rna2195, rna2195 (mRNA) Nannochloropsis gaditana

Overview
Namerna2195
Unique Namerna2195
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1725
Alignment locationCM002458.1:1132571..1134594 -

Link to JBrowse

Properties
Property NameValue
Productreplication protein a 32 kda
Orig transcript idgnl|cribi|Naga_100058g23.4261.mrna
Orig protein idgnl|cribi|Naga_100058g23.4261
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1132571..1134594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100058g23gene2098Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28494.1cds2187Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2195rna2195-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2195 ID=rna2195|Name=rna2195|organism=Nannochloropsis gaditana|type=mRNA|length=1725bp
ATCGCATGCTGCATTTCTGTTGTTAAATCTCAATACCATGCACACTCTTC
TATCTTTGTGCACGCATATGCATGTCAGGGAACACTGGAAGCGTTCTGGT
CTCGGAGACAGAAGACAGCTTATTAACTTGGGAAAGCCCATATGACGGAT
ACCGACCCTACCGGCTGTCGCACAACGCGGAGCACACGTTCCTGCACATC
AGCAAGTATAGCAGAGAGGACACAAGAAGAAGATGCTGTGGATGGCATTT
TGGTGGAAAAAAGGGAGGAAACCTTTATCCATCGAGAAAAGCACGAAGTG
GAGTTTATCGACATCCCCGAGTCCCCTTCGCCTGTTGGCTCTATCCCATC
GAATACCCGTGCCAGTTTGGGTAAAGCACGGAGGAAGCTTAGCGTAGTAA
GCACAAATGCGCTTGTGGACGGCATTCATGATATTCGCTTAGACGAAACG
TTGAACGTAGACAAACAAAAAGGGAGCGTGCTACCCTGCCTCGTTAGTGC
CTACGCTGGCAAAAGCCAGAAGGGTTTTGCACCGTACCACCGCCGGAAGA
AGAACCAAGATGCCTTAATCATGGCAGAAGAGCCGCACACGTCCACTCTT
TTCTTCTGTGTACTGGATGGCCATGGCGAATTCGGAGAGCTGGTGTCAGG
CTTTTTTCAACGCGAAATGGCTCGAAATTTATTCGCCCACGACCATTTTG
AGCAAGATCCTCGTCGTGCCGTAATTGAGGTAATAGCGGCATTGGAAAGC
GCCCTGGTACAAGACCGGAGGATAGACACGGCCTTTTCGGGGACCACATT
GACGGCCGTATTATTGCGGGGGGATCGTGTATTGGTGTTCAATGTCGGAG
ATTCCCGCGTCACTGTGGCATTGCATGACGCACCCAACACCGCAGACGCT
AGCGTTAGCTCCACGAGCCGTGAAAGTTCAATGCCGATGAAAAAGGAGAC
TCTAGCCTGCACGCCCTCGAAAGCGCGCGGCCTTTCCTTCTTGTCCCGAC
GGTCTCTCTCCTTGTCCACCGCGTCCAATTTACCCTCCCCCCCCACCCCC
CCGCTGAGATCCATTCGCCTCTCCATCGACCACAAACCCGACGTGGCCGC
CGAAAAAGCCCGAATTCTTGCCGCTAATGGCCGCGTGTTCGCTGTCCGCT
ACGACGACGGGGTTGACGGACCCGCAAGAGTCTGGCTGAAGGACTTGGAC
GTGCCCGGTCTCGCCATGTCCCGATCCCTGGGCGATGTGGTCGCGCACAC
GGTGGGTGTTTCTTCCGAGCCGGAAGTGTTTGAATACACCTTGGATTCGG
CCCGGGACGTGTTTTTGGTCCTCGCGACCGACGGCTTGTGGGAGTTTATG
TCGGATGCGGAGGTGGTGAGGATGGTGGGAGTGGCCAAAGACCCGCAGGA
GGCGGTGGAAACGCTCATCAAGGAGGCAAACACCCGGTGGCTGAAGGAGG
AGCAGGTGGTGGACGACACGACGGTCTGCGTGGCCTTTCTGGGGGAGTGG
CGGAAGTAGGAGGCGCCTAGGAGCGGGGGGACCTCGAGGAGAGGGCGCAG
ATCCTTGCCACGCTCGGACGATCGTGAAACACATGGGCGTATCGATAACA
AAAAAGGGGTTAGGGTGGTAGAAATGGAGATTAAAATATTCCAAATCTGA
ATCGTAACGTCTCTCAGCCTGAAACTTATGAGGGAATAAAAACAGTCACC
GCTCTTGGAAACACACAGAATTTCC
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protein sequence of rna2195

