rna2794, rna2794 (mRNA) Nannochloropsis gaditana

Overview
Namerna2794
Unique Namerna2794
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length842
Alignment locationCM002459.1:1234518..1235383 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100288g5.9958.mrna
Orig protein idgnl|cribi|Naga_100288g5.9958
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1234518..1235383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100288g5gene2674Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2794rna2794-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27890.1cds2786Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2794 ID=rna2794|Name=rna2794|organism=Nannochloropsis gaditana|type=mRNA|length=842bp
GCAGCTTGACCTTGAAGCCGTAGCGCCCTCAGAAGAGCGTGGGCCGGTGG
TAACAGATGAGGTATCCGCAGAGCGAGGTGTTAAATCGTCCAGCGATCTC
GCGCAAGACCGTTGGCGGGAAGCCGATGTCGAAGATAGAGACGTGCGTGA
AGGGGTCCAGCGTTCGGGTTTCCGTCACGTCGCCGTTTAGGATGAAGATT
TTGTGGTTAATGCGGTTTGCTCCCGCGACCATGCCTGGTGCTGCCCGGGA
TGCCTGCATCTGCCTCCGCGTCCACCGCTGCGGCTGCCTGGGCCTATCGT
TATTGATCTGCTCCAGCAAGCTCTTGATTGAGCTCTGGCCGATCAAGTTC
AAGCCTGGCTTGAAGAGCGGGTCCACAAGCCTCCGGGCGGGCGGTGCGGG
GAGGGGGTTGGCGCGTTTGTAGAAGTAGGCCCTGTGGCCCTCTCTGGAAC
CGTGCATTGACGTCTTGATCTGCGTGAGCAGGCTGACGTCGAATCCGTAG
CGCTCGGCGATGAGCTTGGGTCGGTGGTAGCAGATCAGGAAGGGGTAGTG
GGAGGCGTTGAACGGGCCCGCGATCTCGTAGAAGAGCGGGGGGAGTGCTA
TTATCACGTTCTACTACCTTGATATGCATGCCGGAGACGGAGCATATTAC
GCGAAGGCCATTGAAGCAAACACCGATTAATGCGGATAAGGAGCCGTTGG
ATAAGAGTGCGCGAAATTTGATCTTGGCGAGATGTGTTTCAAGGATGGTT
GTGGAGGATCTTACAGGAGACATGTACAGGGAGCTTCTACAGTATCTCGG
AAGTTCCTGCAAGAAAGAATAAGAATGAATACGACGAAAATA
back to top

protein sequence of rna2794

>rna2794-protein ID=rna2794-protein|Name=rna2794|organism=Nannochloropsis gaditana|type=polypeptide|length=255bp
MDDTGNTTSQSHTPSDPPASPSGSETALSLPSQKPKLVVLHPPTSSEPST
AAADTLQGGPMPLLKVAKTATNDVTNAAAEGGKKGEEIPKLKIASFARPL
AGSSVKPSTSTSSIPIKLTVVAPPPAGTSRPVSSVGAETAARNDASGNPP
GGREGGRGQSAAIYPLASEASMPPPGRPAKEEMRENVKAEEVEEEDDPDV
MDAEEGEGLEDAEMAQAVAGEEPVLLQEEGAVEAYAEARSEQQKQLEELK
LKARI
back to top

mRNA from alignment at CM002459.1:1234518..1235383+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2794 ID=rna2794|Name=rna2794|organism=Nannochloropsis gaditana|type=mRNA|length=866bp|location=Sequence derived from alignment at CM002459.1:1234518..1235383+ (Nannochloropsis gaditana)
ATGGATGACACTGGCAACACAACCTCACAAAGTCACACGCCTTCTGATCC ACCGGCTTCTCCATCTGGTTCAGAAACAGCGCTGTCGTTACCCTCGCAAA AGCCGAAGCTAGTGGTGCTACATCCTCCTACTTCGTCTGAACCCAGTACT GCGGCAGCAGACACATTGCAGGGCGGTCCCATGCCCTTACTGAAGGTGGC CAAGACAGCGACCAACGACGTAACCAACGCagccgcggagggagggaaga aaggagaagaaatacCTAAACTGAAAATCGCGTCgttcgcccgccccctt gcCGGATCCTCTGTCAAGCCTTCCACGTCGACATCATCCATTCCCATCAA ACTGACGGTGGTGGCACCGCCCCCCGCTGGAACATCCCGTCCCGTGTCCT CAGTTGGGGCGGAGACTGCGGCTCGTAATGACGCGTCGGGAAACCCCCCA GGAGGTCGTGAGGGCGGTCGGGGTCAAAGCGCAGCCATTTATCCACTGGC CTCGGAGGCGAGCATGCCTCCGCCGGGGAGACCtgcaaaagaagaaatgc gagagaacgtgaaggcggaggaagtggaggaggaggatgatccGGACGTG ATGGAtgcggaagagggagaaggtttGGAGGACGCAGAAATGGCGCAGGC ggtggcaggggaggagcccgtgctgctgcaggaggagggggcggtagAGG CGTATGCCGAGGCGCGCTCGGAGCAACAGAAACAGCTGGAGGAATTGAAA CTCaaggtgaggagaggggggagaggggagggagggagggagggagagag agcagTTGAGGAGGTTTGTAGGGCCGATTCCTTGTCCTGCTCCATATATG CCAGGCGCGGATCTAG
back to top

