jgi.p|Nanoce1779_2|600872, mRNA_8002 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600872
Unique NamemRNA_8002
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1093
Alignment locationscaffold_22:398042..399686 +

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Properties
Property NameValue
TranscriptId600958
TrackFilteredModels2
ProteinId600872
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:398042..399686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600872gene_8002Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600872mRNA_8002-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8002CDS_8002Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8002 ID=mRNA_8002|Name=jgi.p|Nanoce1779_2|600872|organism=Nannochloropsis oceanica|type=mRNA|length=1093bp
CAGCACAAAGCGGAATAAACTAGCAAATATATGAGTGCCACCAACACTAT
CACCACGGCTATCCATCTTTTGGGTGTTCTCCGCCTCTCCGACCGCACCG
TCCTCTCTTCCTACGCCCCCTCCGCCACCTCTTCCTCCTTCCCTCCCTCC
CTCCTTCGAGAGCTTGCTGCCACACACCCCACACTCAGACCCTATAAGCG
TCAAACGGAGGAAGGGCCCGATGTATCTATCCATTTCTTCCTCGATGATC
AAGGCTTATTGTATGCATGTGTCACGGATAAGAGCTACCCAAGCCGTGTG
ATATTTGCGTTACTGGAGGAGACACGCCAGGACTTCGCCTCTCGTCACAA
TGCACTTAAAGTGCCCGAAGGAGAGCGAGAACGAGGACAAGGGGTTTTCG
CCAAACAGGACAAAAAATGGCTGAAGGAGTTGGTTGGAAAGTACAAGGAG
CCGGCGACGGTGGATGAACTGTATGCTGTTTCCGAAAAGGTGGAAGTGAC
GCGTGGCATCATGCAAGAGTCTATCGCCACTCTCCTGCAGAACGACGAAA
AGCTGCAGTCCCTGGCCCAAGCCACCGAATCTCTGACGCACCAAGCGAAG
GCTTTCCAACGTCGCACGTCTGCGCTTCGCGCAAATTTACAGTGGGAGGC
CTGGCGCTTGAATTAATCAAAGCAGCTTTGACGCACCTGCAGTAGAGCGG
GAGGAGATAATGGAGAGGGGGAGGGAAGGAGCGAAGAAAGGGGGGAAAGG
CGCAGTTTTATATCCTCATCCTAGTCCTCTTTCTTTTTCCTATTCTCACG
GCGGGCGGGCGATCACCGTCCTCTTCTCCGCCCTGCTCACCCTCCCTCCC
TCTCTCCTTCCTTCCCACACAGCTGGCGCGTTGCAACCTTCCTCATCTTC
GCCCTGGTCCTGGCCGTTATTTTAACCCCCATCATCATGATCGCCCGGAA
ACACATTCACCAGATCGTACCCACGGAGGCGAACGAAGCCGCTAGCATGG
TCGGAGGGGGGGAGGGAGGGAGGGAGGGAGAGGGGGACGAGCGTCTTCTC
CGCTGGTAAAGTTGAAGCGGAGGGAAAGAAGGAGGAAGGAAGG
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protein sequence of jgi.p|Nanoce1779_2|600872

>mRNA_8002-protein ID=mRNA_8002-protein|Name=jgi.p|Nanoce1779_2|600872|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MSATNTITTAIHLLGVLRLSDRTVLSSYAPSATSSSFPPSLLRELAATHP
TLRPYKRQTEEGPDVSIHFFLDDQGLLYACVTDKSYPSRVIFALLEETRQ
DFASRHNALKVPEGERERGQGVFAKQDKKWLKELVGKYKEPATVDELYAV
SEKVEVTRGIMQESIATLLQNDEKLQSLAQATESLTHQAKAFQRRTSALR
ANLQWEAWRLN*
