jgi.p|Nanoce1779_2|600729, mRNA_7972 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600729
Unique NamemRNA_7972
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length497
Alignment locationscaffold_22:298526..299215 +

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Properties
Property NameValue
TranscriptId600815
TrackFilteredModels2
ProteinId600729
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:298526..299215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600729gene_7972Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600729mRNA_7972-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7972CDS_7972Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7972 ID=mRNA_7972|Name=jgi.p|Nanoce1779_2|600729|organism=Nannochloropsis oceanica|type=mRNA|length=497bp
TGAGTTCCGTTTTCTTGTGGCCTTGTTTGGCGGGTAGAGAGGAGAACGAA
GGATCTGTGTATTTTTCTGTAACAGCAGCAGCAGCAGCAGCAGTAGCAGC
ATTAACTTTTTCTGTTTTCGTCCTACGTTTCTTTGCCGCTGTTGCGATGG
CGACAATCGCCTCTTCTTTCTTTGTCTTCATAGTCGCCGCTTTCATCTCG
TGGACAGGTAATAGTAGTGCTTCTCCTTTTCCCTTTTCTTCTTCGACCGA
TGTTGTTGAAACCGCTCCTGCGGCAACTGCTATAGCTGCAGCCTTTGCCT
TACTAGAGGGACGCCCACGTTTCCTACTTGTGGGGTCGGAAGAGGGGGCG
GGACCGGCCGTGTCATTGTTGCCGGTGGTGGTTGTGATGGGGCTCCTCGA
AGGAGGGGTGTAGGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACA
TCGATCGATTGCTTTGAGCGTTGCTTCTGATACTCCTGCTTCTACTG
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protein sequence of jgi.p|Nanoce1779_2|600729

>mRNA_7972-protein ID=mRNA_7972-protein|Name=jgi.p|Nanoce1779_2|600729|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MATIASSFFVFIVAAFISWTGNSSASPFPFSSSTDVVETAPAATAIAAAF
ALLEGRPRFLLVGSEEGAGPAVSLLPVVVVMGLLEGGV*
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mRNA from alignment at scaffold_22:298526..299215+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7972 ID=mRNA_7972|Name=jgi.p|Nanoce1779_2|600729|organism=Nannochloropsis oceanica|type=mRNA|length=690bp|location=Sequence derived from alignment at scaffold_22:298526..299215+ (Nannochloropsis oceanica)
TGAGTTCCGTTTTCTTGTGGCCTTGTTTGGCGGGTAGAGAGGAGAACGAA
GGATCTGTGTATTTTTCTGTAACAGCAGCAGCAGCAGCAGCAGTAGCAGC
ATTAACTTTTTCTGTTTTCGTCCTACGTTTCTTTGCCGCTGTTGCGATGG
CGACAATCGCCTCTTCTTTCTTTGTCTTCATAGTCGCCGCTTTCATCTCG
TGGACAGGTAATAGTAGTGCTTCTCCTTTTCCCTTTTCTTCTTCGACCGA
TGTTGTTGAAACCGCTCCTGCGGCAACTGCTATAGCTGCAGCCTTTGCCT
TACTAGAGGGACGCCCACGTTTCCTACTTGTGGGGTCGGAAGAGGGGGCG
GGACCGGCCGTGTCATTGTTGCCGGTGGTGGTTGTGATGGGGCTCCTCGA
AGGAGGGGTGTAGGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGACATCTAGTGGTTTGGGAATGGT
ATGCATAGGTAAATTCTTAAACGTCGAAAAAAAATGACCTGCTTTGCTTT
TTATCTGCTCAGAGAGAAGCATTGATGAATTGAATGTCTGCTGTACCTGA
AACTCTATCACTCTTCTTCACTTCCGCCGCTGCGTTTGCCTTACCGATCG
ATTGCTTTGAGCGTTGCTTCTGATACTCCTGCTTCTACTG
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Coding sequence (CDS) from alignment at scaffold_22:298526..299215+

>mRNA_7972 ID=mRNA_7972|Name=jgi.p|Nanoce1779_2|600729|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at scaffold_22:298526..299215+ (Nannochloropsis oceanica)
ATGGCGACAATCGCCTCTTCTTTCTTTGTCTTCATAGTCGCCGCTTTCAT
CTCGTGGACAGGTAATAGTAGTGCTTCTCCTTTTCCCTTTTCTTCTTCGA
CCGATGTTGTTGAAACCGCTCCTGCGGCAACTGCTATAGCTGCAGCCTTT
GCCTTACTAGAGGGACGCCCACGTTTCCTACTTGTGGGGTCGGAAGAGGG
GGCGGGACCGGCCGTGTCATTGTTGCCGGTGGTGGTTGTGATGGGGCTCC
TCGAAGGAGGGGTGTAG
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Synonyms
Publications