rna1704, rna1704 (mRNA) Nannochloropsis gaditana

Overview
Namerna1704
Unique Namerna1704
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1765
Alignment locationCM002457.1:1292264..1294615 +

Link to JBrowse

Properties
Property NameValue
Product4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis
Orig transcript idgnl|cribi|Naga_100773g3.7445.mrna
Orig protein idgnl|cribi|Naga_100773g3.7445
GenethiJ
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1292264..1294615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
thiJgene1640Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1704rna1704-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28975.1cds1700Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1704 ID=rna1704|Name=rna1704|organism=Nannochloropsis gaditana|type=mRNA|length=1765bp
CCGTCCACAGTCTTTCACTTGAGCACGCCTCTTGCCTCCTGTGCTTATCT
CCTGCTGTACAACCTCGCCCGCTCAATTAAGTCCTCGAAATTTAGATAGA
AAAAATATAGGTGTCGAGCGCGAACCTCCCATTAAGTCAAGCTAATGTGT
CATGCTACTTTTATTCCTATCCCCTGTCAGCGCAGGCCAAAATGATATCT
GTGGGTGTCAAAGTACGCTCCGCCCAGCCCTATTTTTCACTATTTTCCAA
ACATTATTGCCGGGCTTGAATATCACAGATACTCTCCAGGCCAATCAAAT
CAAGTATTATCTATTTCACAAGTTTTATTGCTCATGCTAATGTAATCTCC
TGACACCATATTCCTCTTTTTCACGATAACAGGAGGGCATGATACGCCAA
CGGACAGGCACGCATTCGAAAAATATTTTATGGTTATCATCACGTCTACC
TGCTCATTCCTGTTGGTTATTGATCCTGTTTTCCCAGATTCTTTTCATCA
ATGCCTTCCCAACCATACCTCCTCCTCCGTCCACTCGTCTCTCCGATGCC
CTTTCATTCAGCCCCCTTCCCTCCCATGCACGGGACCCTGTCCTGCTTCA
CGACTGGTCAGATCGTCTCACTCCGTACCAGGACGCATGGGACACCCAGC
ATCGTCTCGTGGATGGCAAACTTGCCTCGCTTGCTGACAGCAGCCACGGA
AAAGCCGCCTTCGACAGCTTACTCCTCGTTCAACACCCACCCACCTACAC
ACTGGGCACAGGAAGCACCCCTTCCAATATCCTTTTCGACCCAAATGACC
CTCAGAATGCCCCCGCGGCGCTCTTCAAGACAGAGCGGGGGGGTGAAGCC
ACCTGGCATGGCCCAGGGCAACTGGTCGCCTATCCGGTCTTGGACTTGAG
ACATTACAAACAAGACCTGCACTGGTACTTGCGGGCATTGGAAGAGGTGG
TAATCCGGACGCTGGCGCCCTTAGGTGTCCGTGGAGGAAGGGAAGAAGGA
CTGACGGGTGTGTGGGTGGAGGGACGGAAGGTGGCCGCAGTGGGGGTCAA
GGTCAAGAGATGGATAACCATGCACGGCGTGGCTCTGAATATCGACCCGC
CCATGGAATATTTTCGGCACATTGTGCCCTGCGGCATTGGGGACCGGCCC
GTGGGCTCGCTCCAGGAGGCGTGGGAGCGGCAAGGGAAGACAGGAAAGCT
GCAGGTGCAGGATGTGACCCCGTTGATGGTCAAGGCTTTCGAAGAAGTCT
TTGGCGTGGCGCTAGATAGCGTCCAAGACTGAAGCGATGCGGATAAGACC
TTTCTGGGGACGAGCACGAGGCAAGTCTTGGATTACGGCAATGAGGAAAG
GAAACTTGTATATACACGTGCATCTTGCCTTTTGTGTCAATGTCAAATGT
CGTCCAGCCTAAAAAGGCGATGACTTCGCATAATATCAGGTTTAGCTGAC
GGGAAATAGGCCTGTACTTGTAAAGAAAAGAATGCTCGAAGAGTTGCCCA
TTGGATGAACTTTGACGTTTGACATATGTTCGACGAATGAGGGCCTCCGT
GTACTCCAGCTTGAAGCACATCCTGCCTGTACAACTTTTCTGATGATGAA
AAAACCTCACATGGTAAATGTAAATGTACGCCTTCGTAATGAGCGATGTG
ATATACTGTATTGATCTCACTAAGTACAATTATCCATGAGAGAAGCCATG
ACGTTTCTCTCTGCACATGCAAGCTGCATCATTTTATGAAAAGCATTTTC
CCCTCTTGTATATAT
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protein sequence of rna1704