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mRNA from alignment at scaffold_22:398042..399686+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8002 ID=mRNA_8002|Name=jgi.p|Nanoce1779_2|600872|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp|location=Sequence derived from alignment at scaffold_22:398042..399686+ (Nannochloropsis oceanica)
CAGCACAAAGCGGAATAAACTAGCAAATATATGAGTGCCACCAACACTAT
CACCACGGCTATCCATCTTTTGGGTGTTCTCCGCCTCTCCGACCGCACCG
TCCTCTCTTCCTACGCCCCCTCCGCCACCTCTTCCTCCTTCCCTCCCTCC
CTCCTTCGAGAGCTTGCTGCCACACACCCCACACTCAGACCCTATAAGCG
TCAAACGGAGGAAGGGCCCGATGTATCTATCCATTTCTTCCTCGATGATC
AAGGCTTATTGTATGCATGTGTCACGGATAAGAGCTACCCAAGCCGTGTG
ATATTTGCGTTACTGGAGGAGACACGCCAGGACTTCGCCTCTCGTCACAA
TGCACTTAAAGTGCCCGAAGGAGAGCGAGAACGAGGACAAGGGGTTTTCG
CCAAACAGGACAAAAAATGGCTGAAGGAGTTGGTTGGAAAGTACAAGGAG
CCGGCGACGGTGGATGAACTGTATGCTGTTTCCGAAAAGGTGAAGGGAGG
GAGGGCGAGAGGGCGAGAGGGCGAGAGGGCGGGAGGGAGGGAGGGAGGAG
AGAGGGCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGC
AAAACGGACAGCTATTCCCATGAACTTTTGACAGTTCACTTATTGTAACG
GCTATGTCGTCTCTCTTTTCGTCCACCTGCATCATATCCACGCGCCTCAT
AGTGTGTTTTTCCCTCTTTCCATCCGTCCATCCACATGAATCTCCAACAG
GTGGAAGTGACGCGTGGCATCATGCAAGAGTCTATCGCCACTCTCCTGCA
GAACGACGGTGCGTTTTCTCCCTTTCTCTTTCCTTCCCTCCCTCCGTCCT
TCAGAAAAGCTGCAGTCCCAGGCCCAAGCCACCGAATCTCTGACGCACCA
AGCGAAGACTGTTCAATGTTGTCTCTCTGACCAAACCCCCCTCCCTCCCT
CCTTCCCTCCCTCCCTCCCTCCCTCCTCCGAACCCTAGAAAAGCTGCAGT
CCCTGGCCCAAGCCACCGAATCTCTGACGCACCAAGCGAAGGCTTTCCAA
CGTCGCACGTCTGCGCTTCGCGCAAATTTACAGTGGGAGGCCTGGCGGTA
AGCGACCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCCT
CCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCTC
CCTTACAGCTTGAATTAATCAAAGCAGCTTTGACGCACCTGCAGTAGAGC
GGGAGGAGATAATGGAGAGGGGGAGGGAAGGAGCGAAGAAAGGGGGGAAA
GGCGCAGTTTTATATCCTCATCCTAGTCCTCTTTCTTTTTCCTATTCTCA
CGGCGGGCGGGCGATCACCGTCCTCTTCTCCGCCCTGCTCACCCTCCCTC
CCTCTCTCCTTCCTTCCCACACAGCTGGCGCGTTGCAACCTTCCTCATCT
TCGCCCTGGTCCTGGCCGTTATTTTAACCCCCATCATCATGATCGCCCGG
AAACACATTCACCAGATCGTACCCACGGAGGCGAACGAAGCCGCTAGCAT
GGTCGGAGGGGGGGAGGGAGGGAGGGAGGGAGAGGGGGACGAGCGTCTTC
TCCGCTGGTAAAGTTGAAGCGGAGGGAAAGAAGGAGGAAGGAAGG
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Coding sequence (CDS) from alignment at scaffold_22:398042..399686+

>mRNA_8002 ID=mRNA_8002|Name=jgi.p|Nanoce1779_2|600872|organism=Nannochloropsis oceanica|type=CDS|length=2544bp|location=Sequence derived from alignment at scaffold_22:398042..399686+ (Nannochloropsis oceanica)
ATGAGTGCCACCAACACTATCACCACGGCTATCCATCTTTTGGGTGTTCT
CCGCCTCTCCGACCGCACCGTCCTCTCTTCCTACGCCCCCTCCGCCACCT
CTTCCTCCTTCCCTCCCTCCCTCCTTCGAGAGCTTGCTGCCACACACCCC
ACACTCAGACCCTATAAGCGTCAAACGGAGGAAGGGCCCGATGTATCTAT
