jgi.p|Nanoce1779_2|600584, mRNA_7940 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600584
Unique Name	mRNA_7940
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2804
Alignment location	scaffold_22:220300..223103 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600670
Track	FilteredModels2
ProteinId	600584

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:220300..223103 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600584	gene_7940	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600584	mRNA_7940-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7940	CDS_7940	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:220300..223103-
coding sequence from alignment at scaffold_22:220300..223103-

mRNA sequence

>mRNA_7940 ID=mRNA_7940|Name=jgi.p|Nanoce1779_2|600584|organism=Nannochloropsis oceanica|type=mRNA|length=2804bp
CTTCGATGAATGATGATCGTCTTGAACTCCCCCCCCATCCTTCCCGTGGT
CGATGTATGGACCCATTCACCAAACCTTTCGAGAAGCCTCCTTATCCTAC
TCAATATTTTCAAGCAAGCAGAGCAACCGAGCCAATTGCTTAAGAAATGA
ACCTTTCGCCACATTACAATTTCACTACCAGTATTGTTTACTGTGGCTCA
CTCGGTGGCTGACTGTTGCAACGTTGGCGGTCGTTGGCAAGCAGTAGTAG
TAGTATGTCATAGCTTAAAGGGGAGATTGGTCTCCTCCTTGATAAGGCGT
GCCTTTTTGACTCGCTAGGGCATGGCATAGGGCTTTGGAAATGTTGCCCA
CATCGTGTGCCATGCATTGGCTTACTTTCTGGAAGCCCCTTGGTACCTGC
TGGGTCCTAAAGCTTGCTCTATAGCAGGCGGGCATTGATGGGTGCAAATC
CGGCTCAACTTGATTATGAGCAGCATGACGAATGGAGACCTGATTGGTAC
ACACGCACGTACTTCTCACTACTAAGACCCTTCCACGTGGTCTCTATCAC
ACAGCTACACGTCTAGTAACCAGATAACAGCCGACCAAGCGCCTGAGTAA
CCCACGAAAAGGGTTCTGCTCCAACCCATCCATATATGACTACCTCTGCG
GCGCTTGGAGGATTTGAGGGGCATCAGCAGCAAATGAGGAGGCGGCAGTG
CCTTGAGAAGGAAGACAGCAACACCAGCACCTACCACTGCAATGGCCAGG
CTCAAGACACGGCCATGCCGCGCCCACAACGTCGCCACAGGAGCCGGAGC
AGCGGCGGCTCGCCCTGGGCATACCTCTGTTTGTTCGTGTGCCTTGCCGC
CTTGCTCACTTGTGCGCCTGTCGCCGCAGCCGTCACACGAGGCTTGCGAA
AACGCCAGGAGCAGCAACAAGCAGGGCCGCTCGTCATTAAGCTGAATGAG
ACTGTGCCCGTGGCTGAGGAAAGCAATTCCAAAGTTAGGCATAAGAAGAA
GCCCGAGGCCATTTCCTCTACTGAGCTCGAGCCCAAAAGCACAACCGTCA
TCCACGCAGCCGTGCCCCCATACAAGGTCGGCCGCGTCTCGGTGCCGCAC
TCGGACCTGACCCTCTCCCGCATCGCATACGGCTCGCTGCACTTTCCTGA
GTTTGAGGACAACGTGGAGGGCCTAACTGCGGCACTCGAGGCGTGCCAGG
AGGTCGGGGTGACAACCATCGATCTGGCCGATGTATATGGATGGTATGAG
GACGGGCAGGGCTCTGCCAACGATATTTTTGCCAAGGCCCTCAAGGCCAA
GCCCAGCCTCCGAGCGAACCTCGAGCTCGTGGTCAAATTCGGCATTCGTT
TAAGCGGTGGATACCATATCGATCTGTCGCCCGAGTGGATCCACGAGAGT
ATTGACAAGTACCTGAAGCTGTTCGACACCAAGTACGTGGACGTGTTCAT
GATCCACAACCCCGACCCGAATATGGACGTAAAGGCCATCGCTAAGGCCT
TCAAGGAGATCAAGGTGGCGGGCAAGGCCAAGGCGTTTGGCATCTCCAAC
TTTCACCAGTGGGAGTATGAGGCCCTCCGGGACGCTATGGCCGGGGAGGG
GCTCAAGCTGTCTGTGCACGAGATGGAAACCTCGGTGCTGCACCCCGACC
AGATCTCGGATGCGACTGTGGATTACTATTCGACGGGCGAGAATGAGATG
CGGATCTTGGGTTGGGGGGCTCTAGGCGGAGATCCGTATGGGGGCACGAA
TTTGTTGTTTGGTTCGCAGGGGGAGCGGGAGAAGCGGATCGTTAGTGCGC
TAACTGAGAAAGGGAAAGAGCTGGCTTTGGAGGAAGACGCGGGGAATGGG
AAGAAGCAGATTTTGACGTTCGAGCCTGACGAAGTGGCCGTGGCCTGGTT
GCTGCACCACAACGCTGGCATTGTGCCAATTATTGGGACGACGGCCGTGG
AGCGCTTGATTTCGCAGACGATTCCGGCGGAAAAAATTCCATTTCGTGAT
ACTGACTTCGACGAGATCTTGGCGGCGTTGCACTACTAGTGTGAATGGAT
TGAAAGGTATGGAGAGGACCCGAACAGAGAGGGAGTGTGTGTGTCTGTCT
GCCGCTGCTCTTTTTGGACCACCCAATCTTGGCTTCGGCCTGGACACAGT
GCTGGTGATGTGTGAAGCAGGGGATGAGGATACGTTCCTGCTATTCTCTT
GTTGGAAAGGAGAGCAAATAAAAAGAATGCTTATGGGAAAGTGATCGGAA
GGAAAGGATAAGAGAGGGAATGTGGTACCAACATGAACTAGATTCATTGC
GTGCCTAGGGACTATTCTCTTTCCCACCTAAAATATTGATGACGATGGGA
AGGAGAGCGAAAGGGGAGAAAAGGGAGTAGTCAGCGAACGACGGGCATGG
TATGATGAGTGAGGGTCTCGAAGGAGGCTGCACATCGCGACTCGGGGAGC
AGGCAGCCCAGGCAGGCAGCATCCAGGGCACGCAGCAGCAGCAGCAGCAG
CTGGAACACAAAAAGTAAACTAGCAGACACTATCATTCGTTTTCTGTTGA
ATAAATAAAAACAAAGGCGAGGCGAGGATGGAGAGGGATGCAATGATAAC
AACATTTGCATTGGCTCATGCCTCCCTCCGCGAGAAAATCAAGGCGAATG
ACCCTGGGAAGGGGAAGCGGGAGAGTCTTAAAGAAGGACAAAACCAAAAA
GGAAATAATATGTAGAGCAGTCTGACATTACAGGAAGGAAAAAGAGAGAG
GGCACAATTTTTTGTGCGGGAATGGCCAAAAGAAAGAAACTTAAGTCAGG
GAAA

