jgi.p|Nanoce1779_2|605066, mRNA_9593 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605066
Unique Name	mRNA_9593
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	922
Alignment location	scaffold_31:11202..12844 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	605152
Track	FilteredModels2
ProteinId	605066

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:11202..12844 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605066	gene_9593	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605066	mRNA_9593-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9593	CDS_9593	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_31:11202..12844+
coding sequence from alignment at scaffold_31:11202..12844+

mRNA sequence

>mRNA_9593 ID=mRNA_9593|Name=jgi.p|Nanoce1779_2|605066|organism=Nannochloropsis oceanica|type=mRNA|length=922bp
ACAGGCGCCGGAAGGAAAGCAACGACACGACCGGATGACGACGGCCTCGG
TCTTGCTCCGTCGAGGGGCCATCGCCTTTCCTGCCGCCCGCAAACGTGTT
TCCTGCGCTTTAGCCTCCTCTCTCCCAGCAGCATCGGCAGCATCAGCAGC
GCACCTCCCCATCCACGCCCGCTCTTTTCCCCTCGTCCATGCTCCCTCCT
CCTCTCCATTCTCCTTTCAGCATCGATCGGTCTTCACCTATCCCGCGCCG
CGGAAGCTGACCGATATCATGAAAGTGCCTCTAGTCCGGAAGTGCGAGCC
GGTGGAGATCAAGGAAATGTGGCAGGAATACCACAAGGAGCGAAGAGATG
CGTTGGCAAGTACCATTCCCGCGCAGCAATTTAAGATCCTGAAGGACCGA
GCCAAGGCCAGCCGGGTTTTCCTCTACCCCGTATTCCGGGAGTCAGGCTA
CATGACCCTCATCTCTCAGTTCCAAGATTCATGCTTCCTCTTCACCTTCT
TAGAGGACTTCCGTAAGAATCCAAGCGGCGCGACGCCCTGGCTGTGCCTG
ACTCTGTACGACGAGTTCATGGCCGACAAGTGCCTGGGATTACTGCGAGG
CGACGTGGGTCACCACCTCACACGGGAGGAGGGAGAGTACCTCATCACAC
AGCTGGTGGAGCACTACACACACGCGGAGCTTTATAAGACCTTGTGGACC
TTCAACCACGAGCCCAAAAGTTTCTCGTTCGAGAAGTATGTCCGCGGTGT
CCGCAAGCCCGACCCGCCCAAGAAGGCTCCGTCGCCCATCATCACCTGAG
GCCGGTGACTAGGGTATCAGGGTTTGAGATGATATGGTATATATGTATAT
GTAGGACTGATGCACCTCCTTGGAAGAAGGGGTGAAGAGAAGTGAGGCTG
AAGAGGAGGAGGAGGAGGAAGA

protein sequence of jgi.p|Nanoce1779_2|605066

>mRNA_9593-protein ID=mRNA_9593-protein|Name=jgi.p|Nanoce1779_2|605066|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MTTASVLLRRGAIAFPAARKRVSCALASSLPAASAASAAHLPIHARSFPL
VHAPSSSPFSFQHRSVFTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYH
KERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSC
FLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEG
EYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKYVRGVRKPDPPKKAPS
PIIT*

