rna3141, rna3141 (mRNA) Nannochloropsis gaditana

Overview
Namerna3141
Unique Namerna3141
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1395
Alignment locationCM002460.1:829422..830732 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100015g16.6358.mrna
Orig protein idgnl|cribi|Naga_100015g16.6358
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:829422..830732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100015g16gene3019Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3141rna3141-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27542.1cds3133Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3141 ID=rna3141|Name=rna3141|organism=Nannochloropsis gaditana|type=mRNA|length=1395bp
ATGGACGAGTTGATGACAGGCAGCAAAAGACGACGGCATGCTTCTTCAGC
GCGACATCAGCAACTTAATCATCTAGCGGATGGGACAGAGGGAGGGGCGG
GCCCCCACCAATACAGGGGGGCTTCCGAGAACGCCTCTGTGACGTCCGAA
AGCAGCAAAGCGAAGAAGCGCTTCGTGTGGCCTGACGACTTGCACCGGGA
CTTCGTAGCCGCCATCTTCGACGTGGGCCTGAAATGTGCTTCTCCCAAGA
CGATCATGGAAATGATGAGCAACACGAAAGAGTTAACCCCGGATCACATT
AAGAGCCACTTGCAAAAGTATCGCTTGCACAGGGAGCGAGCGCGAGAGGA
ATTTTTGCAGCACTTCGGAAAGAACCCTTTCGTCGCAGGGGCAGCAGGGA
CAGGACTCGTGTGTGCGAAGGGCGAAGCGGGGGGGGTATCGAGGGACGGC
TCCGCGTCCTCCTTGGATAGCGTGAACGGCATCGGTGGAAGGGCGGAAAT
GGACCACCAGGGCGACGAAGACGCGTTCCGAGGACAATTGAACCTCATCC
GAGATTGTATACAAATGCAAGCCGGCTTCCAATCCGTTCTCCGTCAAGCC
TTGATGCAGCAGACTCAATTACAGCAGCAGCTACAGGCCCATCTACAAGC
TTTGGGTTTTGACGGACCGTCCGCCCGAATGGCCGCCGCAGCGGGAGCGC
GGGAGGCGTTGGGAAGCGCGGCGGTGCCGTCATCCCCCTCTGCAGGGCCT
CTGTCGATACCGGTGACGGCGGAAGGGAAGGCGGGCGGCAGCGACGAGGC
TCAGTACCACTATCAATACGAAGGGCACTCCCAGGGGCAGCCGCACTCGC
CTGCGCAGGCTCACGTTAACCAACAGCAGCAGGCGCAAGTGAGGCGCCCG
AACACTGGGAGCGGAGGACACATGTCGCTCCCAGGCGGTGGGAAACGGTC
GGCAGAGGAGCTGATGCAGGAGGAAATGCGCGAGCATATGGACATGCACC
GGCAGTTGGTGCTGCGAAAAAATGCGCAAATATCGCAGTACGAGGACGGG
GCAAAAATGGCGGCAGCGGCAGCGGCAGCCGTCCAAGGATTGTCGGGGGG
ACCGGTGTCTGGCGCTGGGCTACCCGCGTCGTACTTGGGCGTTTCTGGGG
GCGGTGGCAACGGTATGGCCCATCCAGGGATGACGGAAAACGTCCCTGTC
GCCCCCCACCTTCCCGCTAGCGCCAGCGTGGCCTCTTCAGGCATGGGGCT
TGCTGGTCCGACACCTGTGGCGCCGGGGGGAATGATCACGGGAGGACATC
CTGGCTTGGACCTGGAAGTAGATCTAGCCTCCTTCCGGTGGAACGAGGAC
GAGGATAACCTGTTTAGTTTTTTGATGGACCATCCCGTGGGATGA
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protein sequence of rna3141

>rna3141-protein ID=rna3141-protein|Name=rna3141|organism=Nannochloropsis gaditana|type=polypeptide|length=256bp
MTMKFLKLCTSKIKSEPSKFQALHRGLVQSFGSTKTAPLDPQIESNTWCK
QADPEMAIWAAPIIHDILELYHCRVHDPRVYNRYAPDAVFDDPAGILRGR
PAIRVAMEALPKIFRTGEPKDVHITYHAPLVGGERNGFRNGDEHKGQEQV
GPQARIALVQTYVWRQDILPLSLSPGVLLGQGNSTSVELPTVVFLTFDAK
THLITRHEDRWWGKDTTTSSPHLRPVHSIIKQLNGRAWEVWGARCYGNIR
HNEERK
