCCAGGTT
CGCCCGTACTGTCATGGTAGACAAGGGAGAAATCATGCATCGACGCATGA
AAATTACCATTCGTGGGGAAGAGCGTGCTTCCTTCCTTAG
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Synonyms
Publications