rna1220, rna1220 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1220
Unique Name	rna1220
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1146
Alignment location	CM002457.1:90413..93417 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100083g17.6783.mrna
Orig protein id	gnl\|cribi\|Naga_100083g17.6783
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:90413..93417 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100083g17	gene1175	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29456.1	cds1219	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1220	rna1220-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:90413..93417-
coding sequence from alignment at CM002457.1:90413..93417-

mRNA sequence

>rna1220 ID=rna1220|Name=rna1220|organism=Nannochloropsis gaditana|type=mRNA|length=1146bp
ATGAAAGTGGTGGTTTTCTCCACAAAGGATTACGATAAGGAATCCCTGAT
TGCTGCCAATGATGATCTTGCTACTGCCGATAGACACTCTTTGACATTCC
TGGAAGCTCGTGTGGAAGAGACGACCGCTTCTTTGGCAGAAGGCTACGAC
GTGGTTTGCTGCTTTGTCAACGATGAGATTACCTCCTCAGTGATCGACAC
GTGGAAAAAATCAGGGGTAAAGCTCATAGCTTTGCGAAGCGCCGGCTGCA
ATAACGTGGACCTGGACCATGTCGTCAAATGCGGGCTGTCAGTAGTCCAC
GTGCCCGCGTACTCCCCCCAGGCGGTGGCTGAACATGCGCTGGCACTCTT
ACTGACCCTAAATCGCAAGACACACAAGGTGTACAACCGCGTCCGGGAAG
GGAATTTCTGCTTGGAAGGCGTGACGCCGGGCATCGTGCTGGCCGGGAAA
ACGGTGGGCGTCCTCGGGACTGGAAACATAGGCGAATGCTTTGTCCGGAT
CATGTTGGGCCTTGGTTGTCATGTCCTTGGATATGACGTGGTGGAGAGTC
ATTCGCTTGTTGCCCTCCAAGAAAAAGGCAAAATTGAAGGTGGGGGCAGC
TTTGAATACAGATCACTGGACGAAGTGCTTCAGGCTTCGGACGTTATCTC
GCTCCACATGCCGCTGACGCCGGACACCCAGGGTATTATCGGGCCCCGCA
ATATCAAGAAGATGAAAGAGAACGTGATTCTTATCAATACCTCTCGCGGT
GGGTTAGTGGACACCAAGGCTGTCATTACAGCCTTGAAGAAGAAGCATAT
TGGCGCTCTTGGCCTCGATACATACGAAGAGGAAGGAGATTTCTTCTATC
GAGACCTGTCCCAGGAGGTTGTATCAGATGATCAGCTCATCCGTCTCATG
ACCTTTCCGAATGTGCTCGTTACCCCCCACCAAGGCTTCTATACACGTGA
GGCTCTTCTGGCCATTGCCTCTTCCACGATTACCAGTATTTCTGAATTTA
GCAGGGAGACACAGCCGGCTAGTTCTATCATCTACAGGGGTGCTCTTCAA
ACACGAGTGAAGATGAAAATGGAAAAGGTTGCGGTCACTGTGAAAGCTGA
ATTGAAGGCTTTCAGAAGCCAGAGATCAAAGCAACAGAGGATTTGA

protein sequence of rna1220

>rna1220-protein ID=rna1220-protein|Name=rna1220|organism=Nannochloropsis gaditana|type=polypeptide|length=611bp
MSKNWNVLAKGGGLEKLKVGELKGFLKENGLSQTGEKGTLMFRIKAFLDG
EGMKIDGRNPATMKAGELKKECAKRGLSPMGYPDELLESLINYLKTHGGA
DKATNAAPGIDQKSTDKTLGKAEDNIGDDGDVASALVHRIMQLGEEEDWA
AILNLGCTGLKVSRQSPTALLRKCYHRLSLNVHPDRLGGSVPEATKAFQA
VVTAFERLSEPEREEEQGNKKGKATTKTKTLARSNENCFRSRIYCPRCRT
EWGQPIDGLPPYTYNYMMMGLKTFVCSTCLCDFGALTALHKCPHCRRSFE
YDPHDYHRQVVCGNKGCTKPFGFFLFPVSDRVEKEMRGELRAEQERRLRA
RESKLARLARSKRKREGMEKGEGEQAADDRRLQLRLFVQGLLDACPRCGE
EVACKPEDREAHKDHLRDCHDKDKIEAHREKVRKAEAHQADKEAKRAQQE
DLQSLRTWEFLGGNEGELWLLTDGQLAHLCKEKALLPKEEIDEMGMGDKK
GSGAKKTTAAALSKDEMIAKLVAQSKREGPLRLTDGTESGDIKRECGEPN
TRFSRDSLPDNLHGMSLLQLRAVCAAHAYVPQATSQAALVRELERAAAKV
EGHEETLLLED

