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Properties
Property Name | Value |
Product | 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis |
Orig transcript id | gnl|cribi|Naga_100773g3.7445.mrna |
Orig protein id | gnl|cribi|Naga_100773g3.7445 |
Gene | thiJ |
Gbkey | mRNA |
Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002457.1 | supercontig | CM002457.1:1292264..1294615 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1704 ID=rna1704|Name=rna1704|organism=Nannochloropsis gaditana|type=mRNA|length=1765bp CCGTCCACAGTCTTTCACTTGAGCACGCCTCTTGCCTCCTGTGCTTATCT CCTGCTGTACAACCTCGCCCGCTCAATTAAGTCCTCGAAATTTAGATAGA AAAAATATAGGTGTCGAGCGCGAACCTCCCATTAAGTCAAGCTAATGTGT CATGCTACTTTTATTCCTATCCCCTGTCAGCGCAGGCCAAAATGATATCT GTGGGTGTCAAAGTACGCTCCGCCCAGCCCTATTTTTCACTATTTTCCAA ACATTATTGCCGGGCTTGAATATCACAGATACTCTCCAGGCCAATCAAAT CAAGTATTATCTATTTCACAAGTTTTATTGCTCATGCTAATGTAATCTCC TGACACCATATTCCTCTTTTTCACGATAACAGGAGGGCATGATACGCCAA CGGACAGGCACGCATTCGAAAAATATTTTATGGTTATCATCACGTCTACC TGCTCATTCCTGTTGGTTATTGATCCTGTTTTCCCAGATTCTTTTCATCA ATGCCTTCCCAACCATACCTCCTCCTCCGTCCACTCGTCTCTCCGATGCC CTTTCATTCAGCCCCCTTCCCTCCCATGCACGGGACCCTGTCCTGCTTCA CGACTGGTCAGATCGTCTCACTCCGTACCAGGACGCATGGGACACCCAGC ATCGTCTCGTGGATGGCAAACTTGCCTCGCTTGCTGACAGCAGCCACGGA AAAGCCGCCTTCGACAGCTTACTCCTCGTTCAACACCCACCCACCTACAC ACTGGGCACAGGAAGCACCCCTTCCAATATCCTTTTCGACCCAAATGACC CTCAGAATGCCCCCGCGGCGCTCTTCAAGACAGAGCGGGGGGGTGAAGCC ACCTGGCATGGCCCAGGGCAACTGGTCGCCTATCCGGTCTTGGACTTGAG ACATTACAAACAAGACCTGCACTGGTACTTGCGGGCATTGGAAGAGGTGG TAATCCGGACGCTGGCGCCCTTAGGTGTCCGTGGAGGAAGGGAAGAAGGA CTGACGGGTGTGTGGGTGGAGGGACGGAAGGTGGCCGCAGTGGGGGTCAA GGTCAAGAGATGGATAACCATGCACGGCGTGGCTCTGAATATCGACCCGC CCATGGAATATTTTCGGCACATTGTGCCCTGCGGCATTGGGGACCGGCCC GTGGGCTCGCTCCAGGAGGCGTGGGAGCGGCAAGGGAAGACAGGAAAGCT GCAGGTGCAGGATGTGACCCCGTTGATGGTCAAGGCTTTCGAAGAAGTCT TTGGCGTGGCGCTAGATAGCGTCCAAGACTGAAGCGATGCGGATAAGACC TTTCTGGGGACGAGCACGAGGCAAGTCTTGGATTACGGCAATGAGGAAAG GAAACTTGTATATACACGTGCATCTTGCCTTTTGTGTCAATGTCAAATGT CGTCCAGCCTAAAAAGGCGATGACTTCGCATAATATCAGGTTTAGCTGAC GGGAAATAGGCCTGTACTTGTAAAGAAAAGAATGCTCGAAGAGTTGCCCA TTGGATGAACTTTGACGTTTGACATATGTTCGACGAATGAGGGCCTCCGT GTACTCCAGCTTGAAGCACATCCTGCCTGTACAACTTTTCTGATGATGAA AAAACCTCACATGGTAAATGTAAATGTACGCCTTCGTAATGAGCGATGTG