jgi.p|Nanoce1779_2|600725, mRNA_7971 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600725
Unique NamemRNA_7971
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1913
Alignment locationscaffold_22:296683..298595 -

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Properties
Property NameValue
TranscriptId600811
TrackFilteredModels2
ProteinId600725
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:296683..298595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600725gene_7971Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600725mRNA_7971-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7971CDS_7971Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7971 ID=mRNA_7971|Name=jgi.p|Nanoce1779_2|600725|organism=Nannochloropsis oceanica|type=mRNA|length=1913bp
ACAGAAAAATACACAGATCCTTCGTTCTCCTCTCTACCCGCCAAACAAGG
CCACAAGAAAACGGAACTCATCCGCGATCTTGCAGCACCAGCGGCAACAG
CAGCAGTAGCAACAACAGCAGCAGCACCAGCGATTGCAGCGGCAGCAGTC
CCTCTCAACAAAGTCATACGTACCCGTACCCCGCGTTCCACCATCCCCCG
TGCACTCACGCCCCGGGTCGAAAACGGCTCGTCCTCTTCCTCCCTTATTT
CCTCCTCCTCATCCTCCTCCTCCTCCATATCACAACAAAAGAGGCTCTTC
CGTCTTCTCTCTTGGAATGTTGCAGGGCTACGAGGTCTTCTTAAAAAAGG
AGATGCCACCATTGACGCTTTCCGCTCCCTCCTTCTCCACGAAAAACCTG
ATATTCTCTGCCTCCAGGAGACCAAACTGCAAGAGGGTAGGCGCACTGCT
TTCGTCCCATTCTGTCGTACTCTCTCTTGTTTTCTTCCTCCCTCCCTCCC
TCCCTCCCTACCTTTTTCTCCCCTCTGCGGACTACGTACGTCGCTAAAGT
GAGCGTTGCTATGCATGCGTTAAGTTTGCCTCGGTGTCAAATGAACTGGC
CATTGTGTACCTTCAACCCTACCTTCCTCCCCCTCTTCCTCCTTCCCTTT
ACCAAATAGACCATGTGGCTGAAGTCAGCGCTGCCTTGCGTGCTTTACAT
TTGCCTGGATTTCACGGCAACTGGCATTGCTCCACCGCCAAAAAAGGCTA
TTCAGGCACCTCAATTTTAATAAGTGAACAAGCAGGGCTGAGTCTAGGCC
CTGGGCGGGTGAAGTGCGGGATGGAGGGGGAGGAGGACGGGGAGGGGGAA
GGAAGGGTCATAACGATTGATTTTGGTGCGTTTAGTTTGGTGAATGTCTA
CACGCCGAATAGTGGGGAGGGATTGAAGAGGTTGGAGTTTCGAACCAACA
GTTGGGACAGAGCATTTGAACAGCATTTGTTGCGGTTGCAGAGGGGAGGA
GAAGGAGGAAGAGGAGGAGGCGGAATAGAGGGAGGGAGGGCGGTGTTGTG
TTGTGGAGATTTGAATGTAGCGTTTGAGGATGCTGATTTTTACAATCCAG
GCGAGCCACGGATGGCTAAGGCTGCGGGGACAACACCGGAGGAACGAGCG
TCGTTCGGGCGCTTGTTGGAGGGAGCGGGGATGGTGGACACGTTCAGATT
TTACCATCCGGAGGCGACGGGGTGTTATTCGTATTGGTCGATGCGGGCAG
GGAACCGGCCTTTCAATCGAGGGATGCGCCTGGATTATTTCTTGGCAAGT
CGGAATATGATGAGGGGTAAGGGGGAGGGGAAGAAGGGAGTGCCAAGGGT