mRNA from alignment at CM002457.1:90413..93417-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1220 ID=rna1220|Name=rna1220|organism=Nannochloropsis gaditana|type=mRNA|length=3005bp|location=Sequence derived from alignment at CM002457.1:90413..93417- (Nannochloropsis gaditana)
CGACACTCCTGTGGGCGTGCTTTCCGTGTCGCTGTCACTCCCATAGGCAT
TGGTTATTGTGTCCATGACACCTGGTTAGTTTGTCGAATGGATGTGTGAG
GTGATGCGTGAGTTTTGCAGGTGCTCTAAACGGGTTAAGACAGCATATCA
TTGAATGCGTGGCCGGACCACCGCAAGCACCAGAAAGAGTTCATTCTCCA
TCCTTATAATGCCCTCTAGCTTGAAAATCGCGCTTGAATAGGTATGTTGC
TTGAGCACGAGGCCTCAGTCAAATATCGAGGGGTGTCTGGCCATGGGGGA
GCGTTACCTTTCTTGTTCCGGGTTGGTTTGCGAGGAAATTGCTGTATTCC
GTCCCTTTTGGGTGTAATGCAGGCTGAGGTCTACGCTGTGTACCAGCGAT
ATAAACAATTCATCATCGCTAGAAATCCCTTAGATTCGTCAATGGGACAC
TTATTGGTGCGAATTTCATGACCGCTTTATATCCAGCAAGCCTGCCCCCG
CTGTGGCAGTGTAGTGGTGCTGCGCTTTCTTCTTTGCATTGAGTACTGAA
GCCAATCAATTCGAGCCGAAGTGTTTTGTAGGCATGAGCAAGAACTGGAA
TGTCTTAGCCAAAGGCGGTGGTCTGGAGAAGCTGAAGGTTGGAGAGCTGA
AAGGTTTTCTCAAGGAGAACGGCTTGTCCCAGACCGGCGAGAAAGGTACG
CTCATGTTCCGCATCAAAGCCTTTCTCGATGGAGAAGGGATGAAAATAGA
CGGCCGCAATCCAGCCACCATGAAGGCAGGCGAGCTCAAAAAAGAGTGCG
CGAAGCGAGGTTTGTCTCCTATGGGTTACCCTGACGAATTGCTAGAGTCC
TTGATCAATTACCTCAAGACACACGGGGGAGCCGATAAAGCGACAAATGC
GGCCCCCGGGATAGATCAAAAATCGACTGACAAGACACTTGGAAAGGCTG
AGGACAACATTGGTGACGATGGTGATGTGGCATCGGCCTTGGTCCACAGG
ATCATGCAACTTGGCGAGGAGGAAGACTGGGCTGCGATTCTCAATTTAGG
GTGTACCGGACTTAAAGTAAGCCGACAAAGCCCCACTGCATTGCTGCGGA
AGTGTTACCACCGCCTCTCCTTGAACGTCCACCCCGACCGACTGGGTGGC
TCAGTCCCAGAGGCGACCAAAGCCTTTCAAGCAGTGGTGACAGCTTTTGA
GCGGCTCTCCGAACCTGAACGGGAGGAAGAGCAAGGGAACAAGAAGGGGA
AAGCGACGACGAAAACCAAGACATTAGCACGGTCCAACGAGAACTGCTTC
CGAAGCCGCATCTACTGTCCACGTTGTAGGACCGAGTGGGGCCAGCCCAT
