jgi.p|Nanoce1779_2|600742, mRNA_7976 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600742
Unique Name	mRNA_7976
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1499
Alignment location	scaffold_22:303414..304912 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600828
Track	FilteredModels2
ProteinId	600742

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:303414..304912 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600742	gene_7976	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600742	mRNA_7976-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7976	CDS_7976	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:303414..304912+
coding sequence from alignment at scaffold_22:303414..304912+

mRNA sequence

>mRNA_7976 ID=mRNA_7976|Name=jgi.p|Nanoce1779_2|600742|organism=Nannochloropsis oceanica|type=mRNA|length=1499bp
TGCTTTTTGTCTCCCTTCGACTAGAAGAAGGCGATGGCGATGGCGAGGAC
GGGAGAGAGGAAGGGAGGGAGGGAAGGGTGATGGACCTACTAGACCTGCG
TTACTTGCAGGGCTTGGACGACGGAGGTGCAAGGTCCGTGAATGGGGTGC
GGGTAGCCGAGATGATCTTGAAGCTCGTGCCACACGTTGGACATTTCACC
AGCACCCTCCGCGCGGTCAAACTCTGGGCCAAGCGCCGAGGGCTATACAG
CAGCGTCCTCGGTTTCCTTGGAGGAGTAAGCTGGGCCATCCTGGTGGCAT
TTATCTGTCAACGCTACCCTCACGCCTCCCCCTCCAAGCTCCTCCTCGTC
TTCTTCCGCGTCTACTCTCAGTGGAACTGGCCTTCCGCCTCCACCCCCGT
CCTCCTCTGCCCCATCGTTTCCCCACCCCATCCTGCCTTTGACCACCTTT
CCGTCTGGTACCCCCCCTGGAGCAGCAGCAGCAGCAGCAACAACAGCTTG
ATGCCGCTAATTACTCCTGCATTTCCCTCTATGAATAGCGCGTTCAACGT
GGGCATGCCACAACTTAGAAGGCTACAGGAAGAGCTAAAACGAGCCGCAA
TCTTGACAAGAAGCTGGGCATTAGGCCCTACGAGTAAGCTAATGGCGAGG
AGGAAGGAAAGGTGGGAGAGTTTGTTTGAAGTTTCTCCGTACTTCACTCG
GTTTCACAACTTTCTGCAGGTGGACGTCTGGGTGCAGGAAGGGAGAGAGG
AAAAGAGGGGGGAGTTTAGCCGGTGGTTTGGGTGGGTGGAGTCAAGGCTA
CGGTCGCTAATTATGGCGCTGGAACAGCCGCCGCTTCTTCATAGCTACCC
TCTGGCTGAGGCCCTGCCTAATCCGTTTCCCTCTTCTGCTGCTTATCGCC
AGCAGGGGGAAGGAGCTAGGCGGCGGGTCTCGTTTTTTGTGGCGTTGGTG
TTTGAAGCTTCAGTCAACAACTACGACATTTCCCCTGCTGTAGAGGATTT
CTTGCTCAAGGTAAAGGTGGTTGATTCGATCCTGTCTCCGTCCCTCCTTC
ATTCCTTCCTTTTGATCTTTAGTAGACAGTAACACAGACGACTAAGCTCA
CTTTCGCCTCCCATATCCTTATTTCCCTCCCTCCCATTCTCCCCAGGTCA
ATATCTGGCAGCACCGTTCTCCTAGCATGCATATTGATATTCAGCATGTT
ACCCGTCCGCTCCTCCCTCCCTGCTGCTTCGCTCGAGAACTGTCTAATCC
TCCTCCTCTCCCTGTTGCTGAGCCTCTTCATCCTCCCCTGCAGCTGGAGC
ATCAGCAGCAAGAACAAAATAAGAGGAAGAGGGCAGTGGTGGATGGACAA
GGAGAGAGTAGTCAAAGAGGGTTGGAAAGTGAAGGATGTATAAATGGCCA
AGCTAGCACATACAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGGGGAGGA
ACGGCAGCGACAGCAGCAGCGGTACGGATGGCGATGCTCCGTATACAAG

