rna2919, rna2919 (mRNA) Nannochloropsis gaditana

Overview
Namerna2919
Unique Namerna2919
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1917
Alignment locationCM002460.1:271319..272326 -

Link to JBrowse

Properties
Property NameValue
Productudp-glucuronic acid decarboxylase 1
Orig transcript idgnl|cribi|Naga_100982g2.4689.mrna
Orig protein idgnl|cribi|Naga_100982g2.4689
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:271319..272326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100982g2gene2800Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2919rna2919-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27762.1cds2911Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2919 ID=rna2919|Name=rna2919|organism=Nannochloropsis gaditana|type=mRNA|length=1917bp
ATGACAGCAGCACGGCGGAGTGCGCTCCGTCTTAATGCTCTCCAACACTC
TTACGGGATGCCAAGACGACGACTGCCAGCCTGGGAATCTGTGCGATGCC
TTTTTGCCAGCAGCGTTGTACTATGGAGCACATTGAGCTGGAAGGGTAGC
TATGGCCGCTCAGGTGGTCGATGCTGCGCTTTTGTGCCGTCGAAAAATTT
TCCGGCAGTACTACCATTTGTCCTACGCCGAGCGCCAACGCATCTGGTTT
GGCAGGGGCCGAGCGAGCAAAACGGCTATAAAGCACCCCCTGTGCAACAT
CGCCGCCACCAGTATCTTGATAGTAGTAAAGAGACCCACGATGAGACAGG
GACAAGGGGAACGACCCGCGACGGTGATAGGACGGGCAAGCGTGCGTACG
GTGGTGGCGGCGGCTCCCACCAAAGGGGGAATGCTGGCATTGGCGGAGGG
AGGGAACGAGGGAGGAAAAGAGAGGTAGCGAGAGAGCCGGCGAAAGGGGA
GGCTAAAGGCGGGAGTGGTTCGGATCGCCAAGCCCGAGTGGTCAAGATCT
TGAGTGGAAGGGAGTACACGGCGGAGGATGTGCTGGCCCTGGTGGCTGAC
GCGGAGGTGGCCGATTTCCTCCGACTGTACCGGAGCGAGGGGCTAGTCAA
GGCCCTCTTCAAACTAGGCGCCCTCCTTTCTCGGGAGCACCGGGAGGAGA
AGCTGCGGGTGCGTCGAGATCCCCGCTTCCACGGTTTGCTCGCCCGTATA
GAGGAGCAGTCCGAGGCGCCCGCCGGCTTCAGCGCCCAGTCCTACAGCAA
GATCCTCACCGCCCTGGCCCATTTGGAGCACGTCCCTCCGCCACACTTCC
TCGACCGCCTCCGCGACGGCATGCTAGGGCGTCTTCGAGACCAGGTAGCT
CGGGGCCCTCTGCAGCCTTTTCCTTTGCCGCCGCCGAAGGGACCCTCCTC
CGACCTCCGCGGGGACGACCATTGCTTTGACCCCTACTCCCTCTCGCACA
TCATGAGCGCCTTTGTCAACCTGGACTGCTACCAGCCAGGGCTCGAGTTC
ATGGCGCTCTTCACCGAGGTGGTCGCCAACAGCCTTATGGACTTCCAGCC
CGTAGGTCTCATGAGCATCATTCGAGGCTTCGCCAAGCTCGGGCACGACC
CCGGCAAGCCCTTTCTCAAAGTCTTCACCGCCTGCGCCATGCGGAAGCTC
CACAATTTCCCCCCCCGCGCCCTCTCGAGCACCATCCAGGGGCTGGCCAC
GCTGCGGCACCAGCCCCCCCCCGAGTTCATGGCCCTTCTCGTCCGGGAGA
TGGACCGGCAGCTCGACGACTTCTCCTGGCTCGATATCCCCAACGCCATC
ACCGCCCTCTCCAAGCTCCTGTACCTGCCCCCCGAGCCCTTCCTTCGTCG
CGTGGTGGCCAAGGCCAAGGAGAAGCTGTCCGCCTTCAACCCTCAGGCCC
TCTGTAACTTCATTTTCGGCCTCTTCAAGCTCCAGCATGATCCAGGCGTC
GAGTTCATGCCCGTCTACTTCCAAGCCTGCCACCTCAAACTCGACCAGTT
CACCCCCGCAGGCTTCTCCTCCATGCTCCACTCCGTGGCGCGCCTGGGCT
ACTACCCGGGGACCTCCTTTATGGAGGACTTCGAGGCGCTCGTGGCTCCC
CGACTGGGCCGCTTTACCAAAGGCGAGCTCTGGAAACTGGCGCACGGGCT
GGCCACGCTCCACTACCGCCCGCAAGACGCTTTCTTGACGGCGTACTGGG
AGGCCCTGGCCGGGCAAGGGCGGCGGCTGACGGTGAAAGACGTGTCCCTC
GTGCTCTGGACGACGAGTTCGCTTCTCGCCGGGGGGGGGACGACCCCGCC
GTCCTCAAATACAGGCAGTTGCTGCAAGCGGCCATGTATCTCCGCACGCT
CGAGGCCCCACTGCTGA
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protein sequence of rna2919