CGACGGTCTGCCTCCGTACACGTATAATTACATGATGATGGGCTTGAAAA
CCTTCGTGTGCTCCACGTGTCTCTGTGACTTTGGGGCGCTCACCGCCTTG
CATAAATGTCCACATTGCCGACGTTCCTTCGAGTACGACCCGCATGATTA
CCACCGACAGGTGGTATGTGGGAACAAAGGCTGTACGAAGCCCTTTGGGT
TCTTCCTGTTCCCTGTCTCCGACCGGGTGGAAAAGGAAATGCGTGGAGAA
TTGCGAGCCGAACAAGAAAGACGGCTCCGGGCCCGGGAAAGCAAACTAGC
CCGCTTGGCCCGCTCGAAACGGAAGCGGGAAGGGATGGAGAAGGGGGAAG
GAGAGCAAGCAGCAGATGATCGCCGGTTGCAACTCCGTTTATTCGTGCAA
GGCTTGCTCGATGCGTGCCCTCGGTGTGGGGAGGAAGTGGCATGCAAGCC
CGAGGATCGCGAGGCTCACAAAGACCATTTGCGTGACTGTCATGATAAGG
ACAAGATCGAGGCGCATCGGGAAAAGGTCCGGAAAGCGGAGGCCCACCAA
GCCGACAAGGAGGCTAAGAGAGCGCAGCAAGAGGACTTACAATCCTTGCG
GACCTGGGAGTTCTTGGGAGGAAATGAGGGTGAATTGTGGTTATTGACAG
ACGGGCAGCTTGCCCACCTGTGCAAAGAGAAAGCACTGTTGCCCAAGGAA
GAAATAGATGAAATGGGAATGGGAGATAAGAAGGGAAGTGGGGCCAAGAA
AACAACTGCGGCGGCGCTCTCCAAGGACGAAATGATTGCGAAACTCGTGG
CGCAAAGCAAGAGGGAAGGACCCCTTCGTCTTACAGATGGGACGGAATCA
GGGGATATAAAGCGGGAGTGTGGGGAGCCCAATACAAGATTCTCACGAGA
CTCACTGCCGGATAACCTGCACGGCATGTCTCTTTTGCAGCTTCGAGCGG
TGTGTGCAGCGCATGCATACGTGCCTCAGGCCACTTCGCAGGCTGCTCTT
GTCCGGGAATTGGAACGGGCGGCAGCTAAAGTGGAAGGGCATGAGGAGAC
GCTGCTTTTGGAAGACTAATTGGAAAAGTAAACAAGATAAGTGAGAAAAC
TTGCATAGGAGAGGCATGTATGAACGCAACCCAAAAAATCAATACTTTGG
CTTCGCACTTGATGTAAGAGCTCAAGAGCAAGGCCGGCCCCTTTCATAAA
TTTGTTTGTAAGGGCTGTAAGATAACTATTAGTGAAACGCGGATGTATGG
GGTAAATTGACTCCTGTGATTTCAAGAGCAGTTTGTGTTGCAATACTCTT
TTGTCTGCATGCGAAGGGGCAGTCGTGCGCCCGTTTTGCGCCGCCACATT
TTCTACACCTGTACGAGCCCCTGGAACGTCGACATCTTTTTTTCCAAGAA
TATGCTGTGCGATTCTTGTTCTTCAGGTCTGATTGCCGCCCCGAAGAGTC
TTCTTGTAGAACTGGCTCTATGTCTGTGAACGTCATCCGCTGATTGATGA
CACGAGAATTGTCATATGGCTCTTCAAAATGCGATTTTCCTTGTAAAGAC
TCTGAACTTTGAACACTGTCGCTTGTGGGGACCGATTGTATCCGGTCGAA
GTCGTTCCACAATTCTTTGACATACGTGGGACTCTCATCAACATCTGGCG
GGGTA