mRNA from alignment at scaffold_31:11202..12844+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9593 ID=mRNA_9593|Name=jgi.p|Nanoce1779_2|605066|organism=Nannochloropsis oceanica|type=mRNA|length=1643bp|location=Sequence derived from alignment at scaffold_31:11202..12844+ (Nannochloropsis oceanica)
ACAGGCGCCGGAAGGAAAGCAACGACACGACCGGATGACGACGGCCTCGG
TCTTGCTCCGTCGAGGGGCCATCGCCTTTCCTGCCGCCCGCAAACGTGTT
TCCTGCGCTTTAGCCTCCTCTCTCCCAGCAGCATCGGCAGCATCAGCAGC
GCACCTCCCCATCCACGCCCGCTCTTTTCCCCTCGTCCATGCTCCCTCCT
CCTCTCCATTCTCCTTTCAGCATCGATCGGTCTTCACCTATCCCGCGCCG
CGGAAGCTGACCGATATCATGAAAGTGCCTCTAGTCCGGAAGTGCGAGCC
GGTGGAGATCAAGGTAAGGAGGGAGGAGGGGGGCGCGTAGGAGTGAAGGG
TGGAAGAAAGGGACGAACTTCTGAAGAGCACGAATCTATTCTCCTTCATT
CTGCCCCCTGAGTTATTCGTCCTCCGTGCTCATCGCCCTTCCGCCCTCCT
TCCTTCCCTCCTTCCCTCCCCTCCTTCCCTCCCCTCCTTCCCTTTTCATC
CACTCCGTAGGAAATGTGGCAGGAATACCACAAGGAGCGAAGAGATGCGT
TGGCAAGTACCATTCCCGCGCAGCAATTTAAGATCCTGAAGGACCGAGCC
AAGGCCAGGTGTGTGTGAATGGAGGAAGGGAGGGGGGGGGAACGGAGGCG
AAGCTTCAGGAACAACCGTCGGTTTAAATTCACGTTTTTCTGTGTCGATT
TCCCTGGGCAAGTTGCCACGAGAACGTTATCAAATGACGTTTACTCACAC
CCCCTCTGCTTTGATGTCACGTCTGCGACACTCGACCGTTCACACCACAC
GTCCCTCCCTCCCTCCCTCTCCCTCCCTCCAGCCGGGTTTTCCTCTACCC
CGTATTCCGGGAGTCAGGCTACATGACCCTCATCTCTCAGTTCCAAGATT
CATGCTTCCTCTTCACCTTCTTAGGTCATTTGAAAATAGGGAGGGAGGGA
GGATGGGAGGGCGGGAGGGGAAAGGGGGGCAGTCGTAGACTTTCCAGAGT
TCCACACAATTCTCACACTTCCCTCTCCCCTTCCCTCCTTCCCTCCCTTC
CTTCCTTAGAGGACTTCCGTAAGAATCCAAGCGGCGCGACGCCCTGGCTG
TGCCTGACTCTGTACGACGAGTTCATGGCCGACAAGTGCCTGGGATTACT
GCGAGGCGACGTGGGTCACCACCTCACACGGGAGGTAGGGAAAGAGGAAG
GGAGGGAGGGAAGGAGGGTTGCGACATGATGAGGTGTTTTAGTTGTTTAC
CTGTTTACCTGTGGTACGACGTAGGAAGTCTTTTTCTCAATCGCCCCGCC
CTCCTTCCCCCCCGCACCCCCGCCCTCCCTCCCTCCTTTCTTGCCCCAGG
AGGGAGAGTACCTCATCACACAGCTGGTGGAGCACTACACACACGCGGAG
CTTTATAAGACCTTGTGGACCTTCAACCACGAGCCCAAAAGTTTCTCGTT
CGAGAAGTATGTCCGCGGTGTCCGCAAGCCCGACCCGCCCAAGAAGGCTC
CGTCGCCCATCATCACCTGAGGCCGGTGACTAGGGTATCAGGGTTTGAGA
TGATATGGTATATATGTATATGTAGGACTGATGCACCTCCTTGGAAGAAG
GGGTGAAGAGAAGTGAGGCTGAAGAGGAGGAGGAGGAGGAAGA