>rna2919-protein ID=rna2919-protein|Name=rna2919|organism=Nannochloropsis gaditana|type=polypeptide|length=204bp
MMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIY
GEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKE
LVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVA
YFRSELEDTGEIVPTGPDATRPKPCCSNVLSPSREYEDHLYAETMPAADE
TRLY
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mRNA from alignment at CM002460.1:271319..272326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2919 ID=rna2919|Name=rna2919|organism=Nannochloropsis gaditana|type=mRNA|length=1008bp|location=Sequence derived from alignment at CM002460.1:271319..272326- (Nannochloropsis gaditana)
GGTGGCGGAGACGATGATGTACGCCTATCACAACCAGAGCTCCGTGGACG
TCCGGGTGGCGCGGATTTTCAACACCTTCGGCCCGCGCATGCACCCGAAC
GACGGACGCGTGGTCAGCAACTTCATCATCCAGGCCCTGCAGGGTAAGGA
CATCACTATTTACGGCGAGGGTCACCAGACCCGCTCTTTCCAGGTACGCT
CTCTCGCGGAGGGAAAAGAATGCTCTCTTGGAGGGGAAAGAATGCTCCCA
TCGCCGCGCTCACCGCCCACGTCCCTTCCCCCGCCCGCTCCCTCTGACCC
CCTCAGTATGTGGAGGACCTGGTGACGGGCTTGACGAAGCTCATGAACTC
GGACTACGGCCTCCCGGTCAATCTGGGCAATCCCGAGGAATACACCGTGA
AAGACTTCGCCCTCCTTGTCAAGGAGCTGGTTGTGGGCTCTCCCTCCGCC
ATCGTCCACATGCCCGCCACCAAGGACGACCCAGCCAAGCGAAAGCCTGA
CATCCGGGTAGCCATGGACGTTTTGGGCTGGCAGCCGCGAGTGCCTGTGC
GGGAGGGATTGAGCAAGACGGTGGCCTACTTCCGCTCTGAATTGGAAGAC
ACGGTAAGGACGGCAACGGTCAAATGGAATCTTCGAAGGGATAAGCCATT
GTTTCAGTATGTCTCAACCCCTGATTTGTTTGGGCGTCAAATGCCTAATT
CTTGACTCGTTCATGCACTAACATGGCAGGGTGAGATAGTACCCACGGGG
CCCGATGCGACACGGCCCAAGCCCTGCTGCTCGAACGTCCTGTCGCCGAG
CAGAGAGTATGAAGACCATTTGTATGCAGAAACGATGCCGGCGGCAGATG
AGACAAGGTTGTACTGAGATCGGGGGGGGGGGGCGAGTGAACAGGGAACA
GTGGACATGTAGTGTACCGGACTGATGTCTTCGTGGAAGAAGATTCCTTC
TCTGCGAGGAGTAATTCATGGAGCCTTCCGGCTCTGTATGAATATTTTTT
TATTTCTT
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Coding sequence (CDS) from alignment at CM002460.1:271319..272326-