protein sequence of jgi.p|Nanoce1779_2|600742

>mRNA_7976-protein ID=mRNA_7976-protein|Name=jgi.p|Nanoce1779_2|600742|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MDLLDLRYLQGLDDGGARSVNGVRVAEMILKLVPHVGHFTSTLRAVKLWA
KRRGLYSSVLGFLGGVSWAILVAFICQRYPHASPSKLLLVFFRVYSQWNW
PSASTPVLLCPIVSPPHPAFDHLSVWYPPWSSSSSSNNSLMPLITPAFPS
MNSAFNVGMPQLRRLQEELKRAAILTRSWALGPTSKLMARRKERWESLFE
VSPYFTRFHNFLQVDVWVQEGREEKRGEFSRWFGWVESRLRSLIMALEQP
PLLHSYPLAEALPNPFPSSAAYRQQGEGARRRVSFFVALVFEASVNNYDI
SPAVEDFLLKVKVVDSILSPSLLHSFLLIFSRQ*

mRNA from alignment at scaffold_22:303414..304912+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7976 ID=mRNA_7976|Name=jgi.p|Nanoce1779_2|600742|organism=Nannochloropsis oceanica|type=mRNA|length=1499bp|location=Sequence derived from alignment at scaffold_22:303414..304912+ (Nannochloropsis oceanica)
TGCTTTTTGTCTCCCTTCGACTAGAAGAAGGCGATGGCGATGGCGAGGAC
GGGAGAGAGGAAGGGAGGGAGGGAAGGGTGATGGACCTACTAGACCTGCG
TTACTTGCAGGGCTTGGACGACGGAGGTGCAAGGTCCGTGAATGGGGTGC
GGGTAGCCGAGATGATCTTGAAGCTCGTGCCACACGTTGGACATTTCACC
AGCACCCTCCGCGCGGTCAAACTCTGGGCCAAGCGCCGAGGGCTATACAG
CAGCGTCCTCGGTTTCCTTGGAGGAGTAAGCTGGGCCATCCTGGTGGCAT
TTATCTGTCAACGCTACCCTCACGCCTCCCCCTCCAAGCTCCTCCTCGTC
TTCTTCCGCGTCTACTCTCAGTGGAACTGGCCTTCCGCCTCCACCCCCGT
CCTCCTCTGCCCCATCGTTTCCCCACCCCATCCTGCCTTTGACCACCTTT
CCGTCTGGTACCCCCCCTGGAGCAGCAGCAGCAGCAGCAACAACAGCTTG
ATGCCGCTAATTACTCCTGCATTTCCCTCTATGAATAGCGCGTTCAACGT
GGGCATGCCACAACTTAGAAGGCTACAGGAAGAGCTAAAACGAGCCGCAA
TCTTGACAAGAAGCTGGGCATTAGGCCCTACGAGTAAGCTAATGGCGAGG
AGGAAGGAAAGGTGGGAGAGTTTGTTTGAAGTTTCTCCGTACTTCACTCG
GTTTCACAACTTTCTGCAGGTGGACGTCTGGGTGCAGGAAGGGAGAGAGG
AAAAGAGGGGGGAGTTTAGCCGGTGGTTTGGGTGGGTGGAGTCAAGGCTA
CGGTCGCTAATTATGGCGCTGGAACAGCCGCCGCTTCTTCATAGCTACCC
TCTGGCTGAGGCCCTGCCTAATCCGTTTCCCTCTTCTGCTGCTTATCGCC
AGCAGGGGGAAGGAGCTAGGCGGCGGGTCTCGTTTTTTGTGGCGTTGGTG
TTTGAAGCTTCAGTCAACAACTACGACATTTCCCCTGCTGTAGAGGATTT
CTTGCTCAAGGTAAAGGTGGTTGATTCGATCCTGTCTCCGTCCCTCCTTC
ATTCCTTCCTTTTGATCTTTAGTAGACAGTAACACAGACGACTAAGCTCA
CTTTCGCCTCCCATATCCTTATTTCCCTCCCTCCCATTCTCCCCAGGTCA
ATATCTGGCAGCACCGTTCTCCTAGCATGCATATTGATATTCAGCATGTT
ACCCGTCCGCTCCTCCCTCCCTGCTGCTTCGCTCGAGAACTGTCTAATCC
TCCTCCTCTCCCTGTTGCTGAGCCTCTTCATCCTCCCCTGCAGCTGGAGC
ATCAGCAGCAAGAACAAAATAAGAGGAAGAGGGCAGTGGTGGATGGACAA
GGAGAGAGTAGTCAAAGAGGGTTGGAAAGTGAAGGATGTATAAATGGCCA
AGCTAGCACATACAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGGGGAGGA
ACGGCAGCGACAGCAGCAGCGGTACGGATGGCGATGCTCCGTATACAAG