ATATACTGTATTGATCTCACTAAGTACAATTATCCATGAGAGAAGCCATG ACGTTTCTCTCTGCACATGCAAGCTGCATCATTTTATGAAAAGCATTTTC CCCTCTTGTATATAT back to topprotein sequence of rna1704 >rna1704-protein ID=rna1704-protein|Name=rna1704|organism=Nannochloropsis gaditana|type=polypeptide|length=287bp MCLSRSLFPCYFFPARSSSFPLRFSKTHMMTLSRLYFSTTAIAILCMYSI ILPTSSAFLLRARPFPSPAATSTWSRCFLSSSSTPAAPKKVLVPVADGSE EIESVTIIDVLVRAGAAVTVASVMPSASTATLPSSWQVTCSRGVKLVADK GIDDCLGEEWDLIACPGGLPGAEHLRDSPALLTLLQRQDKAQRLVAAICA SPAVVLHTHGFLTGKRATCFPAERFVSSLARYEDGEEGVVEDGHVVTSRG PGTTLRFALTLVDRLCGRAKAEEVAKGLLVDYPGKGN back to topmRNA from alignment at CM002457.1:1292264..1294615+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1704 ID=rna1704|Name=rna1704|organism=Nannochloropsis gaditana|type=mRNA|length=2352bp|location=Sequence derived from alignment at CM002457.1:1292264..1294615+ (Nannochloropsis gaditana) GCTGCTGTCAGCAAGCGAGGCAAGTTTGCCATCCACGAGACGATGCTGGG
TGTCCCATGCGTCCTGGTACGGAGTGAGACGATCTGACCAGTCGTGAAGC
AGGACAGGGTCCCGtgcatgggagggaagggggctgAATGAAAGGGCATC
GGAGAGACGAgtggacggaggaggaggtatgGTTGGGAAGGCATTGATGA
AAAGAATCTGGGAAAACAGGATCAATAACCAACAGGAATGAGCAGGTAGA
CGTGATGATAACCATAAAATATTTTTCGAATGCGTGCCTGTCCGTTGGCG
TATCATGCCCTCCTGTTATCGTGAAAAAGAGGAATATGGTGTCAGGAGAT
TACATTAGCATGAGCAATAAAACTTGTGAAATAGATAATACTTGATTTGA
TTGGCCTGGAGAGTATCTGTGATATTCAAGCCCGGCAATAATGTTTGGAA
AATAGTGAAAAATAGGGCTGGGCGGAGCGTACTTTGACACCCACAGATAT
CATTTTGGCCTGCGCTGACAGGGGATAGGAATAAAAGTAGCATGACACAT
TAGCTTGACTTAATGGGAGGTTCGCGCTCGACACCTATATTTTTTCTATC
TAAATTTCGAGGACTTAATTGAGCGGGCGAGGTTGTACAGCAGGAGATAA
GCACAGGAGGCAAGAGGCGTGCTCAAGTGAAAGACTGTGGACGGGACAta
tttcctcttgctccctcaCTTCCATCACCCCCGCCGGCAAATTCGGTCAT
ATAATTGCGCTCACACATATACCTCGAAACCCATCTATCACACGTCCGTC
GCAGCAGCCGCGTGAATAGCCCCTTTGCGGAGCGTGGTATGGAAAGCGGT
AAGCAGTCTCGTGCCTGAATCCTTgtgaacctcccccctcccttccagaa
GCACAATGCTGTGAGCAATTCTGACTTTGCGTTACCCTCCGCGCTTGCAT
GCACGTGATATGATACGGCGCTCTTGCACTGTCTTTCACACGGTGGAGCA
TGTGCCTGAGTCGCTCACTATTTCCCTGTTatttctttcctgcccgCTCA
TCCAGCTTCCCTCTTCGTTTTTCCAAAACCCACATGATGACGCTGTCCCG
GCTCTATTTTTCCACCACGGCCATCGCCATACTTTGCATGTACTCCATta
tcctccccacctcctccgctttccttctccgcgcccgtccttttccttcc
cccgccgcgaCCTCCACCTGGTCCCGGTGCTTtttgtcatcctcctccac
gccggcAGCGCCCAAGAAAGTGCTCGTGCCGGTGGCCGACGGCTCGGAAG
AAATTGAGTCGGTGACGATCATCGACGTCCTTGTCCGGGCCGGGGCCGCC
