jgi.p|Nanoce1779_2|183100, mRNA_8018 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|183100
Unique NamemRNA_8018
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length663
Alignment locationscaffold_22:456344..457511 +

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Properties
Property NameValue
TranscriptId183186
TrackFilteredModels2
ProteinId183100
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:456344..457511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|183100gene_8018Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|183100mRNA_8018-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8018CDS_8018Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8018 ID=mRNA_8018|Name=jgi.p|Nanoce1779_2|183100|organism=Nannochloropsis oceanica|type=mRNA|length=663bp
GTCTCGCTGGTTAATCTAAAGCCATCACCTACCCCTCTCTCCCTCCCTCC
CTCCCTCCCCCCTCCTGTACAGGAACGACCTCACCGGGAGATTCGTCTTC
CGCCCTCGCCTCCTCCTCTTTAAGTCCCGTCGCCCTTACTGCCTTGCCAT
GGCCGTCAATTGTGTGCTACGGTTCTCCTGGTCCTTGACCATCGTCCCCG
AAGGCATCGGCCTTTTTTCCCACAAGGACGCACAGCTTCACCTCTCCTCC
TTTTTGGCCGCCGCCGAAATTGTCCGTCGGGGCCTCTGGTGTGTCCTACG
CCTCGAGCACGAGCACCTGTCCCTCTATCGTTCCTCTGTCCCTCTCTCCC
TCTCTCTTTCCTCAAGGGAAGAAGAGGAAGAGGACGAGGCTGAGGACGAA
AGGAAGGGAGGAGTTGACGGGAGGGTATTAGATGATTTGGAGGTACGTCT
TAAGTGTCTTGAGGCCCGTAAGTTTCTTTTCTGTGCCCTTCTTTTCTCCT
TCCTCCCTTCTCTATTTTCTCCTCCTTTCTCCTTTCGCTCACCTTCCTTC
CCTCCTTCCCTTCCTCCCTCCCTCCTCTAGATGGAACGCCTTCTGACGGA
CGAGGAGAAACGGCGCATCGAAGCATCTCCCCACCCTAAACACCGAGCTT
TCCAGGTAGGCAT
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protein sequence of jgi.p|Nanoce1779_2|183100

>mRNA_8018-protein ID=mRNA_8018-protein|Name=jgi.p|Nanoce1779_2|183100|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MAVNCVLRFSWSLTIVPEGIGLFSHKDAQLHLSSFLAAAEIVRRGLWCVL
RLEHEHLSLYRSSVPLSLSLSSREEEEEDEAEDERKGGVDGRVLDDLEVR
LKCLEARKFLFCALLFSFLPSLFSPPFSFRSPSFPPSLPPSLL*
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mRNA from alignment at scaffold_22:456344..457511+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8018 ID=mRNA_8018|Name=jgi.p|Nanoce1779_2|183100|organism=Nannochloropsis oceanica|type=mRNA|length=1168bp|location=Sequence derived from alignment at scaffold_22:456344..457511+ (Nannochloropsis oceanica)
GTCTCGCTGGTTAATCTAAAGCCATCACCTACCCCTCTCTCCCTCCCTCC
CTCCCTCCCCCCTCCTGTACAGGAACGACCTCACCGGGAGATTCGTCTTC
CGCCCTCGCCTCCTCCTCTTTAAGTCCCGTCGCCCTTACTGCCTTGCCAT
GGCCGTCAATTGTGTGCTACGGTAAGCCAGCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAATTTCATGCCTCTCAACCC
CTCCCTCCCTCTCTTTTTCCCCTTTCTGTCAGATTCTTCCTTCCACTCTA
CACCTCTTATCTCCCCCCTCCCTCCCTCCCTCTTTCCCTCCGTCCTCCGT
CCCTCCTTTCTCTTAGGTTCTCCTGGTCCTTGACCATCGTCCCCGAAGGC
ATCGGCCTTTTTTCCCACAAGGACGCACAGGTGCCCTCCCTCCCTCCCGC
CTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
CCTTTCTTCCCTCCCTCCCTCCCTTCCTCCTTCCTTTCTTCCCTCCCTCC
CTCCCTCTCTTCTATCAGCTTCTCGTTCCCTTTTGCCGGTGGGAAACCCT
ACGCTTTTTTCCGCACCACCACCCACCCCTCCCCCTTCCCCTCCATCCTC
CCGCATTCCATTCCCTTCCTTCTGTTTTAATTTTAGTTCCCCCCTCCCTC
TCCTTCCCTCACCATCCTTCCTTCCCTTTTTCTTCCCTAGCTTCACCTCT
CCTCCTTTTTGGCCGCCGCCGAAATTGTCCGTCGGGGCCTCTGGTGTGTC
CTACGCCTCGAGCACGAGCACCTGTCCCTCTATCGTTCCTCTGTCCCTCT
CTCCCTCTCTCTTTCCTCAAGGGAAGAAGAGGAAGAGGACGAGGCTGAGG
ACGAAAGGAAGGGAGGAGTTGACGGGAGGGTATTAGATGATTTGGAGGTA
CGTCTTAAGTGTCTTGAGGCCCGTAAGTTTCTTTTCTGTGCCCTTCTTTT
CTCCTTCCTCCCTTCTCTATTTTCTCCTCCTTTCTCCTTTCGCTCACCTT
CCTTCCCTCCTTCCCTTCCTCCCTCCCTCCTCTAGATGGAACGCCTTCTG
ACGGACGAGGAGAAACGGCGCATCGAAGCATCTCCCCACCCTAAACACCG
AGCTTTCCAGGTAGGCAT
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Coding sequence (CDS) from alignment at scaffold_22:456344..457511+