Coding sequence (CDS) from alignment at scaffold_31:11202..12844+

>mRNA_9593 ID=mRNA_9593|Name=jgi.p|Nanoce1779_2|605066|organism=Nannochloropsis oceanica|type=CDS|length=3825bp|location=Sequence derived from alignment at scaffold_31:11202..12844+ (Nannochloropsis oceanica)
ATGACGACGGCCTCGGTCTTGCTCCGTCGAGGGGCCATCGCCTTTCCTGC
CGCCCGCAAACGTGTTTCCTGCGCTTTAGCCTCCTCTCTCCCAGCAGCAT
CGGCAGCATCAGCAGCGCACCTCCCCATCCACGCCCGCTCTTTTCCCCTC
GTCCATGCTCCCTCCTCCTCTCCATTCTCCTTTCAGCATCGATCGGTCTT
CACCTATCCCGCGCCGCGGAAGCTGACCGATATCATGAAAGTGCCTCTAG
TCCGGAAGTGCGAGCCGGTGGAGATCAAGGAAATGTGGCAGGAATACCAC
AAGGAGCGAAGAGATGCGTTGGCAAGTACCATTCCCGCGCAGCAATTTAA
GATCCTGAAGGACCGAGCCAAGGCCAGCCGGGTTTTCCTCTACCCCGTAT
TCCGGGAGTCAGGCTACATGACCCTCATCTCTCAGTTCCAAGATTCATGC
TTCCTCTTCACCTTCTTAGAGGACTTCCGTAAGAATCCAAGCGGCGCGAC
GCCCTGGCTGTGCCTGACTCTGTACGACGAGTTCATGGCCGACAAGTGCC
TGGGATTACTGCGAGGCGACGTGGGTCACCACCTCACACGGGAGGAGGGA
GAGTACCTCATCACACAGCTGGTGGAGCACTACACACACGCGGAGCTTTA
TAAGACCTTGTGGACCTTCAACCACGAGCCCAAAAGTTTCTCGTTCGAGA
AGTATGTCCGCGGTGTCCGCAAGCCCGACCCGCCCAAGAAGGCTCCGTCG
CCCATCATCACCTGAATGACGACGGCCTCGGTCTTGCTCCGTCGAGGGGC
CATCGCCTTTCCTGCCGCCCGCAAACGTGTTTCCTGCGCTTTAGCCTCCT
CTCTCCCAGCAGCATCGGCAGCATCAGCAGCGCACCTCCCCATCCACGCC
CGCTCTTTTCCCCTCGTCCATGCTCCCTCCTCCTCTCCATTCTCCTTTCA
GCATCGATCGGTCTTCACCTATCCCGCGCCGCGGAAGCTGACCGATATCA
TGAAAGTGCCTCTAGTCCGGAAGTGCGAGCCGGTGGAGATCAAGGAAATG
TGGCAGGAATACCACAAGGAGCGAAGAGATGCGTTGGCAAGTACCATTCC
CGCGCAGCAATTTAAGATCCTGAAGGACCGAGCCAAGGCCAGCCGGGTTT
TCCTCTACCCCGTATTCCGGGAGTCAGGCTACATGACCCTCATCTCTCAG
TTCCAAGATTCATGCTTCCTCTTCACCTTCTTAGAGGACTTCCGTAAGAA
TCCAAGCGGCGCGACGCCCTGGCTGTGCCTGACTCTGTACGACGAGTTCA
TGGCCGACAAGTGCCTGGGATTACTGCGAGGCGACGTGGGTCACCACCTC
ACACGGGAGGAGGGAGAGTACCTCATCACACAGCTGGTGGAGCACTACAC
ACACGCGGAGCTTTATAAGACCTTGTGGACCTTCAACCACGAGCCCAAAA
GTTTCTCGTTCGAGAAGTATGTCCGCGGTGTCCGCAAGCCCGACCCGCCC
AAGAAGGCTCCGTCGCCCATCATCACCTGAATGACGACGGCCTCGGTCTT
GCTCCGTCGAGGGGCCATCGCCTTTCCTGCCGCCCGCAAACGTGTTTCCT
GCGCTTTAGCCTCCTCTCTCCCAGCAGCATCGGCAGCATCAGCAGCGCAC
CTCCCCATCCACGCCCGCTCTTTTCCCCTCGTCCATGCTCCCTCCTCCTC
TCCATTCTCCTTTCAGCATCGATCGGTCTTCACCTATCCCGCGCCGCGGA
AGCTGACCGATATCATGAAAGTGCCTCTAGTCCGGAAGTGCGAGCCGGTG