protein sequence of jgi.p|Nanoce1779_2|600584

>mRNA_7940-protein ID=mRNA_7940-protein|Name=jgi.p|Nanoce1779_2|600584|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MTTSAALGGFEGHQQQMRRRQCLEKEDSNTSTYHCNGQAQDTAMPRPQRR
HRSRSSGGSPWAYLCLFVCLAALLTCAPVAAAVTRGLRKRQEQQQAGPLV
IKLNETVPVAEESNSKVRHKKKPEAISSTELEPKSTTVIHAAVPPYKVGR
VSVPHSDLTLSRIAYGSLHFPEFEDNVEGLTAALEACQEVGVTTIDLADV
YGWYEDGQGSANDIFAKALKAKPSLRANLELVVKFGIRLSGGYHIDLSPE
WIHESIDKYLKLFDTKYVDVFMIHNPDPNMDVKAIAKAFKEIKVAGKAKA
FGISNFHQWEYEALRDAMAGEGLKLSVHEMETSVLHPDQISDATVDYYST
GENEMRILGWGALGGDPYGGTNLLFGSQGEREKRIVSALTEKGKELALEE
DAGNGKKQILTFEPDEVAVAWLLHHNAGIVPIIGTTAVERLISQTIPAEK
IPFRDTDFDEILAALHY*