Coding sequence (CDS) from alignment at scaffold_22:303414..304912+

>mRNA_7976 ID=mRNA_7976|Name=jgi.p|Nanoce1779_2|600742|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_22:303414..304912+ (Nannochloropsis oceanica)
ATGGACCTACTAGACCTGCGTTACTTGCAGGGCTTGGACGACGGAGGTGC
AAGGTCCGTGAATGGGGTGCGGGTAGCCGAGATGATCTTGAAGCTCGTGC
CACACGTTGGACATTTCACCAGCACCCTCCGCGCGGTCAAACTCTGGGCC
AAGCGCCGAGGGCTATACAGCAGCGTCCTCGGTTTCCTTGGAGGAGTAAG
CTGGGCCATCCTGGTGGCATTTATCTGTCAACGCTACCCTCACGCCTCCC
CCTCCAAGCTCCTCCTCGTCTTCTTCCGCGTCTACTCTCAGTGGAACTGG
CCTTCCGCCTCCACCCCCGTCCTCCTCTGCCCCATCGTTTCCCCACCCCA
TCCTGCCTTTGACCACCTTTCCGTCTGGTACCCCCCCTGGAGCAGCAGCA
GCAGCAGCAACAACAGCTTGATGCCGCTAATTACTCCTGCATTTCCCTCT
ATGAATAGCGCGTTCAACGTGGGCATGCCACAACTTAGAAGGCTACAGGA
AGAGCTAAAACGAGCCGCAATCTTGACAAGAAGCTGGGCATTAGGCCCTA
CGAGTAAGCTAATGGCGAGGAGGAAGGAAAGGTGGGAGAGTTTGTTTGAA
GTTTCTCCGTACTTCACTCGGTTTCACAACTTTCTGCAGGTGGACGTCTG
GGTGCAGGAAGGGAGAGAGGAAAAGAGGGGGGAGTTTAGCCGGTGGTTTG
GGTGGGTGGAGTCAAGGCTACGGTCGCTAATTATGGCGCTGGAACAGCCG
CCGCTTCTTCATAGCTACCCTCTGGCTGAGGCCCTGCCTAATCCGTTTCC
CTCTTCTGCTGCTTATCGCCAGCAGGGGGAAGGAGCTAGGCGGCGGGTCT
CGTTTTTTGTGGCGTTGGTGTTTGAAGCTTCAGTCAACAACTACGACATT
TCCCCTGCTGTAGAGGATTTCTTGCTCAAGGTAAAGGTGGTTGATTCGAT
CCTGTCTCCGTCCCTCCTTCATTCCTTCCTTTTGATCTTTAGTAGACAGT
AA

Synonyms

Publications