>rna2919 ID=rna2919|Name=rna2919|organism=Nannochloropsis gaditana|type=CDS|length=1845bp|location=Sequence derived from alignment at CM002460.1:271319..272326- (Nannochloropsis gaditana)
GGTGAGATAGTACCCACGGGGCCCGATGCGACACGGCCCAAGCCCTGCTG
CTCGAACGTCCTGTCGCCGAGCAGAGAGTATGAAGACCATTTGTATGCAG
AAACGATGCCGGCGGCAGATGAGACAAGGTTGTACTGATATGTGGAGGAC
CTGGTGACGGGCTTGACGAAGCTCATGAACTCGGACTACGGCCTCCCGGT
CAATCTGGGCAATCCCGAGGAATACACCGTGAAAGACTTCGCCCTCCTTG
TCAAGGAGCTGGTTGTGGGCTCTCCCTCCGCCATCGTCCACATGCCCGCC
ACCAAGGACGACCCAGCCAAGCGAAAGCCTGACATCCGGGTAGCCATGGA
CGTTTTGGGCTGGCAGCCGCGAGTGCCTGTGCGGGAGGGATTGAGCAAGA
CGGTGGCCTACTTCCGCTCTGAATTGGAAGACACGATGATGTACGCCTAT
CACAACCAGAGCTCCGTGGACGTCCGGGTGGCGCGGATTTTCAACACCTT
CGGCCCGCGCATGCACCCGAACGACGGACGCGTGGTCAGCAACTTCATCA
TCCAGGCCCTGCAGGGTAAGGACATCACTATTTACGGCGAGGGTCACCAG
ACCCGCTCTTTCCAGGGTGAGATAGTACCCACGGGGCCCGATGCGACACG
GCCCAAGCCCTGCTGCTCGAACGTCCTGTCGCCGAGCAGAGAGTATGAAG
ACCATTTGTATGCAGAAACGATGCCGGCGGCAGATGAGACAAGGTTGTAC
TGATATGTGGAGGACCTGGTGACGGGCTTGACGAAGCTCATGAACTCGGA
CTACGGCCTCCCGGTCAATCTGGGCAATCCCGAGGAATACACCGTGAAAG
ACTTCGCCCTCCTTGTCAAGGAGCTGGTTGTGGGCTCTCCCTCCGCCATC
GTCCACATGCCCGCCACCAAGGACGACCCAGCCAAGCGAAAGCCTGACAT
CCGGGTAGCCATGGACGTTTTGGGCTGGCAGCCGCGAGTGCCTGTGCGGG
AGGGATTGAGCAAGACGGTGGCCTACTTCCGCTCTGAATTGGAAGACACG
ATGATGTACGCCTATCACAACCAGAGCTCCGTGGACGTCCGGGTGGCGCG
GATTTTCAACACCTTCGGCCCGCGCATGCACCCGAACGACGGACGCGTGG
TCAGCAACTTCATCATCCAGGCCCTGCAGGGTAAGGACATCACTATTTAC
GGCGAGGGTCACCAGACCCGCTCTTTCCAGGGTGAGATAGTACCCACGGG
GCCCGATGCGACACGGCCCAAGCCCTGCTGCTCGAACGTCCTGTCGCCGA
GCAGAGAGTATGAAGACCATTTGTATGCAGAAACGATGCCGGCGGCAGAT
GAGACAAGGTTGTACTGATATGTGGAGGACCTGGTGACGGGCTTGACGAA
GCTCATGAACTCGGACTACGGCCTCCCGGTCAATCTGGGCAATCCCGAGG
AATACACCGTGAAAGACTTCGCCCTCCTTGTCAAGGAGCTGGTTGTGGGC
TCTCCCTCCGCCATCGTCCACATGCCCGCCACCAAGGACGACCCAGCCAA
GCGAAAGCCTGACATCCGGGTAGCCATGGACGTTTTGGGCTGGCAGCCGC
GAGTGCCTGTGCGGGAGGGATTGAGCAAGACGGTGGCCTACTTCCGCTCT
GAATTGGAAGACACGATGATGTACGCCTATCACAACCAGAGCTCCGTGGA
CGTCCGGGTGGCGCGGATTTTCAACACCTTCGGCCCGCGCATGCACCCGA
ACGACGGACGCGTGGTCAGCAACTTCATCATCCAGGCCCTGCAGGGTAAG
GACATCACTATTTACGGCGAGGGTCACCAGACCCGCTCTTTCCAG
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Synonyms
Publications