jgi.p|Nanoce1779_2|600685, mRNA_7956 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600685
Unique NamemRNA_7956
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1213
Alignment locationscaffold_22:264857..266213 +

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Properties
Property NameValue
TranscriptId600771
TrackFilteredModels2
ProteinId600685
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:264857..266213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600685gene_7956Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600685mRNA_7956-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7956CDS_7956Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7956 ID=mRNA_7956|Name=jgi.p|Nanoce1779_2|600685|organism=Nannochloropsis oceanica|type=mRNA|length=1213bp
GGGCGTGCATTGGCTCATGCACGAGAGCAAGATCCTGTATCGGGCCGTGC
ACAAGCGGCACCACTGCCAGATCCGCGACTTCTGCGCCTTGTCTGCCTGG
CAGGACTCTACACTCGAATTCGTGCTGATGGAGGTCTTCGGCGTTTTCCT
CTTTGCCCAGCTCTTCAACCCCTTGCCCTGGCACTTCCACGTCCTCTTCG
CCCTCATCAACGGCCTTGGTGCCGCGATAGATCACTCGGCTTTTTACATC
CCCGGCACCTTGATCGATGGCAGGTACCACTGGGATCACCACCTGCGCAT
CGACTACAACTTTTCGGAGCTGGAGTTTCTGGACTCTATGTTCGGGACAC
TTTACACCCACCACCATCCCCTCCTCTCCTCAAAGGCCGCTGTCGAGCTG
CAGCAGTCACCCCGCCTGCGCCGACGTAAGCAACCACACGCGCTCGACGA
AGATCAGCAGCGACTGCATCGGCAACTCAAGGAGGAGAAGAAGGAGAGCA
GTGACTATAAAGTGGAGACGCAGCAGCAGCAGCAGCAGCAGCAGCAACGG
TGGCAAGAGGTGGAAAAAGAACAAAAAGGGAAAGAAGAGGAAAGAGAGAC
CTGCAATTGCGTTGATGGCGAGTCAGCACCCGACGTGTGCCTCCCTGAAG
ACGAACAGTTAAGACCAAACACGCAAGTAGAGAGCAGTATCAACAGCAGC
AGCAACAGCAACAGTAACAACTGCTATGATAGCGTTAACAGTAAGAGCAG
CAGTAGAAGTCGGGAGGGGGAACTACCAGAGAGCGATACGCAATCATACG
ACCGAAAAAATGCTGCGTACCCCTTCTCTTTCGCCGACTCCCCGAAAGCT
AAGCCGTGGTCGTGATGGTCAGGGCGAGGTACCAGTGGTGTGTGTGTGAT
AAAAGGATAGGAGGGGCAGCAGCGTCTAAGTGTGTACTATGGAGGAAGGA
AAGAGGAGGCACTGAAGTGTGACCTATCAAAGGACGGGGAGGGTGACGAC
AACGAGGCCAGGTGGAGGGCAGTATCTGGCATCCAATGAGAGAGCCAAAT
GCTAGAGGAAAAGCAGAGAAGAGGAAAGTACTATACATTTTTTGGGGACA
TAGCGGTGGGCGATTGGCGCACCTTATTTCAAAAACTTAGGCGAGCACAG
ATAGATGTGTAGTAGAGAGAACATGAAAAAAACAGCGGAGAAGATAAAAA
CTGTAAACTTTTT
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protein sequence of jgi.p|Nanoce1779_2|600685

