rna1238, rna1238 (mRNA) Nannochloropsis gaditana

Overview
Namerna1238
Unique Namerna1238
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length478
Alignment locationCM002457.1:120735..121185 -

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Properties
Property NameValue
Producthistidyl-trna synthetase
Orig transcript idgnl|cribi|Naga_103156g1.2573.mrna
Orig protein idgnl|cribi|Naga_103156g1.2573
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:120735..121185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103156g1gene1192Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1238rna1238-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29436.1cds1237Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1238 ID=rna1238|Name=rna1238|organism=Nannochloropsis gaditana|type=mRNA|length=478bp
AGGGAGGGAGGGAGGGACAAGAGCGTCTTGCTGCTACCCATGCACGCGCC
TCTTGCATTGGTCCCGTCCCTTCTCGAGGAGCCCCTGCTCCCTCTCCTTC
CTTCCCTCCCCTCGCATTGGCTTCCGGGATCCAAGCACAGGACGCACGTG
GCATTTGAGCCTTCCCAATCGGCCCGCACGCCTTGTTTGTCTCGTGTCCT
TTCATACAGCCACTCACCCTCACGCCCGTCAACCTCTCACATACATGTAT
GTATATGTTCAAACATATACACACTGACCTTTGACCTTTTCCCTCTATCC
AGCGATTTCCCTTACGTGTGTACACTAGGAGGTGGCTATAAAGAGGCGCC
CCGAGCCATTCTGGCCTGGAAGGCCGCAGGTCTACTACCCTCACTGACGG
AAACGGATTACGAGAACCTCTTCAGTGGCACGTACTGCCGGGTCTTTGGG
GTGACAGGGAGGGAGGGATAGAGGGAGG
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protein sequence of rna1238

>rna1238-protein ID=rna1238-protein|Name=rna1238|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MFSVSGTQTPCVGVSIGVERVLTIMEARSQQARAAREGGGEGGGEGGLPP
RRRRSPFVEVLVATIGANMLPHRMRLARLLWAAGIPAEYLPQENPKLKKQ
MEYAHEQGIPFLVIVGGDERKRGTVKRRRWRRS
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mRNA from alignment at CM002457.1:120735..121185-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1238 ID=rna1238|Name=rna1238|organism=Nannochloropsis gaditana|type=mRNA|length=451bp|location=Sequence derived from alignment at CM002457.1:120735..121185- (Nannochloropsis gaditana)
ATGTTCTCAGTCAGTGGCACTCAGACGCCCTGCGTGGGCGTGAGCATCGG
CGTGGAACGTGTGTTGACCATCATGGAAGCCAGGAGCCAGCAAGCCCGGG
CCGCAAGGGAGGGCGGGGGGGAGGGCGGGGGGGAGGGCGGGCTCCCTCCC
CGCCGACGCCGTTCCCCCTTTGTGGAGGTTCTGGTGGCCACCATCGGTGC
CAACATGCTGCCGCACCGGATGAGACTGGCCCGGCTGTTATGGGCCGCCG
GGATTCCCGCCGAGTACCTCCCTCAGGAGAACCCGAAGCTGAAGAAGCAG
ATGGAGTATGCTCACGAACAGGGGATCCCTTTCCTGGTGATTGTGGGGGG
CGACGAACGGAAGCGGGGCACGGTGAAGGTCAAGGACCCTCGCTTGGCCC
AGGAGGAGAGCGAGGAGGAGGTGAAAGAGGAGGAGATGGCGCAGAAGCTG
A
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Coding sequence (CDS) from alignment at CM002457.1:120735..121185-

>rna1238 ID=rna1238|Name=rna1238|organism=Nannochloropsis gaditana|type=CDS|length=804bp|location=Sequence derived from alignment at CM002457.1:120735..121185- (Nannochloropsis gaditana)
AGGAGGAGATGGCGCAGAAGCTGAATGTTCTCAGTCAGTGGCACTCAGAC
GCCCTGCGTGGGCGTGAGCATCGGCGTGGAACGTGTGTTGACCATCATGG
AAGCCAGGAGCCAGCAAGCCCGGGCCGCAAGGGAGGGCGGGGGGGAGGGC
GGGGGGGAGGGCGGGCTCCCTCCCCGCCGACGCCGTTCCCCCTTTGTGGA
GGTTCTGGTGGCCACCATCGGTGCCAACATGCTGCCGCACCGGATGAGAC
TGGCCCGGCTGTTATGGGCCGCCGGGATTCCCGCCGAGTACCTCCCTCAG
GAGAACCCGAAGCTGAAGAAGCAGATGGAGTATGCTCACGAACAGGGGAT
CCCTTTCCTGGTGATTGTGGGGGGCGACGAACGGAAGCGGGGCACGGTGA
AGAGGAGGAGATGGCGCAGAAGCTGAATGTTCTCAGTCAGTGGCACTCAG
ACGCCCTGCGTGGGCGTGAGCATCGGCGTGGAACGTGTGTTGACCATCAT
GGAAGCCAGGAGCCAGCAAGCCCGGGCCGCAAGGGAGGGCGGGGGGGAGG
GCGGGGGGGAGGGCGGGCTCCCTCCCCGCCGACGCCGTTCCCCCTTTGTG
GAGGTTCTGGTGGCCACCATCGGTGCCAACATGCTGCCGCACCGGATGAG
ACTGGCCCGGCTGTTATGGGCCGCCGGGATTCCCGCCGAGTACCTCCCTC
AGGAGAACCCGAAGCTGAAGAAGCAGATGGAGTATGCTCACGAACAGGGG
ATCCCTTTCCTGGTGATTGTGGGGGGCGACGAACGGAAGCGGGGCACGGT
GAAG
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Synonyms
Publications