rna1897, rna1897 (mRNA) Nannochloropsis gaditana

Overview
Namerna1897
Unique Namerna1897
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1659
Alignment locationCM002458.1:420168..421125 -

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Properties
Property NameValue
Producttranscription regulator
Orig transcript idgnl|cribi|Naga_100002g124.4896.mrna
Orig protein idgnl|cribi|Naga_100002g124.4896
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:420168..421125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g124gene1813Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28777.1cds1892Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1897rna1897-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1897 ID=rna1897|Name=rna1897|organism=Nannochloropsis gaditana|type=mRNA|length=1659bp
ATGGTCATTCAGCCCTTTGTATTTCTCTCTATCGCTAGAGCAGACGAGGC
CGAATATTTAAGCGGACAGAGTCCCATCGAATTCTGTTCCTCGGATAGGG
CACTTCAAGCGCTGCGTCATTTAGCAGCCATGCCTCTCCTTCATGACAGT
AGGACGCGGCCACCGATCTGCTTAAAATTTGGATTGATTATGTGTTTTAC
TGCAATTAAGTGGCTGGGTTCGGCTTCAGGCTTCGTCGCCCCTATAAATC
CTGATTCGCATCGAGCTCGAACAAGTTGGACCGCTGCGACACGTTTGACA
CCACTCCCATCTGCTGCTTCTTCCACACTAAGAATATCCCTATTAAAATG
CGCATCAGCGACCATCGATAAAGCAACAGCCGTATCCGTGGACAACGAAG
AATCTAAAGAAGGCCCCCTTGATCTTTTCGCTTCTCAATTTGAGCAATAC
TATAACCGGGCTCTTCAAGGGAAGCCCGCTCAACTAAAAAGTCTGTTTGC
TACCGGAGCTACCTGGTCGGGCGTGCCGTTATCAGAAGGCAATGGTGATC
TTCAAGGAGTGTTTGACGCGCTGGATCAAGGACGAGCCTTCATGATTGAG
CCTTTCTTCGCGGTGACTGGGTGGGAGGCCACCGACCGAGGCATGAAGTT
GGAGTGGCAGCTCTCGGGCACCTGGCCGTTCCCCTACCGGCCCCGGGTGC
GGGCCGCAGGCACGTCGTTCATCACTCTCGACAAGGGTACGGGAAAGATG
AAGCAAGTAGAGGAGCAGTGGCACAAGCCGTGGTGGCGGGTGGTGCTCGA
ACAAGCCTCGCCCAAAGGCTGGGACCTGTGGCACCTGTACTTGACCCCCC
CGGCAGAGAAACCGCTGTATCGAGTGGTGAAAAAGCTGTCAGCCGTAGAG
ATCCGCGAATACTACCCGCGTTTGGTCATCGAGCTGGAGCAGCATGACGC
CCGGCCCGACGTACAGTACACGGAGTGGGCCTGGATCTTGCCGGACTTCG
CCTTCACGGATGAGCTGAAGCTGCAGGGGCGGGCACAATACCGAGAAACG
TACGTGGCAACTTCACCCGTGGAGAGCTGCGTGGAGAGGGTGGACTGGTC
TCCCCCATTGCCGCCGACAGGGGGCCAGCAGCCCGCCTCGAGCGTGGCGG
CTCGTCGCATCCGGCACCACGTCCCCGTCCCATCCCATCTCGGCCTTGAT
CCGCTCTCCCCCCGCCTTCCGTCGCCATCGGCTAAGGACGTGGATACCGA
GGCTGGGCAGGCGGGAAGGTACGTGCGGCAGCCCAGGAGATTCATGGCTG
TGCGGGCATTTAAGGGGCTGACGCAAACACAGGAGTATGGGGCCTCGCGA
CGTTTGTTGTTGGAGTGGTGTGGCAAGGAGGGTTTGCGGACGGTCAAGAA
CGAGAAGGGGAAATCAAGGGTGTGGGTGCAGCAGCATGGCATGAAGGCAG
GGTTCAATATGCAGGGTAACTTCTGTCTCGGCATCTACGAGCAGGCGTCG
TACTCGGACTGGGGGGAGATCGCCGTGGAGGTGGAGAGGGATCCGAGTTG
GGATAGTCAGGAAAAGGGTAATAGAGGCAGCCACAAACCATGTACGATAA
GGACCGAAAAGGTTAGGAAAGTCAACATGATAGAAGGCATCCCGTGTCGG
CCCCCTTAA
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protein sequence of rna1897