>rna1704-protein ID=rna1704-protein|Name=rna1704|organism=Nannochloropsis gaditana|type=polypeptide|length=287bp
MCLSRSLFPCYFFPARSSSFPLRFSKTHMMTLSRLYFSTTAIAILCMYSI
ILPTSSAFLLRARPFPSPAATSTWSRCFLSSSSTPAAPKKVLVPVADGSE
EIESVTIIDVLVRAGAAVTVASVMPSASTATLPSSWQVTCSRGVKLVADK
GIDDCLGEEWDLIACPGGLPGAEHLRDSPALLTLLQRQDKAQRLVAAICA
SPAVVLHTHGFLTGKRATCFPAERFVSSLARYEDGEEGVVEDGHVVTSRG
PGTTLRFALTLVDRLCGRAKAEEVAKGLLVDYPGKGN
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mRNA from alignment at CM002457.1:1292264..1294615+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1704 ID=rna1704|Name=rna1704|organism=Nannochloropsis gaditana|type=mRNA|length=2352bp|location=Sequence derived from alignment at CM002457.1:1292264..1294615+ (Nannochloropsis gaditana)
GCTGCTGTCAGCAAGCGAGGCAAGTTTGCCATCCACGAGACGATGCTGGG TGTCCCATGCGTCCTGGTACGGAGTGAGACGATCTGACCAGTCGTGAAGC AGGACAGGGTCCCGtgcatgggagggaagggggctgAATGAAAGGGCATC GGAGAGACGAgtggacggaggaggaggtatgGTTGGGAAGGCATTGATGA AAAGAATCTGGGAAAACAGGATCAATAACCAACAGGAATGAGCAGGTAGA CGTGATGATAACCATAAAATATTTTTCGAATGCGTGCCTGTCCGTTGGCG TATCATGCCCTCCTGTTATCGTGAAAAAGAGGAATATGGTGTCAGGAGAT TACATTAGCATGAGCAATAAAACTTGTGAAATAGATAATACTTGATTTGA TTGGCCTGGAGAGTATCTGTGATATTCAAGCCCGGCAATAATGTTTGGAA AATAGTGAAAAATAGGGCTGGGCGGAGCGTACTTTGACACCCACAGATAT CATTTTGGCCTGCGCTGACAGGGGATAGGAATAAAAGTAGCATGACACAT TAGCTTGACTTAATGGGAGGTTCGCGCTCGACACCTATATTTTTTCTATC TAAATTTCGAGGACTTAATTGAGCGGGCGAGGTTGTACAGCAGGAGATAA GCACAGGAGGCAAGAGGCGTGCTCAAGTGAAAGACTGTGGACGGGACAta tttcctcttgctccctcaCTTCCATCACCCCCGCCGGCAAATTCGGTCAT ATAATTGCGCTCACACATATACCTCGAAACCCATCTATCACACGTCCGTC GCAGCAGCCGCGTGAATAGCCCCTTTGCGGAGCGTGGTATGGAAAGCGGT AAGCAGTCTCGTGCCTGAATCCTTgtgaacctcccccctcccttccagaa GCACAATGCTGTGAGCAATTCTGACTTTGCGTTACCCTCCGCGCTTGCAT GCACGTGATATGATACGGCGCTCTTGCACTGTCTTTCACACGGTGGAGCA TGTGCCTGAGTCGCTCACTATTTCCCTGTTatttctttcctgcccgCTCA TCCAGCTTCCCTCTTCGTTTTTCCAAAACCCACATGATGACGCTGTCCCG GCTCTATTTTTCCACCACGGCCATCGCCATACTTTGCATGTACTCCATta tcctccccacctcctccgctttccttctccgcgcccgtccttttccttcc cccgccgcgaCCTCCACCTGGTCCCGGTGCTTtttgtcatcctcctccac gccggcAGCGCCCAAGAAAGTGCTCGTGCCGGTGGCCGACGGCTCGGAAG AAATTGAGTCGGTGACGATCATCGACGTCCTTGTCCGGGCCGGGGCCGCC GTGACCGTGGCCTCTGTcatgccctccgcctcgactGCCACTTTGCCCAG CTCGTGGCAGGTGACGTGCTCTCGTGGCGTGAAGCTCGTGGCGGACAAGG GCATCGACGACTgcctgggggaggaatgggattTGATCGCCTGCCCAGGC GGACTGCCGGGGGCGGAACATTTGCGGGATTCCCCCGCCCTTTTGACGCT GTTGCAACGTCAAGATAAAGCCCAACGCCTTGTGGCTGCCATCTGCGCCT CGCCCGCGGTGGTTTTACACACCCATGGCTTCTTGACAGGGAAACGCGCC ACGTGTTTCCCGGCGGAACGCTTCGTGTCGAGCCTGGCTCGCtacgagga cggggaggagggcgtggtggaggacgggcatgTGGTCACGAGCCGTGGCC CGGGGACGACGCTTCGCTTCGCCTTGACCTTAGTCGATCGCTTGTGCGGA CGGGcgaaggcagaggaggtggcgaaaGGCTTGTTGGTAGACTATCCGGG AAAGGGGAACTAGGGCAAGGGGGCGAatgggggagatggacggGATGTTT CGGGgcacaggagagggagaggggtgaggcgaagagagagaggtagTGGT GCGGTTcaggaggtaggaagggtgGGGCTTCCACACGCATTCAGAAGGGA AACCGTGGGTgtcggaaggaaaaggtTTAAGGGGGTGGACGGTGAGAGGC TGGCATGCCCAggtcgacaaggaggggcagggggggaggggtgggggtaa ggaggaaaaggcaccGTGAGGTCCGTCGAGGGAGTGCACCCAAGCCAGCC GGAACGTCCCCTGTGAGAGCAAAAAGAGAtcaaggggcagagggaaagga gccgGACGTGggaccaaggaggggaagcaggagggtCAGGAATTCCACGT GTATGGCCGTGCGTGCCTGCGAACAGCTGGTAGAAAATAGAGCCAACGTG GAAAAGAAATTTTCACGCGCTTGGAAAACCCAGAGCCACAACGCGCATCT CA
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Coding sequence (CDS) from alignment at CM002457.1:1292264..1294615+