>rna2195-protein ID=rna2195-protein|Name=rna2195|organism=Nannochloropsis gaditana|type=polypeptide|length=296bp
MSYGGFEYGAPADTYGGGGGGFMPGVGDYQGQGMGFGSPGGGGPGGGPAK
PSKEQKTLLPLTVHQVLNAGQDEPDAPTFKVDGCDLHQVKIIGQILDIVE
TAVMRAYKIDDGTGILSCHVFSEQDESEYAQERRSYCQKGAYVGVVGQVR
DYQGKRHVSVHDMRVVKDGNEITYHLLEAIWVHCQNTKGRMLKPGAAVGS
GMGLGMGMGMGGYGGVSGKMMMAGPGGMNGGTNDVHEAVLNAFMEYSMGD
NGAELATVVRALSGKLSANQIQQATEFLAQEGRLYTTLDENHYKPT
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mRNA from alignment at CM002458.1:1132571..1134594-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2195 ID=rna2195|Name=rna2195|organism=Nannochloropsis gaditana|type=mRNA|length=2024bp|location=Sequence derived from alignment at CM002458.1:1132571..1134594- (Nannochloropsis gaditana)
AAGTACAACTTGCATACGAAGGATCAAATACAATCAACAATGCATTTCGA
TACTGACCAACTCACCGGGGGGGTAAAAGCATCGTCGCCAATGAGGATAC
GTATATCCTGCGGTTCCCAGATAAAACTGGCCGGGGGAGTCTGCAGAGGA
GAGTACCACCTCACCACTTGTCGTCATGGCTAAAAATGTCTTGGATAATA
TGTTAGACTCTTAGCCACTATCGACACAGGAACAAGAATTCAGTTCGCTT
TGGCGAGGGGGGAGGTTAACAAGCCGGCTTCAAGCAATGTGAGAACAAAG
TGCAGGGCACGCACACGTGATGGAGCGAAACATACGACAACTGTGCCATG
TACGGTATCGACGACAGCGTAAAGAGGCCCTCCTGAATCTCGACTGTTTC
CGCAGACTTTCATGGACGCGAACACTTTAGTAAGCCAACAGATGCTTCAG
GGCCTTGGCGTTCTTCGCGCTCTTTTATAGCCTGTTTTCTGCATGCTTTA
CCATGACATGGGAGGCCGCAAAAAGATGTTTCCCGCCTTCCTCCGGTGTA
CCAAACAGTGCATTGCCTAACCTTTGCATGGTTGGACCGTCACTTTGTGC
TTCTGATGTCGTGATCTGCTTGCCATGTCTTCTTCATCTATCTCCCTCAA
CATTTACCCACGCGCCCTCTGCGCTTCTACCTTTCCTCCTTGCAGAGAGT
ACGGCCACGCTTTGAATCATGTCTTACGGTGGCTTCGAGTATGGTGCACC
TGCAGACACATATGGAGGCGGTGGCGGAGGTTTTATGCCGGGAGTTGGTG
ATTACCAAGGACAAGGAATGGGCTTCGGGTCGCCAGGAGGGGGTGGGCCT
GGAGGAGGGCCAGCAAAACCGAGTAAAGAGCAGAAAACTTTGCTGCCTCT
GACGGTTCATCAAGTCTTAAATGCAGGACAGGATGAGCCGGATGCCCCGA
CCTTCAAAGTGGATGGATGCGACCTGCACCAGGTCAAAATCATAGGGCAA
ATCCTGGACATTGTAGAAACCGCGGTGATGCGGGCCTATAAAATCGACGA
CGGCACGGGGATTCTGAGTTGCCATGTGTTTTCGGAACAGGACGAGAGTG
AATATGCACAAGAGCGTCGAAGTTATTGCCAAAAAGGGGCCTACGTGGGT
GTGGTTGGCCAGGTCCGGGACTACCAAGGAAAGCGCCACGTGAGTGTGCA
TGACATGCGGGTGGTGAAAGACGGCAATGAAATCACCTACCATCTGCTCG
AGGCCATCTGGGTGCACTGTCAGAACACTAAAGGGCGCATGCTCAAGCCC
GGGGCGGCCGTGGGTAGTGGGATGGGCCTGGGAATGGGGATGGGCATGGG
CGGGTATGGTGGCGTGAGTGGGAAGATGATGATGGCCGGTCCGGGAGGGA
TGAACGGAGGCACGAACGACGTGCACGAAGCCGTGCTCAATGCCTTCATG
GAGTACAGTATGGGAGACAATGGGGCAGAGCTGGCCACGGTCGTGCGGGC
TTTGTCGGGGAAACTTTCGGCGAACCAAATTCAACAGGCGACGGAATTTT
TAGCGCAGGAGGGACGGCTGTACACGACTTTGGATGAAAACCACTACAAG
CCTACATAGAAGGTGGATCAGGTTAGATTTTTGTGAGGGATTCGGTCGAA
AAGATGGCGGGGCAATGCGGGGGAGAAGAGGGGTGGGACCCGTGGGGGTG
GTGTAAGGATGCTTTGTTGGGAAGGGTGCGCGCGAGGAAGAGTAAGGTTA
GGGTTAGGGTTACCCTAAGCGGTGGGGGGAATGGAGATCGACAAAGTGGT
TGTCAGAGGGCGTTTGGCAGGAAGGTGAAAGTGACCGTGGGACGGTGCAC
ACAAGAGGGAAGGCAGGGAGGGATGGCAGGCGAGGAATCAGCACGACAAC
AATCGACATAGCCACAATCAAGCTACCTCGGAGGCAGACAGGTCGCACGA
AAGAAATTGAAATACTAGGACGTATCGCGTCAGCGATGGAAATGAAGGAT
CTTATGGAAATTCTGTGTGTTTCC
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Coding sequence (CDS) from alignment at CM002458.1:1132571..1134594-