CCATTTCTTCCTCGATGATCAAGGCTTATTGTATGCATGTGTCACGGATA
AGAGCTACCCAAGCCGTGTGATATTTGCGTTACTGGAGGAGACACGCCAG
GACTTCGCCTCTCGTCACAATGCACTTAAAGTGCCCGAAGGAGAGCGAGA
ACGAGGACAAGGGGTTTTCGCCAAACAGGACAAAAAATGGCTGAAGGAGT
TGGTTGGAAAGTACAAGGAGCCGGCGACGGTGGATGAACTGTATGCTGTT
TCCGAAAAGGTGGAAGTGACGCGTGGCATCATGCAAGAGTCTATCGCCAC
TCTCCTGCAGAACGACGAAAAGCTGCAGTCCCTGGCCCAAGCCACCGAAT
CTCTGACGCACCAAGCGAAGGCTTTCCAACGTCGCACGTCTGCGCTTCGC
GCAAATTTACAGTGGGAGGCCTGGCGCTTGAATTAAATGAGTGCCACCAA
CACTATCACCACGGCTATCCATCTTTTGGGTGTTCTCCGCCTCTCCGACC
GCACCGTCCTCTCTTCCTACGCCCCCTCCGCCACCTCTTCCTCCTTCCCT
CCCTCCCTCCTTCGAGAGCTTGCTGCCACACACCCCACACTCAGACCCTA
TAAGCGTCAAACGGAGGAAGGGCCCGATGTATCTATCCATTTCTTCCTCG
ATGATCAAGGCTTATTGTATGCATGTGTCACGGATAAGAGCTACCCAAGC
CGTGTGATATTTGCGTTACTGGAGGAGACACGCCAGGACTTCGCCTCTCG
TCACAATGCACTTAAAGTGCCCGAAGGAGAGCGAGAACGAGGACAAGGGG
TTTTCGCCAAACAGGACAAAAAATGGCTGAAGGAGTTGGTTGGAAAGTAC
AAGGAGCCGGCGACGGTGGATGAACTGTATGCTGTTTCCGAAAAGGTGGA
AGTGACGCGTGGCATCATGCAAGAGTCTATCGCCACTCTCCTGCAGAACG
ACGAAAAGCTGCAGTCCCTGGCCCAAGCCACCGAATCTCTGACGCACCAA
GCGAAGGCTTTCCAACGTCGCACGTCTGCGCTTCGCGCAAATTTACAGTG
GGAGGCCTGGCGCTTGAATTAAATGAGTGCCACCAACACTATCACCACGG
CTATCCATCTTTTGGGTGTTCTCCGCCTCTCCGACCGCACCGTCCTCTCT
TCCTACGCCCCCTCCGCCACCTCTTCCTCCTTCCCTCCCTCCCTCCTTCG
AGAGCTTGCTGCCACACACCCCACACTCAGACCCTATAAGCGTCAAACGG
AGGAAGGGCCCGATGTATCTATCCATTTCTTCCTCGATGATCAAGGCTTA
TTGTATGCATGTGTCACGGATAAGAGCTACCCAAGCCGTGTGATATTTGC
GTTACTGGAGGAGACACGCCAGGACTTCGCCTCTCGTCACAATGCACTTA
AAGTGCCCGAAGGAGAGCGAGAACGAGGACAAGGGGTTTTCGCCAAACAG
GACAAAAAATGGCTGAAGGAGTTGGTTGGAAAGTACAAGGAGCCGGCGAC
GGTGGATGAACTGTATGCTGTTTCCGAAAAGGTGGAAGTGACGCGTGGCA
TCATGCAAGAGTCTATCGCCACTCTCCTGCAGAACGACGAAAAGCTGCAG
TCCCTGGCCCAAGCCACCGAATCTCTGACGCACCAAGCGAAGGCTTTCCA
ACGTCGCACGTCTGCGCTTCGCGCAAATTTACAGTGGGAGGCCTGGCGCT
TGAATTAAATGAGTGCCACCAACACTATCACCACGGCTATCCATCTTTTG
GGTGTTCTCCGCCTCTCCGACCGCACCGTCCTCTCTTCCTACGCCCCCTC
CGCCACCTCTTCCTCCTTCCCTCCCTCCCTCCTTCGAGAGCTTGCTGCCA
CACACCCCACACTCAGACCCTATAAGCGTCAAACGGAGGAAGGGCCCGAT
GTATCTATCCATTTCTTCCTCGATGATCAAGGCTTATTGTATGCATGTGT
CACGGATAAGAGCTACCCAAGCCGTGTGATATTTGCGTTACTGGAGGAGA
CACGCCAGGACTTCGCCTCTCGTCACAATGCACTTAAAGTGCCCGAAGGA
GAGCGAGAACGAGGACAAGGGGTTTTCGCCAAACAGGACAAAAAATGGCT
GAAGGAGTTGGTTGGAAAGTACAAGGAGCCGGCGACGGTGGATGAACTGT
ATGCTGTTTCCGAAAAGGTGGAAGTGACGCGTGGCATCATGCAAGAGTCT
ATCGCCACTCTCCTGCAGAACGACGAAAAGCTGCAGTCCCTGGCCCAAGC
CACCGAATCTCTGACGCACCAAGCGAAGGCTTTCCAACGTCGCACGTCTG
CGCTTCGCGCAAATTTACAGTGGGAGGCCTGGCGCTTGAATTAA
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Synonyms
Publications