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mRNA from alignment at CM002460.1:829422..830732-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3141 ID=rna3141|Name=rna3141|organism=Nannochloropsis gaditana|type=mRNA|length=1311bp|location=Sequence derived from alignment at CM002460.1:829422..830732- (Nannochloropsis gaditana)
ATGACAATGAAATTCTTGAAGTTGTGCACGAGCAAGATTAAGTCAGAACC TTCGAAATTTCAAGCTCTCCATCGGGGTCTTGTTCAATCGTTTGGAAGCA CAAAAACGGCGCCCTTAGACCCTCAAATCGAAAGTAACACCTGGTGCAAG CAAGCCGACCCGGAGATGGCCATTTGGGCCGCCCCCATAATTCATGATGT ACGTAGGACATCGATGAAGCTTCATGATGTTGATACAAATACAGGACACT TATATGGATTTCAACTTTCCTTCCATCCTCAAGATCCTAGAATTGTACCA TTGCCGCGTTCATGATCCTCGAGTCTACAACCGGTATGCTCCCGACGCTG TTTTTGACGATCCTGCCGGAATACTGCGAGGAAGACCAGCCATTCGAGTA GCCATGGAAGCATTGGTAGGACACATTTCTTCCTTAAATGTGGAAATGAC ATCGCGATTGAAGTTGTGAATCAGCGCCATCCTCTTGTTTCTTGGCTCGC CAATGATGCAATAGTCTGAAAAGAATAATTGCGATAGCCATATCTATGCG TCTCACTCGTTGAAGTAAGGCTTTCAGCGGGAGCATGGTAACCGAAAGAT ACATGTGAGAGCAGCAATACCATTTCAGGGACACTGCTCCGGATTCATAA TCCCATCAAGCAGGCGCGGAGGACTGTGTCGATGTTTACTTGTCATGCTC AGGATACTTTTAGGAGGGATGAAGCACAGACATTGTCGCACATTTATTTA AGAAACATGATTATCGCTTTCACACACGCACAATCAGCCTAAGATTTTCC GCACCGGGGAACCCAAAGACGTCCATATCACTTATCATGCTCCCTTGGTT GGAGGGGAACGCAACGGGTTTCGAAATGGCGACGAGCACAAAGGACAGGA GCAGGTAAAGAATAGGCAAGCTGACGTAACAAAAGATCTCCTGGGACAGA ATTTTTCTAAATGGTGCATGTTTCCTTCTCAACTTAGGTCGGCCCGCAGG CCCGCATTGCCCTTGTGCAAACCTACGTTTGGCGGCAAGACATTCTGCCC CTTTCATTATCTCCTGGTGTGCTTTTGGGACAGGGCAACTCGACTTCTGT CGAACTGCCGACAGTCGTTTTTCTGACTTTTGATGCCAAGACCCACCTCA TCACCCGGCATGAAGATCGATGGTGGGGAAAAGATACTACTACATCGTCC CCACACCTGCGCCCCGTGCACAGCATAATCAAACAGCTGAACGGGAGAGC TTGGGAAGTGTGGGGTGCACGGTGCTACGGTAATATCCGTCATAACGAAG AAAGAAAATAG
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Coding sequence (CDS) from alignment at CM002460.1:829422..830732-

>rna3141 ID=rna3141|Name=rna3141|organism=Nannochloropsis gaditana|type=CDS|length=3084bp|location=Sequence derived from alignment at CM002460.1:829422..830732- (Nannochloropsis gaditana)
GTCGGCCCGCAGGCCCGCATTGCCCTTGTGCAAACCTACGTTTGGCGGCA
AGACATTCTGCCCCTTTCATTATCTCCTGGTGTGCTTTTGGGACAGGGCA
ACTCGACTTCTGTCGAACTGCCGACAGTCGTTTTTCTGACTTTTGATGCC
AAGACCCACCTCATCACCCGGCATGAAGATCGATGGTGGGGAAAAGATAC
TACTACATCGTCCCCACACCTGCGCCCCGTGCACAGCATAATCAAACAGC
TGAACGGGAGAGCTTGGGAAGTGTGGGGTGCACGGTGCTACGGTAATATC
CGTCATAACGAAGAAAGAAAATAGCCTAAGATTTTCCGCACCGGGGAACC
CAAAGACGTCCATATCACTTATCATGCTCCCTTGGTTGGAGGGGAACGCA
ACGGGTTTCGAAATGGCGACGAGCACAAAGGACAGGAGCAGATCCTAGAA
TTGTACCATTGCCGCGTTCATGATCCTCGAGTCTACAACCGGTATGCTCC
CGACGCTGTTTTTGACGATCCTGCCGGAATACTGCGAGGAAGACCAGCCA
TTCGAGTAGCCATGGAAGCATTGATGACAATGAAATTCTTGAAGTTGTGC