Coding sequence (CDS) from alignment at CM002457.1:90413..93417-

>rna1220 ID=rna1220|Name=rna1220|organism=Nannochloropsis gaditana|type=CDS|length=1836bp|location=Sequence derived from alignment at CM002457.1:90413..93417- (Nannochloropsis gaditana)
ATGAGCAAGAACTGGAATGTCTTAGCCAAAGGCGGTGGTCTGGAGAAGCT
GAAGGTTGGAGAGCTGAAAGGTTTTCTCAAGGAGAACGGCTTGTCCCAGA
CCGGCGAGAAAGGTACGCTCATGTTCCGCATCAAAGCCTTTCTCGATGGA
GAAGGGATGAAAATAGACGGCCGCAATCCAGCCACCATGAAGGCAGGCGA
GCTCAAAAAAGAGTGCGCGAAGCGAGGTTTGTCTCCTATGGGTTACCCTG
ACGAATTGCTAGAGTCCTTGATCAATTACCTCAAGACACACGGGGGAGCC
GATAAAGCGACAAATGCGGCCCCCGGGATAGATCAAAAATCGACTGACAA
GACACTTGGAAAGGCTGAGGACAACATTGGTGACGATGGTGATGTGGCAT
CGGCCTTGGTCCACAGGATCATGCAACTTGGCGAGGAGGAAGACTGGGCT
GCGATTCTCAATTTAGGGTGTACCGGACTTAAAGTAAGCCGACAAAGCCC
CACTGCATTGCTGCGGAAGTGTTACCACCGCCTCTCCTTGAACGTCCACC
CCGACCGACTGGGTGGCTCAGTCCCAGAGGCGACCAAAGCCTTTCAAGCA
GTGGTGACAGCTTTTGAGCGGCTCTCCGAACCTGAACGGGAGGAAGAGCA
AGGGAACAAGAAGGGGAAAGCGACGACGAAAACCAAGACATTAGCACGGT
CCAACGAGAACTGCTTCCGAAGCCGCATCTACTGTCCACGTTGTAGGACC
GAGTGGGGCCAGCCCATCGACGGTCTGCCTCCGTACACGTATAATTACAT
GATGATGGGCTTGAAAACCTTCGTGTGCTCCACGTGTCTCTGTGACTTTG
GGGCGCTCACCGCCTTGCATAAATGTCCACATTGCCGACGTTCCTTCGAG
TACGACCCGCATGATTACCACCGACAGGTGGTATGTGGGAACAAAGGCTG
TACGAAGCCCTTTGGGTTCTTCCTGTTCCCTGTCTCCGACCGGGTGGAAA
AGGAAATGCGTGGAGAATTGCGAGCCGAACAAGAAAGACGGCTCCGGGCC
CGGGAAAGCAAACTAGCCCGCTTGGCCCGCTCGAAACGGAAGCGGGAAGG
GATGGAGAAGGGGGAAGGAGAGCAAGCAGCAGATGATCGCCGGTTGCAAC
TCCGTTTATTCGTGCAAGGCTTGCTCGATGCGTGCCCTCGGTGTGGGGAG
GAAGTGGCATGCAAGCCCGAGGATCGCGAGGCTCACAAAGACCATTTGCG
TGACTGTCATGATAAGGACAAGATCGAGGCGCATCGGGAAAAGGTCCGGA
AAGCGGAGGCCCACCAAGCCGACAAGGAGGCTAAGAGAGCGCAGCAAGAG
GACTTACAATCCTTGCGGACCTGGGAGTTCTTGGGAGGAAATGAGGGTGA
ATTGTGGTTATTGACAGACGGGCAGCTTGCCCACCTGTGCAAAGAGAAAG
CACTGTTGCCCAAGGAAGAAATAGATGAAATGGGAATGGGAGATAAGAAG
GGAAGTGGGGCCAAGAAAACAACTGCGGCGGCGCTCTCCAAGGACGAAAT
GATTGCGAAACTCGTGGCGCAAAGCAAGAGGGAAGGACCCCTTCGTCTTA
CAGATGGGACGGAATCAGGGGATATAAAGCGGGAGTGTGGGGAGCCCAAT
ACAAGATTCTCACGAGACTCACTGCCGGATAACCTGCACGGCATGTCTCT
TTTGCAGCTTCGAGCGGTGTGTGCAGCGCATGCATACGTGCCTCAGGCCA
CTTCGCAGGCTGCTCTTGTCCGGGAATTGGAACGGGCGGCAGCTAAAGTG
GAAGGGCATGAGGAGACGCTGCTTTTGGAAGACTAA

Synonyms

Publications