>rna1704 ID=rna1704|Name=rna1704|organism=Nannochloropsis gaditana|type=CDS|length=864bp|location=Sequence derived from alignment at CM002457.1:1292264..1294615+ (Nannochloropsis gaditana)
ATGTGCCTGAGTCGCTCACTATTTCCCTGTTatttctttcctgcccgCTC
ATCCAGCTTCCCTCTTCGTTTTTCCAAAACCCACATGATGACGCTGTCCC
GGCTCTATTTTTCCACCACGGCCATCGCCATACTTTGCATGTACTCCATt
atcctccccacctcctccgctttccttctccgcgcccgtccttttccttc
ccccgccgcgaCCTCCACCTGGTCCCGGTGCTTtttgtcatcctcctcca
cgccggcAGCGCCCAAGAAAGTGCTCGTGCCGGTGGCCGACGGCTCGGAA
GAAATTGAGTCGGTGACGATCATCGACGTCCTTGTCCGGGCCGGGGCCGC
CGTGACCGTGGCCTCTGTcatgccctccgcctcgactGCCACTTTGCCCA
GCTCGTGGCAGGTGACGTGCTCTCGTGGCGTGAAGCTCGTGGCGGACAAG
GGCATCGACGACTgcctgggggaggaatgggattTGATCGCCTGCCCAGG
CGGACTGCCGGGGGCGGAACATTTGCGGGATTCCCCCGCCCTTTTGACGC
TGTTGCAACGTCAAGATAAAGCCCAACGCCTTGTGGCTGCCATCTGCGCC
TCGCCCGCGGTGGTTTTACACACCCATGGCTTCTTGACAGGGAAACGCGC
CACGTGTTTCCCGGCGGAACGCTTCGTGTCGAGCCTGGCTCGCtacgagg
acggggaggagggcgtggtggaggacgggcatgTGGTCACGAGCCGTGGC
CCGGGGACGACGCTTCGCTTCGCCTTGACCTTAGTCGATCGCTTGTGCGG
ACGGGcgaaggcagaggaggtggcgaaaGGCTTGTTGGTAGACTATCCGG
GAAAGGGGAACTAG
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Synonyms
Publications