mRNA from alignment at scaffold_22:220300..223103-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7940 ID=mRNA_7940|Name=jgi.p|Nanoce1779_2|600584|organism=Nannochloropsis oceanica|type=mRNA|length=2804bp|location=Sequence derived from alignment at scaffold_22:220300..223103- (Nannochloropsis oceanica)
CTTCGATGAATGATGATCGTCTTGAACTCCCCCCCCATCCTTCCCGTGGT
CGATGTATGGACCCATTCACCAAACCTTTCGAGAAGCCTCCTTATCCTAC
TCAATATTTTCAAGCAAGCAGAGCAACCGAGCCAATTGCTTAAGAAATGA
ACCTTTCGCCACATTACAATTTCACTACCAGTATTGTTTACTGTGGCTCA
CTCGGTGGCTGACTGTTGCAACGTTGGCGGTCGTTGGCAAGCAGTAGTAG
TAGTATGTCATAGCTTAAAGGGGAGATTGGTCTCCTCCTTGATAAGGCGT
GCCTTTTTGACTCGCTAGGGCATGGCATAGGGCTTTGGAAATGTTGCCCA
CATCGTGTGCCATGCATTGGCTTACTTTCTGGAAGCCCCTTGGTACCTGC
TGGGTCCTAAAGCTTGCTCTATAGCAGGCGGGCATTGATGGGTGCAAATC
CGGCTCAACTTGATTATGAGCAGCATGACGAATGGAGACCTGATTGGTAC
ACACGCACGTACTTCTCACTACTAAGACCCTTCCACGTGGTCTCTATCAC
ACAGCTACACGTCTAGTAACCAGATAACAGCCGACCAAGCGCCTGAGTAA
CCCACGAAAAGGGTTCTGCTCCAACCCATCCATATATGACTACCTCTGCG
GCGCTTGGAGGATTTGAGGGGCATCAGCAGCAAATGAGGAGGCGGCAGTG
CCTTGAGAAGGAAGACAGCAACACCAGCACCTACCACTGCAATGGCCAGG
CTCAAGACACGGCCATGCCGCGCCCACAACGTCGCCACAGGAGCCGGAGC
AGCGGCGGCTCGCCCTGGGCATACCTCTGTTTGTTCGTGTGCCTTGCCGC
CTTGCTCACTTGTGCGCCTGTCGCCGCAGCCGTCACACGAGGCTTGCGAA
AACGCCAGGAGCAGCAACAAGCAGGGCCGCTCGTCATTAAGCTGAATGAG
ACTGTGCCCGTGGCTGAGGAAAGCAATTCCAAAGTTAGGCATAAGAAGAA
GCCCGAGGCCATTTCCTCTACTGAGCTCGAGCCCAAAAGCACAACCGTCA
TCCACGCAGCCGTGCCCCCATACAAGGTCGGCCGCGTCTCGGTGCCGCAC
TCGGACCTGACCCTCTCCCGCATCGCATACGGCTCGCTGCACTTTCCTGA
GTTTGAGGACAACGTGGAGGGCCTAACTGCGGCACTCGAGGCGTGCCAGG
AGGTCGGGGTGACAACCATCGATCTGGCCGATGTATATGGATGGTATGAG
GACGGGCAGGGCTCTGCCAACGATATTTTTGCCAAGGCCCTCAAGGCCAA
GCCCAGCCTCCGAGCGAACCTCGAGCTCGTGGTCAAATTCGGCATTCGTT
TAAGCGGTGGATACCATATCGATCTGTCGCCCGAGTGGATCCACGAGAGT
ATTGACAAGTACCTGAAGCTGTTCGACACCAAGTACGTGGACGTGTTCAT
GATCCACAACCCCGACCCGAATATGGACGTAAAGGCCATCGCTAAGGCCT
TCAAGGAGATCAAGGTGGCGGGCAAGGCCAAGGCGTTTGGCATCTCCAAC
TTTCACCAGTGGGAGTATGAGGCCCTCCGGGACGCTATGGCCGGGGAGGG
GCTCAAGCTGTCTGTGCACGAGATGGAAACCTCGGTGCTGCACCCCGACC
AGATCTCGGATGCGACTGTGGATTACTATTCGACGGGCGAGAATGAGATG
CGGATCTTGGGTTGGGGGGCTCTAGGCGGAGATCCGTATGGGGGCACGAA
TTTGTTGTTTGGTTCGCAGGGGGAGCGGGAGAAGCGGATCGTTAGTGCGC
TAACTGAGAAAGGGAAAGAGCTGGCTTTGGAGGAAGACGCGGGGAATGGG
AAGAAGCAGATTTTGACGTTCGAGCCTGACGAAGTGGCCGTGGCCTGGTT
GCTGCACCACAACGCTGGCATTGTGCCAATTATTGGGACGACGGCCGTGG
AGCGCTTGATTTCGCAGACGATTCCGGCGGAAAAAATTCCATTTCGTGAT
ACTGACTTCGACGAGATCTTGGCGGCGTTGCACTACTAGTGTGAATGGAT
TGAAAGGTATGGAGAGGACCCGAACAGAGAGGGAGTGTGTGTGTCTGTCT
GCCGCTGCTCTTTTTGGACCACCCAATCTTGGCTTCGGCCTGGACACAGT
GCTGGTGATGTGTGAAGCAGGGGATGAGGATACGTTCCTGCTATTCTCTT
GTTGGAAAGGAGAGCAAATAAAAAGAATGCTTATGGGAAAGTGATCGGAA
GGAAAGGATAAGAGAGGGAATGTGGTACCAACATGAACTAGATTCATTGC
GTGCCTAGGGACTATTCTCTTTCCCACCTAAAATATTGATGACGATGGGA
AGGAGAGCGAAAGGGGAGAAAAGGGAGTAGTCAGCGAACGACGGGCATGG
TATGATGAGTGAGGGTCTCGAAGGAGGCTGCACATCGCGACTCGGGGAGC
AGGCAGCCCAGGCAGGCAGCATCCAGGGCACGCAGCAGCAGCAGCAGCAG
CTGGAACACAAAAAGTAAACTAGCAGACACTATCATTCGTTTTCTGTTGA
ATAAATAAAAACAAAGGCGAGGCGAGGATGGAGAGGGATGCAATGATAAC
AACATTTGCATTGGCTCATGCCTCCCTCCGCGAGAAAATCAAGGCGAATG
ACCCTGGGAAGGGGAAGCGGGAGAGTCTTAAAGAAGGACAAAACCAAAAA
GGAAATAATATGTAGAGCAGTCTGACATTACAGGAAGGAAAAAGAGAGAG
GGCACAATTTTTTGTGCGGGAATGGCCAAAAGAAAGAAACTTAAGTCAGG
GAAA