GTTGGACTCGTTTATTTTGGACCAGGCGACGGTGGGGTTGAGCGACCATG
CACCGGTTGGTGTGTTATTAGAGGTAGAGGGAGTGGGTGGAGCGCCAGAC
GGGAGGGGAAAATTGGGAGACTAAAAAAGATGCACGTCGTGTGCTTGTGT
ATGCACTCTCTTGCTATTTGGCTCATGGATTTGGGTTTTGGTTTGTTTCT
TTGCCTACCGGTCTGCTGATATTGTGTTAGATGCGTATGTGCCGGTCTCG
CCCTTGGCGCTTGGGTAGCCTTAACCAGCGGGGTCAAATAGCCAGCAGGC
TGTCGGAAGGCATAACTCATTTTCGTCGCATGCACAAGAACCCGCACACC
TCCTCCCCCTTCCTCCTCTCCCCTCCTTATTCCCCACTACCTTCTTTCTT
TGCCTGTCTTCCCTCTCTCCGCCTGTCTTTTTCCCTCTTCTTCACATTTT
CTTCCTCTCCCCCTTCCCCTCTCCTCTCCTCCTTTTGGCCGCTCTTCCCA
CCTTCCCTCCTCTTCCTCTTCCCTCCTCCTGCTTTTATTTGAAAGACGCG
AGCTTTATTCGCG
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protein sequence of jgi.p|Nanoce1779_2|600725

>mRNA_7971-protein ID=mRNA_7971-protein|Name=jgi.p|Nanoce1779_2|600725|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MEGEEDGEGEGRVITIDFGAFSLVNVYTPNSGEGLKRLEFRTNSWDRAFE
QHLLRLQRGGEGGRGGGGIEGGRAVLCCGDLNVAFEDADFYNPGEPRMAK
AAGTTPEERASFGRLLEGAGMVDTFRFYHPEATGCYSYWSMRAGNRPFNR
GMRLDYFLASRNMMRGKGEGKKGVPRVLDSFILDQATVGLSDHAPVGVLL
EVEGVGGAPDGRGKLGD*
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mRNA from alignment at scaffold_22:296683..298595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7971 ID=mRNA_7971|Name=jgi.p|Nanoce1779_2|600725|organism=Nannochloropsis oceanica|type=mRNA|length=1913bp|location=Sequence derived from alignment at scaffold_22:296683..298595- (Nannochloropsis oceanica)
ACAGAAAAATACACAGATCCTTCGTTCTCCTCTCTACCCGCCAAACAAGG
CCACAAGAAAACGGAACTCATCCGCGATCTTGCAGCACCAGCGGCAACAG
CAGCAGTAGCAACAACAGCAGCAGCACCAGCGATTGCAGCGGCAGCAGTC
CCTCTCAACAAAGTCATACGTACCCGTACCCCGCGTTCCACCATCCCCCG
TGCACTCACGCCCCGGGTCGAAAACGGCTCGTCCTCTTCCTCCCTTATTT
CCTCCTCCTCATCCTCCTCCTCCTCCATATCACAACAAAAGAGGCTCTTC
CGTCTTCTCTCTTGGAATGTTGCAGGGCTACGAGGTCTTCTTAAAAAAGG
AGATGCCACCATTGACGCTTTCCGCTCCCTCCTTCTCCACGAAAAACCTG
ATATTCTCTGCCTCCAGGAGACCAAACTGCAAGAGGGTAGGCGCACTGCT
TTCGTCCCATTCTGTCGTACTCTCTCTTGTTTTCTTCCTCCCTCCCTCCC
TCCCTCCCTACCTTTTTCTCCCCTCTGCGGACTACGTACGTCGCTAAAGT
GAGCGTTGCTATGCATGCGTTAAGTTTGCCTCGGTGTCAAATGAACTGGC
CATTGTGTACCTTCAACCCTACCTTCCTCCCCCTCTTCCTCCTTCCCTTT
ACCAAATAGACCATGTGGCTGAAGTCAGCGCTGCCTTGCGTGCTTTACAT
TTGCCTGGATTTCACGGCAACTGGCATTGCTCCACCGCCAAAAAAGGCTA
TTCAGGCACCTCAATTTTAATAAGTGAACAAGCAGGGCTGAGTCTAGGCC