>rna2195 ID=rna2195|Name=rna2195|organism=Nannochloropsis gaditana|type=CDS|length=891bp|location=Sequence derived from alignment at CM002458.1:1132571..1134594- (Nannochloropsis gaditana)
ATGTCTTACGGTGGCTTCGAGTATGGTGCACCTGCAGACACATATGGAGG
CGGTGGCGGAGGTTTTATGCCGGGAGTTGGTGATTACCAAGGACAAGGAA
TGGGCTTCGGGTCGCCAGGAGGGGGTGGGCCTGGAGGAGGGCCAGCAAAA
CCGAGTAAAGAGCAGAAAACTTTGCTGCCTCTGACGGTTCATCAAGTCTT
AAATGCAGGACAGGATGAGCCGGATGCCCCGACCTTCAAAGTGGATGGAT
GCGACCTGCACCAGGTCAAAATCATAGGGCAAATCCTGGACATTGTAGAA
ACCGCGGTGATGCGGGCCTATAAAATCGACGACGGCACGGGGATTCTGAG
TTGCCATGTGTTTTCGGAACAGGACGAGAGTGAATATGCACAAGAGCGTC
GAAGTTATTGCCAAAAAGGGGCCTACGTGGGTGTGGTTGGCCAGGTCCGG
GACTACCAAGGAAAGCGCCACGTGAGTGTGCATGACATGCGGGTGGTGAA
AGACGGCAATGAAATCACCTACCATCTGCTCGAGGCCATCTGGGTGCACT
GTCAGAACACTAAAGGGCGCATGCTCAAGCCCGGGGCGGCCGTGGGTAGT
GGGATGGGCCTGGGAATGGGGATGGGCATGGGCGGGTATGGTGGCGTGAG
TGGGAAGATGATGATGGCCGGTCCGGGAGGGATGAACGGAGGCACGAACG
ACGTGCACGAAGCCGTGCTCAATGCCTTCATGGAGTACAGTATGGGAGAC
AATGGGGCAGAGCTGGCCACGGTCGTGCGGGCTTTGTCGGGGAAACTTTC
GGCGAACCAAATTCAACAGGCGACGGAATTTTTAGCGCAGGAGGGACGGC
TGTACACGACTTTGGATGAAAACCACTACAAGCCTACATAG
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Synonyms
Publications