GAGATCAAGGAAATGTGGCAGGAATACCACAAGGAGCGAAGAGATGCGTT
GGCAAGTACCATTCCCGCGCAGCAATTTAAGATCCTGAAGGACCGAGCCA
AGGCCAGCCGGGTTTTCCTCTACCCCGTATTCCGGGAGTCAGGCTACATG
ACCCTCATCTCTCAGTTCCAAGATTCATGCTTCCTCTTCACCTTCTTAGA
GGACTTCCGTAAGAATCCAAGCGGCGCGACGCCCTGGCTGTGCCTGACTC
TGTACGACGAGTTCATGGCCGACAAGTGCCTGGGATTACTGCGAGGCGAC
GTGGGTCACCACCTCACACGGGAGGAGGGAGAGTACCTCATCACACAGCT
GGTGGAGCACTACACACACGCGGAGCTTTATAAGACCTTGTGGACCTTCA
ACCACGAGCCCAAAAGTTTCTCGTTCGAGAAGTATGTCCGCGGTGTCCGC
AAGCCCGACCCGCCCAAGAAGGCTCCGTCGCCCATCATCACCTGAATGAC
GACGGCCTCGGTCTTGCTCCGTCGAGGGGCCATCGCCTTTCCTGCCGCCC
GCAAACGTGTTTCCTGCGCTTTAGCCTCCTCTCTCCCAGCAGCATCGGCA
GCATCAGCAGCGCACCTCCCCATCCACGCCCGCTCTTTTCCCCTCGTCCA
TGCTCCCTCCTCCTCTCCATTCTCCTTTCAGCATCGATCGGTCTTCACCT
ATCCCGCGCCGCGGAAGCTGACCGATATCATGAAAGTGCCTCTAGTCCGG
AAGTGCGAGCCGGTGGAGATCAAGGAAATGTGGCAGGAATACCACAAGGA
GCGAAGAGATGCGTTGGCAAGTACCATTCCCGCGCAGCAATTTAAGATCC
TGAAGGACCGAGCCAAGGCCAGCCGGGTTTTCCTCTACCCCGTATTCCGG
GAGTCAGGCTACATGACCCTCATCTCTCAGTTCCAAGATTCATGCTTCCT
CTTCACCTTCTTAGAGGACTTCCGTAAGAATCCAAGCGGCGCGACGCCCT
GGCTGTGCCTGACTCTGTACGACGAGTTCATGGCCGACAAGTGCCTGGGA
TTACTGCGAGGCGACGTGGGTCACCACCTCACACGGGAGGAGGGAGAGTA
CCTCATCACACAGCTGGTGGAGCACTACACACACGCGGAGCTTTATAAGA
CCTTGTGGACCTTCAACCACGAGCCCAAAAGTTTCTCGTTCGAGAAGTAT
GTCCGCGGTGTCCGCAAGCCCGACCCGCCCAAGAAGGCTCCGTCGCCCAT
CATCACCTGAATGACGACGGCCTCGGTCTTGCTCCGTCGAGGGGCCATCG
CCTTTCCTGCCGCCCGCAAACGTGTTTCCTGCGCTTTAGCCTCCTCTCTC
CCAGCAGCATCGGCAGCATCAGCAGCGCACCTCCCCATCCACGCCCGCTC
TTTTCCCCTCGTCCATGCTCCCTCCTCCTCTCCATTCTCCTTTCAGCATC
GATCGGTCTTCACCTATCCCGCGCCGCGGAAGCTGACCGATATCATGAAA
GTGCCTCTAGTCCGGAAGTGCGAGCCGGTGGAGATCAAGGAAATGTGGCA
GGAATACCACAAGGAGCGAAGAGATGCGTTGGCAAGTACCATTCCCGCGC
AGCAATTTAAGATCCTGAAGGACCGAGCCAAGGCCAGCCGGGTTTTCCTC
TACCCCGTATTCCGGGAGTCAGGCTACATGACCCTCATCTCTCAGTTCCA
AGATTCATGCTTCCTCTTCACCTTCTTAGAGGACTTCCGTAAGAATCCAA
GCGGCGCGACGCCCTGGCTGTGCCTGACTCTGTACGACGAGTTCATGGCC
GACAAGTGCCTGGGATTACTGCGAGGCGACGTGGGTCACCACCTCACACG
GGAGGAGGGAGAGTACCTCATCACACAGCTGGTGGAGCACTACACACACG
CGGAGCTTTATAAGACCTTGTGGACCTTCAACCACGAGCCCAAAAGTTTC
TCGTTCGAGAAGTATGTCCGCGGTGTCCGCAAGCCCGACCCGCCCAAGAA
GGCTCCGTCGCCCATCATCACCTGA

Synonyms

Publications