ACGAGCAAGATTAAGTCAGAACCTTCGAAATTTCAAGCTCTCCATCGGGG
TCTTGTTCAATCGTTTGGAAGCACAAAAACGGCGCCCTTAGACCCTCAAA
TCGAAAGTAACACCTGGTGCAAGCAAGCCGACCCGGAGATGGCCATTTGG
GCCGCCCCCATAATTCATGATGTCGGCCCGCAGGCCCGCATTGCCCTTGT
GCAAACCTACGTTTGGCGGCAAGACATTCTGCCCCTTTCATTATCTCCTG
GTGTGCTTTTGGGACAGGGCAACTCGACTTCTGTCGAACTGCCGACAGTC
GTTTTTCTGACTTTTGATGCCAAGACCCACCTCATCACCCGGCATGAAGA
TCGATGGTGGGGAAAAGATACTACTACATCGTCCCCACACCTGCGCCCCG
TGCACAGCATAATCAAACAGCTGAACGGGAGAGCTTGGGAAGTGTGGGGT
GCACGGTGCTACGGTAATATCCGTCATAACGAAGAAAGAAAATAGCCTAA
GATTTTCCGCACCGGGGAACCCAAAGACGTCCATATCACTTATCATGCTC
CCTTGGTTGGAGGGGAACGCAACGGGTTTCGAAATGGCGACGAGCACAAA
GGACAGGAGCAGATCCTAGAATTGTACCATTGCCGCGTTCATGATCCTCG
AGTCTACAACCGGTATGCTCCCGACGCTGTTTTTGACGATCCTGCCGGAA
TACTGCGAGGAAGACCAGCCATTCGAGTAGCCATGGAAGCATTGATGACA
ATGAAATTCTTGAAGTTGTGCACGAGCAAGATTAAGTCAGAACCTTCGAA
ATTTCAAGCTCTCCATCGGGGTCTTGTTCAATCGTTTGGAAGCACAAAAA
CGGCGCCCTTAGACCCTCAAATCGAAAGTAACACCTGGTGCAAGCAAGCC
GACCCGGAGATGGCCATTTGGGCCGCCCCCATAATTCATGATGTCGGCCC
GCAGGCCCGCATTGCCCTTGTGCAAACCTACGTTTGGCGGCAAGACATTC
TGCCCCTTTCATTATCTCCTGGTGTGCTTTTGGGACAGGGCAACTCGACT
TCTGTCGAACTGCCGACAGTCGTTTTTCTGACTTTTGATGCCAAGACCCA
CCTCATCACCCGGCATGAAGATCGATGGTGGGGAAAAGATACTACTACAT
CGTCCCCACACCTGCGCCCCGTGCACAGCATAATCAAACAGCTGAACGGG
AGAGCTTGGGAAGTGTGGGGTGCACGGTGCTACGGTAATATCCGTCATAA
CGAAGAAAGAAAATAGCCTAAGATTTTCCGCACCGGGGAACCCAAAGACG
TCCATATCACTTATCATGCTCCCTTGGTTGGAGGGGAACGCAACGGGTTT
CGAAATGGCGACGAGCACAAAGGACAGGAGCAGATCCTAGAATTGTACCA
TTGCCGCGTTCATGATCCTCGAGTCTACAACCGGTATGCTCCCGACGCTG
TTTTTGACGATCCTGCCGGAATACTGCGAGGAAGACCAGCCATTCGAGTA
GCCATGGAAGCATTGATGACAATGAAATTCTTGAAGTTGTGCACGAGCAA
GATTAAGTCAGAACCTTCGAAATTTCAAGCTCTCCATCGGGGTCTTGTTC
AATCGTTTGGAAGCACAAAAACGGCGCCCTTAGACCCTCAAATCGAAAGT
AACACCTGGTGCAAGCAAGCCGACCCGGAGATGGCCATTTGGGCCGCCCC
CATAATTCATGATGTCGGCCCGCAGGCCCGCATTGCCCTTGTGCAAACCT
ACGTTTGGCGGCAAGACATTCTGCCCCTTTCATTATCTCCTGGTGTGCTT
TTGGGACAGGGCAACTCGACTTCTGTCGAACTGCCGACAGTCGTTTTTCT
GACTTTTGATGCCAAGACCCACCTCATCACCCGGCATGAAGATCGATGGT
GGGGAAAAGATACTACTACATCGTCCCCACACCTGCGCCCCGTGCACAGC
ATAATCAAACAGCTGAACGGGAGAGCTTGGGAAGTGTGGGGTGCACGGTG
CTACGGTAATATCCGTCATAACGAAGAAAGAAAATAGCCTAAGATTTTCC
GCACCGGGGAACCCAAAGACGTCCATATCACTTATCATGCTCCCTTGGTT
GGAGGGGAACGCAACGGGTTTCGAAATGGCGACGAGCACAAAGGACAGGA
GCAGATCCTAGAATTGTACCATTGCCGCGTTCATGATCCTCGAGTCTACA
ACCGGTATGCTCCCGACGCTGTTTTTGACGATCCTGCCGGAATACTGCGA
GGAAGACCAGCCATTCGAGTAGCCATGGAAGCATTGATGACAATGAAATT
CTTGAAGTTGTGCACGAGCAAGATTAAGTCAGAACCTTCGAAATTTCAAG
CTCTCCATCGGGGTCTTGTTCAATCGTTTGGAAGCACAAAAACGGCGCCC
TTAGACCCTCAAATCGAAAGTAACACCTGGTGCAAGCAAGCCGACCCGGA
GATGGCCATTTGGGCCGCCCCCATAATTCATGAT
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Synonyms
Publications