GTGACCGTGGCCTCTGTcatgccctccgcctcgactGCCACTTTGCCCAG
CTCGTGGCAGGTGACGTGCTCTCGTGGCGTGAAGCTCGTGGCGGACAAGG
GCATCGACGACTgcctgggggaggaatgggattTGATCGCCTGCCCAGGC
GGACTGCCGGGGGCGGAACATTTGCGGGATTCCCCCGCCCTTTTGACGCT
GTTGCAACGTCAAGATAAAGCCCAACGCCTTGTGGCTGCCATCTGCGCCT
CGCCCGCGGTGGTTTTACACACCCATGGCTTCTTGACAGGGAAACGCGCC
ACGTGTTTCCCGGCGGAACGCTTCGTGTCGAGCCTGGCTCGCtacgagga
cggggaggagggcgtggtggaggacgggcatgTGGTCACGAGCCGTGGCC
CGGGGACGACGCTTCGCTTCGCCTTGACCTTAGTCGATCGCTTGTGCGGA
CGGGcgaaggcagaggaggtggcgaaaGGCTTGTTGGTAGACTATCCGGG
AAAGGGGAACTAGGGCAAGGGGGCGAatgggggagatggacggGATGTTT
CGGGgcacaggagagggagaggggtgaggcgaagagagagaggtagTGGT
GCGGTTcaggaggtaggaagggtgGGGCTTCCACACGCATTCAGAAGGGA
AACCGTGGGTgtcggaaggaaaaggtTTAAGGGGGTGGACGGTGAGAGGC
TGGCATGCCCAggtcgacaaggaggggcagggggggaggggtgggggtaa
ggaggaaaaggcaccGTGAGGTCCGTCGAGGGAGTGCACCCAAGCCAGCC
GGAACGTCCCCTGTGAGAGCAAAAAGAGAtcaaggggcagagggaaagga
gccgGACGTGggaccaaggaggggaagcaggagggtCAGGAATTCCACGT
GTATGGCCGTGCGTGCCTGCGAACAGCTGGTAGAAAATAGAGCCAACGTG
GAAAAGAAATTTTCACGCGCTTGGAAAACCCAGAGCCACAACGCGCATCT
CA back to topCoding sequence (CDS) from alignment at CM002457.1:1292264..1294615+ >rna1704 ID=rna1704|Name=rna1704|organism=Nannochloropsis gaditana|type=CDS|length=864bp|location=Sequence derived from alignment at CM002457.1:1292264..1294615+ (Nannochloropsis gaditana) ATGTGCCTGAGTCGCTCACTATTTCCCTGTTatttctttcctgcccgCTC ATCCAGCTTCCCTCTTCGTTTTTCCAAAACCCACATGATGACGCTGTCCC GGCTCTATTTTTCCACCACGGCCATCGCCATACTTTGCATGTACTCCATt atcctccccacctcctccgctttccttctccgcgcccgtccttttccttc ccccgccgcgaCCTCCACCTGGTCCCGGTGCTTtttgtcatcctcctcca cgccggcAGCGCCCAAGAAAGTGCTCGTGCCGGTGGCCGACGGCTCGGAA GAAATTGAGTCGGTGACGATCATCGACGTCCTTGTCCGGGCCGGGGCCGC CGTGACCGTGGCCTCTGTcatgccctccgcctcgactGCCACTTTGCCCA GCTCGTGGCAGGTGACGTGCTCTCGTGGCGTGAAGCTCGTGGCGGACAAG GGCATCGACGACTgcctgggggaggaatgggattTGATCGCCTGCCCAGG CGGACTGCCGGGGGCGGAACATTTGCGGGATTCCCCCGCCCTTTTGACGC TGTTGCAACGTCAAGATAAAGCCCAACGCCTTGTGGCTGCCATCTGCGCC TCGCCCGCGGTGGTTTTACACACCCATGGCTTCTTGACAGGGAAACGCGC CACGTGTTTCCCGGCGGAACGCTTCGTGTCGAGCCTGGCTCGCtacgagg acggggaggagggcgtggtggaggacgggcatgTGGTCACGAGCCGTGGC CCGGGGACGACGCTTCGCTTCGCCTTGACCTTAGTCGATCGCTTGTGCGG ACGGGcgaaggcagaggaggtggcgaaaGGCTTGTTGGTAGACTATCCGG GAAAGGGGAACTAG back to top
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