CTGGGCGGGTGAAGTGCGGGATGGAGGGGGAGGAGGACGGGGAGGGGGAA
GGAAGGGTCATAACGATTGATTTTGGTGCGTTTAGTTTGGTGAATGTCTA
CACGCCGAATAGTGGGGAGGGATTGAAGAGGTTGGAGTTTCGAACCAACA
GTTGGGACAGAGCATTTGAACAGCATTTGTTGCGGTTGCAGAGGGGAGGA
GAAGGAGGAAGAGGAGGAGGCGGAATAGAGGGAGGGAGGGCGGTGTTGTG
TTGTGGAGATTTGAATGTAGCGTTTGAGGATGCTGATTTTTACAATCCAG
GCGAGCCACGGATGGCTAAGGCTGCGGGGACAACACCGGAGGAACGAGCG
TCGTTCGGGCGCTTGTTGGAGGGAGCGGGGATGGTGGACACGTTCAGATT
TTACCATCCGGAGGCGACGGGGTGTTATTCGTATTGGTCGATGCGGGCAG
GGAACCGGCCTTTCAATCGAGGGATGCGCCTGGATTATTTCTTGGCAAGT
CGGAATATGATGAGGGGTAAGGGGGAGGGGAAGAAGGGAGTGCCAAGGGT
GTTGGACTCGTTTATTTTGGACCAGGCGACGGTGGGGTTGAGCGACCATG
CACCGGTTGGTGTGTTATTAGAGGTAGAGGGAGTGGGTGGAGCGCCAGAC
GGGAGGGGAAAATTGGGAGACTAAAAAAGATGCACGTCGTGTGCTTGTGT
ATGCACTCTCTTGCTATTTGGCTCATGGATTTGGGTTTTGGTTTGTTTCT
TTGCCTACCGGTCTGCTGATATTGTGTTAGATGCGTATGTGCCGGTCTCG
CCCTTGGCGCTTGGGTAGCCTTAACCAGCGGGGTCAAATAGCCAGCAGGC
TGTCGGAAGGCATAACTCATTTTCGTCGCATGCACAAGAACCCGCACACC
TCCTCCCCCTTCCTCCTCTCCCCTCCTTATTCCCCACTACCTTCTTTCTT
TGCCTGTCTTCCCTCTCTCCGCCTGTCTTTTTCCCTCTTCTTCACATTTT
CTTCCTCTCCCCCTTCCCCTCTCCTCTCCTCCTTTTGGCCGCTCTTCCCA
CCTTCCCTCCTCTTCCTCTTCCCTCCTCCTGCTTTTATTTGAAAGACGCG
AGCTTTATTCGCG
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Coding sequence (CDS) from alignment at scaffold_22:296683..298595-

>mRNA_7971 ID=mRNA_7971|Name=jgi.p|Nanoce1779_2|600725|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_22:296683..298595- (Nannochloropsis oceanica)
ATGGAGGGGGAGGAGGACGGGGAGGGGGAAGGAAGGGTCATAACGATTGA
TTTTGGTGCGTTTAGTTTGGTGAATGTCTACACGCCGAATAGTGGGGAGG
GATTGAAGAGGTTGGAGTTTCGAACCAACAGTTGGGACAGAGCATTTGAA
CAGCATTTGTTGCGGTTGCAGAGGGGAGGAGAAGGAGGAAGAGGAGGAGG
CGGAATAGAGGGAGGGAGGGCGGTGTTGTGTTGTGGAGATTTGAATGTAG
CGTTTGAGGATGCTGATTTTTACAATCCAGGCGAGCCACGGATGGCTAAG
GCTGCGGGGACAACACCGGAGGAACGAGCGTCGTTCGGGCGCTTGTTGGA
GGGAGCGGGGATGGTGGACACGTTCAGATTTTACCATCCGGAGGCGACGG
GGTGTTATTCGTATTGGTCGATGCGGGCAGGGAACCGGCCTTTCAATCGA
GGGATGCGCCTGGATTATTTCTTGGCAAGTCGGAATATGATGAGGGGTAA
GGGGGAGGGGAAGAAGGGAGTGCCAAGGGTGTTGGACTCGTTTATTTTGG
ACCAGGCGACGGTGGGGTTGAGCGACCATGCACCGGTTGGTGTGTTATTA
GAGGTAGAGGGAGTGGGTGGAGCGCCAGACGGGAGGGGAAAATTGGGAGA
CTAA
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Synonyms
Publications