>rna1897-protein ID=rna1897-protein|Name=rna1897|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MQHRHNALYLTILLAFLAASSCHGFIRSFGPCSPTVNAIYPATRAIRPLL
ASAEGSMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVS
AAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEESM
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mRNA from alignment at CM002458.1:420168..421125-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1897 ID=rna1897|Name=rna1897|organism=Nannochloropsis gaditana|type=mRNA|length=958bp|location=Sequence derived from alignment at CM002458.1:420168..421125- (Nannochloropsis gaditana)
TCGAAAGGGAGGGACGGCGGGCCATCAAAACCGTTGAATCCTGACACATG GCCTTCGCTTCCGCGACCTGCGTCCCGCAGCACCTCGCCGACTGCCGGGG CCCTTGCCAGCACCTCCAAGCTATCTCCGTGCCCCTTGCGCTTTTAACCT GATCTTAAGCCCTTCTTCTTGACTTTTTAGAAATGTTTTCTCACAGTTCA GATTTTTTCCGCTTCCTGGAAGCGTCATAAACAGCCGTCACTCCATCTCT TTGACCCCGCAAGCCCCATCCAAGATACAATTTCTCACAACCAACATCAT GCAACACCGCCACAACGCCCTCTACTTGACCATTCTTCTGGCATTTTTGG CTGCTAGCTCGTGTCACGGGTTCATACGCTCCTTTGGGCCATGTTCACCG ACTGTTAATGCGATTTATCCTGCGACAAGGGCGATACGCCCCTTGCTAGC ATCTGCTGAGGGCAGCATGGCAGGAGATGTTGGGGCTGTCGAATCATGCA GACTTAAAATTGAGGCCGCGTTACAACCCGTCGAGTTAATTGTCAAGTCT TCCAATGACGATCCTAACGGTAGCCACATTGCTTTGCGTGTGGTGTCGGC GGCGTTCGAGGGCAAGAACAGAGTACAGCGACAGCAAATTGTCTACAAAG CCATTTGGGAAGAACTTTCAGGCCCAATCCACGCGGTAGACGAGCTGGTA TGCCGGACACCTGCGGAAGAAAGCATGTAAACGGCCTGATAAATGTATCT TGGGTTCCAGTCGGGTGTTGGCAGAGGCCTGGTGGAGGACTCTTGTGCTG ACGCTCGACCGGACGTTGATTGAGTTCATAAAATGCATAGCTTAAATAGC ATGCCATGGGACAATAGATTCACTGATCAACAAGGTGTATCGTGGGGACA ACTCGATGTACTGGCTGTCTAAATCTCCTTGTGATTTATTTTAAGGGGGC CGACACGG
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Coding sequence (CDS) from alignment at CM002458.1:420168..421125-

>rna1897 ID=rna1897|Name=rna1897|organism=Nannochloropsis gaditana|type=CDS|length=432bp|location=Sequence derived from alignment at CM002458.1:420168..421125- (Nannochloropsis gaditana)
ATGCAACACCGCCACAACGCCCTCTACTTGACCATTCTTCTGGCATTTTT
GGCTGCTAGCTCGTGTCACGGGTTCATACGCTCCTTTGGGCCATGTTCAC
CGACTGTTAATGCGATTTATCCTGCGACAAGGGCGATACGCCCCTTGCTA
GCATCTGCTGAGGGCAGCATGGCAGGAGATGTTGGGGCTGTCGAATCATG
CAGACTTAAAATTGAGGCCGCGTTACAACCCGTCGAGTTAATTGTCAAGT
CTTCCAATGACGATCCTAACGGTAGCCACATTGCTTTGCGTGTGGTGTCG
GCGGCGTTCGAGGGCAAGAACAGAGTACAGCGACAGCAAATTGTCTACAA
AGCCATTTGGGAAGAACTTTCAGGCCCAATCCACGCGGTAGACGAGCTGG
TATGCCGGACACCTGCGGAAGAAAGCATGTAA
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Synonyms
Publications