>mRNA_8018 ID=mRNA_8018|Name=jgi.p|Nanoce1779_2|183100|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_22:456344..457511+ (Nannochloropsis oceanica)
ATGGCCGTCAATTGTGTGCTACGGTTCTCCTGGTCCTTGACCATCGTCCC
CGAAGGCATCGGCCTTTTTTCCCACAAGGACGCACAGCTTCACCTCTCCT
CCTTTTTGGCCGCCGCCGAAATTGTCCGTCGGGGCCTCTGGTGTGTCCTA
CGCCTCGAGCACGAGCACCTGTCCCTCTATCGTTCCTCTGTCCCTCTCTC
CCTCTCTCTTTCCTCAAGGGAAGAAGAGGAAGAGGACGAGGCTGAGGACG
AAAGGAAGGGAGGAGTTGACGGGAGGGTATTAGATGATTTGGAGGTACGT
CTTAAGTGTCTTGAGGCCCGTAAGTTTCTTTTCTGTGCCCTTCTTTTCTC
CTTCCTCCCTTCTCTATTTTCTCCTCCTTTCTCCTTTCGCTCACCTTCCT
TCCCTCCTTCCCTTCCTCCCTCCCTCCTCTAGATGGCCGTCAATTGTGTG
CTACGGTTCTCCTGGTCCTTGACCATCGTCCCCGAAGGCATCGGCCTTTT
TTCCCACAAGGACGCACAGCTTCACCTCTCCTCCTTTTTGGCCGCCGCCG
AAATTGTCCGTCGGGGCCTCTGGTGTGTCCTACGCCTCGAGCACGAGCAC
CTGTCCCTCTATCGTTCCTCTGTCCCTCTCTCCCTCTCTCTTTCCTCAAG
GGAAGAAGAGGAAGAGGACGAGGCTGAGGACGAAAGGAAGGGAGGAGTTG
ACGGGAGGGTATTAGATGATTTGGAGGTACGTCTTAAGTGTCTTGAGGCC
CGTAAGTTTCTTTTCTGTGCCCTTCTTTTCTCCTTCCTCCCTTCTCTATT
TTCTCCTCCTTTCTCCTTTCGCTCACCTTCCTTCCCTCCTTCCCTTCCTC
CCTCCCTCCTCTAGATGGCCGTCAATTGTGTGCTACGGTTCTCCTGGTCC
TTGACCATCGTCCCCGAAGGCATCGGCCTTTTTTCCCACAAGGACGCACA
GCTTCACCTCTCCTCCTTTTTGGCCGCCGCCGAAATTGTCCGTCGGGGCC
TCTGGTGTGTCCTACGCCTCGAGCACGAGCACCTGTCCCTCTATCGTTCC
TCTGTCCCTCTCTCCCTCTCTCTTTCCTCAAGGGAAGAAGAGGAAGAGGA
CGAGGCTGAGGACGAAAGGAAGGGAGGAGTTGACGGGAGGGTATTAGATG
ATTTGGAGGTACGTCTTAAGTGTCTTGAGGCCCGTAAGTTTCTTTTCTGT
GCCCTTCTTTTCTCCTTCCTCCCTTCTCTATTTTCTCCTCCTTTCTCCTT
TCGCTCACCTTCCTTCCCTCCTTCCCTTCCTCCCTCCCTCCTCTAG
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Synonyms
Publications