Coding sequence (CDS) from alignment at CM002459.1:1234518..1235383+

>rna2794 ID=rna2794|Name=rna2794|organism=Nannochloropsis gaditana|type=CDS|length=1536bp|location=Sequence derived from alignment at CM002459.1:1234518..1235383+ (Nannochloropsis gaditana)
ATGGATGACACTGGCAACACAACCTCACAAAGTCACACGCCTTCTGATCC
ACCGGCTTCTCCATCTGGTTCAGAAACAGCGCTGTCGTTACCCTCGCAAA
AGCCGAAGCTAGTGGTGCTACATCCTCCTACTTCGTCTGAACCCAGTACT
GCGGCAGCAGACACATTGCAGGGCGGTCCCATGCCCTTACTGAAGGTGGC
CAAGACAGCGACCAACGACGTAACCAACGCagccgcggagggagggaaga
aaggagaagaaatacCTAAACTGAAAATCGCGTCgttcgcccgccccctt
gcCGGATCCTCTGTCAAGCCTTCCACGTCGACATCATCCATTCCCATCAA
ACTGACGGTGGTGGCACCGCCCCCCGCTGGAACATCCCGTCCCGTGTCCT
CAGTTGGGGCGGAGACTGCGGCTCGTAATGACGCGTCGGGAAACCCCCCA
GGAGGTCGTGAGGGCGGTCGGGGTCAAAGCGCAGCCATTTATCCACTGGC
CTCGGAGGCGAGCATGCCTCCGCCGGGGAGACCtgcaaaagaagaaatgc
gagagaacgtgaaggcggaggaagtggaggaggaggatgatccGGACGTG
ATGGAtgcggaagagggagaaggtttGGAGGACGCAGAAATGGCGCAGGC
ggtggcaggggaggagcccgtgctgctgcaggaggagggggcggtagAGG
CGTATGCCGAGGCGCGCTCGGAGCAACAGAAACAGCTGGAGGAATTGAAA
CTCaagGCGCGGATCTAGATGGATGACACTGGCAACACAACCTCACAAAG
TCACACGCCTTCTGATCCACCGGCTTCTCCATCTGGTTCAGAAACAGCGC
TGTCGTTACCCTCGCAAAAGCCGAAGCTAGTGGTGCTACATCCTCCTACT
TCGTCTGAACCCAGTACTGCGGCAGCAGACACATTGCAGGGCGGTCCCAT
GCCCTTACTGAAGGTGGCCAAGACAGCGACCAACGACGTAACCAACGCag
ccgcggagggagggaagaaaggagaagaaatacCTAAACTGAAAATCGCG
TCgttcgcccgcccccttgcCGGATCCTCTGTCAAGCCTTCCACGTCGAC
ATCATCCATTCCCATCAAACTGACGGTGGTGGCACCGCCCCCCGCTGGAA
CATCCCGTCCCGTGTCCTCAGTTGGGGCGGAGACTGCGGCTCGTAATGAC
GCGTCGGGAAACCCCCCAGGAGGTCGTGAGGGCGGTCGGGGTCAAAGCGC
AGCCATTTATCCACTGGCCTCGGAGGCGAGCATGCCTCCGCCGGGGAGAC
Ctgcaaaagaagaaatgcgagagaacgtgaaggcggaggaagtggaggag
gaggatgatccGGACGTGATGGAtgcggaagagggagaaggtttGGAGGA
CGCAGAAATGGCGCAGGCggtggcaggggaggagcccgtgctgctgcagg
aggagggggcggtagAGGCGTATGCCGAGGCGCGCTCGGAGCAACAGAAA
CAGCTGGAGGAATTGAAACTCaagGCGCGGATCTAG
back to top
Synonyms
Publications