>mRNA_7956-protein ID=mRNA_7956-protein|Name=jgi.p|Nanoce1779_2|600685|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MHESKILYRAVHKRHHCQIRDFCALSAWQDSTLEFVLMEVFGVFLFAQLF
NPLPWHFHVLFALINGLGAAIDHSAFYIPGTLIDGRYHWDHHLRIDYNFS
ELEFLDSMFGTLYTHHHPLLSSKAAVELQQSPRLRRRKQPHALDEDQQRL
HRQLKEEKKESSDYKVETQQQQQQQQQRWQEVEKEQKGKEEERETCNCVD
GESAPDVCLPEDEQLRPNTQVESSINSSSNSNSNNCYDSVNSKSSSRSRE
GELPESDTQSYDRKNAAYPFSFADSPKAKPWS*
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mRNA from alignment at scaffold_22:264857..266213+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7956 ID=mRNA_7956|Name=jgi.p|Nanoce1779_2|600685|organism=Nannochloropsis oceanica|type=mRNA|length=1357bp|location=Sequence derived from alignment at scaffold_22:264857..266213+ (Nannochloropsis oceanica)
GGGCGTGCATTGGCTCATGCACGAGAGCAAGATCCTGTATCGGGCCGTGC
ACAAGCGGCACCACTGCCAGATCCGCGACTTCTGCGCCTTGTCTGCCTGG
CAGGACTCTACACTCGAATTCGTGCTGATGGAGGTCTTCGGCGTTTTCCT
CTTTGCCCAGCTCTTCAACCCCTTGCCCTGGCACTTCCACGTCCTCTTCG
CCCTCATCAACGGCCTTGGTGCCGCGATAGATCACTCGGCTTTTTACATC
CCCGGCACCTTGATCGATGGCAGGTACGGTTGAATAAAAAGGGATAATAC
CAAAGGGTCTGGGAGGAAGAACAAGTAGCGGCAAGATAACTTTAGAGTGG
ATAATAAGTGTTCGACAGCGCCCTTTGTCATTTACCTCTCCCCCCCTCTC
TTTTCACCCTCCCCTAGGTACCACTGGGATCACCACCTGCGCATCGACTA
CAACTTTTCGGAGCTGGAGTTTCTGGACTCTATGTTCGGGACACTTTACA
CCCACCACCATCCCCTCCTCTCCTCAAAGGCCGCTGTCGAGCTGCAGCAG
TCACCCCGCCTGCGCCGACGTAAGCAACCACACGCGCTCGACGAAGATCA
GCAGCGACTGCATCGGCAACTCAAGGAGGAGAAGAAGGAGAGCAGTGACT
ATAAAGTGGAGACGCAGCAGCAGCAGCAGCAGCAGCAGCAACGGTGGCAA
GAGGTGGAAAAAGAACAAAAAGGGAAAGAAGAGGAAAGAGAGACCTGCAA
TTGCGTTGATGGCGAGTCAGCACCCGACGTGTGCCTCCCTGAAGACGAAC
AGTTAAGACCAAACACGCAAGTAGAGAGCAGTATCAACAGCAGCAGCAAC
AGCAACAGTAACAACTGCTATGATAGCGTTAACAGTAAGAGCAGCAGTAG
AAGTCGGGAGGGGGAACTACCAGAGAGCGATACGCAATCATACGACCGAA
AAAATGCTGCGTACCCCTTCTCTTTCGCCGACTCCCCGAAAGCTAAGCCG
TGGTCGTGATGGTCAGGGCGAGGTACCAGTGGTGTGTGTGTGATAAAAGG
ATAGGAGGGGCAGCAGCGTCTAAGTGTGTACTATGGAGGAAGGAAAGAGG
AGGCACTGAAGTGTGACCTATCAAAGGACGGGGAGGGTGACGACAACGAG
GCCAGGTGGAGGGCAGTATCTGGCATCCAATGAGAGAGCCAAATGCTAGA
GGAAAAGCAGAGAAGAGGAAAGTACTATACATTTTTTGGGGACATAGCGG
TGGGCGATTGGCGCACCTTATTTCAAAAACTTAGGCGAGCACAGATAGAT
GTGTAGTAGAGAGAACATGAAAAAAACAGCGGAGAAGATAAAAACTGTAA