Coding sequence (CDS) from alignment at scaffold_22:220300..223103-

>mRNA_7940 ID=mRNA_7940|Name=jgi.p|Nanoce1779_2|600584|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_22:220300..223103- (Nannochloropsis oceanica)
ATGACTACCTCTGCGGCGCTTGGAGGATTTGAGGGGCATCAGCAGCAAAT
GAGGAGGCGGCAGTGCCTTGAGAAGGAAGACAGCAACACCAGCACCTACC
ACTGCAATGGCCAGGCTCAAGACACGGCCATGCCGCGCCCACAACGTCGC
CACAGGAGCCGGAGCAGCGGCGGCTCGCCCTGGGCATACCTCTGTTTGTT
CGTGTGCCTTGCCGCCTTGCTCACTTGTGCGCCTGTCGCCGCAGCCGTCA
CACGAGGCTTGCGAAAACGCCAGGAGCAGCAACAAGCAGGGCCGCTCGTC
ATTAAGCTGAATGAGACTGTGCCCGTGGCTGAGGAAAGCAATTCCAAAGT
TAGGCATAAGAAGAAGCCCGAGGCCATTTCCTCTACTGAGCTCGAGCCCA
AAAGCACAACCGTCATCCACGCAGCCGTGCCCCCATACAAGGTCGGCCGC
GTCTCGGTGCCGCACTCGGACCTGACCCTCTCCCGCATCGCATACGGCTC
GCTGCACTTTCCTGAGTTTGAGGACAACGTGGAGGGCCTAACTGCGGCAC
TCGAGGCGTGCCAGGAGGTCGGGGTGACAACCATCGATCTGGCCGATGTA
TATGGATGGTATGAGGACGGGCAGGGCTCTGCCAACGATATTTTTGCCAA
GGCCCTCAAGGCCAAGCCCAGCCTCCGAGCGAACCTCGAGCTCGTGGTCA
AATTCGGCATTCGTTTAAGCGGTGGATACCATATCGATCTGTCGCCCGAG
TGGATCCACGAGAGTATTGACAAGTACCTGAAGCTGTTCGACACCAAGTA
CGTGGACGTGTTCATGATCCACAACCCCGACCCGAATATGGACGTAAAGG
CCATCGCTAAGGCCTTCAAGGAGATCAAGGTGGCGGGCAAGGCCAAGGCG
TTTGGCATCTCCAACTTTCACCAGTGGGAGTATGAGGCCCTCCGGGACGC
TATGGCCGGGGAGGGGCTCAAGCTGTCTGTGCACGAGATGGAAACCTCGG
TGCTGCACCCCGACCAGATCTCGGATGCGACTGTGGATTACTATTCGACG
GGCGAGAATGAGATGCGGATCTTGGGTTGGGGGGCTCTAGGCGGAGATCC
GTATGGGGGCACGAATTTGTTGTTTGGTTCGCAGGGGGAGCGGGAGAAGC
GGATCGTTAGTGCGCTAACTGAGAAAGGGAAAGAGCTGGCTTTGGAGGAA
GACGCGGGGAATGGGAAGAAGCAGATTTTGACGTTCGAGCCTGACGAAGT
GGCCGTGGCCTGGTTGCTGCACCACAACGCTGGCATTGTGCCAATTATTG
GGACGACGGCCGTGGAGCGCTTGATTTCGCAGACGATTCCGGCGGAAAAA
ATTCCATTTCGTGATACTGACTTCGACGAGATCTTGGCGGCGTTGCACTA
CTAG

Synonyms

Publications