ACTTTTT
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Coding sequence (CDS) from alignment at scaffold_22:264857..266213+

>mRNA_7956 ID=mRNA_7956|Name=jgi.p|Nanoce1779_2|600685|organism=Nannochloropsis oceanica|type=CDS|length=1698bp|location=Sequence derived from alignment at scaffold_22:264857..266213+ (Nannochloropsis oceanica)
ATGCACGAGAGCAAGATCCTGTATCGGGCCGTGCACAAGCGGCACCACTG
CCAGATCCGCGACTTCTGCGCCTTGTCTGCCTGGCAGGACTCTACACTCG
AATTCGTGCTGATGGAGGTCTTCGGCGTTTTCCTCTTTGCCCAGCTCTTC
AACCCCTTGCCCTGGCACTTCCACGTCCTCTTCGCCCTCATCAACGGCCT
TGGTGCCGCGATAGATCACTCGGCTTTTTACATCCCCGGCACCTTGATCG
ATGGCAGGTACCACTGGGATCACCACCTGCGCATCGACTACAACTTTTCG
GAGCTGGAGTTTCTGGACTCTATGTTCGGGACACTTTACACCCACCACCA
TCCCCTCCTCTCCTCAAAGGCCGCTGTCGAGCTGCAGCAGTCACCCCGCC
TGCGCCGACGTAAGCAACCACACGCGCTCGACGAAGATCAGCAGCGACTG
CATCGGCAACTCAAGGAGGAGAAGAAGGAGAGCAGTGACTATAAAGTGGA
GACGCAGCAGCAGCAGCAGCAGCAGCAGCAACGGTGGCAAGAGGTGGAAA
AAGAACAAAAAGGGAAAGAAGAGGAAAGAGAGACCTGCAATTGCGTTGAT
GGCGAGTCAGCACCCGACGTGTGCCTCCCTGAAGACGAACAGTTAAGACC
AAACACGCAAGTAGAGAGCAGTATCAACAGCAGCAGCAACAGCAACAGTA
ACAACTGCTATGATAGCGTTAACAGTAAGAGCAGCAGTAGAAGTCGGGAG
GGGGAACTACCAGAGAGCGATACGCAATCATACGACCGAAAAAATGCTGC
GTACCCCTTCTCTTTCGCCGACTCCCCGAAAGCTAAGCCGTGGTCGTGAA
TGCACGAGAGCAAGATCCTGTATCGGGCCGTGCACAAGCGGCACCACTGC
CAGATCCGCGACTTCTGCGCCTTGTCTGCCTGGCAGGACTCTACACTCGA
ATTCGTGCTGATGGAGGTCTTCGGCGTTTTCCTCTTTGCCCAGCTCTTCA
ACCCCTTGCCCTGGCACTTCCACGTCCTCTTCGCCCTCATCAACGGCCTT
GGTGCCGCGATAGATCACTCGGCTTTTTACATCCCCGGCACCTTGATCGA
TGGCAGGTACCACTGGGATCACCACCTGCGCATCGACTACAACTTTTCGG
AGCTGGAGTTTCTGGACTCTATGTTCGGGACACTTTACACCCACCACCAT
CCCCTCCTCTCCTCAAAGGCCGCTGTCGAGCTGCAGCAGTCACCCCGCCT
GCGCCGACGTAAGCAACCACACGCGCTCGACGAAGATCAGCAGCGACTGC
ATCGGCAACTCAAGGAGGAGAAGAAGGAGAGCAGTGACTATAAAGTGGAG
ACGCAGCAGCAGCAGCAGCAGCAGCAGCAACGGTGGCAAGAGGTGGAAAA
AGAACAAAAAGGGAAAGAAGAGGAAAGAGAGACCTGCAATTGCGTTGATG
GCGAGTCAGCACCCGACGTGTGCCTCCCTGAAGACGAACAGTTAAGACCA
AACACGCAAGTAGAGAGCAGTATCAACAGCAGCAGCAACAGCAACAGTAA
CAACTGCTATGATAGCGTTAACAGTAAGAGCAGCAGTAGAAGTCGGGAGG
GGGAACTACCAGAGAGCGATACGCAATCATACGACCGAAAAAATGCTGCG
TACCCCTTCTCTTTCGCCGACTCCCCGAAAGCTAAGCCGTGGTCGTGA
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Synonyms
Publications