jgi.p|Nanoce1779_2|600580, mRNA_7939 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600580
Unique NamemRNA_7939
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length880
Alignment locationscaffold_22:219330..220299 +

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Properties
Property NameValue
TranscriptId600666
TrackFilteredModels2
ProteinId600580
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:219330..220299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600580gene_7939Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600580mRNA_7939-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7939CDS_7939Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7939 ID=mRNA_7939|Name=jgi.p|Nanoce1779_2|600580|organism=Nannochloropsis oceanica|type=mRNA|length=880bp
AGTTGCACAGCCGCTCCTACACCACCCTACCATTATGCGTAACCTTGTCC
TCGTGGCGATCGCACTGGCTTCGTCCACATCCGCCTTTATGGTGCCCACT
AGTGGGCGTGTCTTTGGTTCCACTTCCCAGATCTCTTCTTCCCGGGCAGA
GGGCAAGGGTCGTATGTACATGCTTTTCGGCGGGAGCGACAAGAAGAAGA
AGGAGGAGGGCGGGGGTGCCAAGCCTGCCGGCAAGTTGAACCCCTTCGAT
GCCATGGCCAAGATGAATGAGTTGGCTACCAAGAGCAACACATTGACGAA
GGACCTGGCCGGTACTTTTGTTTCTGGCCAAGCGATGGACGGTAAAGTGA
AGGTGACATTTACAGGCACTCAAGTGCCCATGGAGGTGGAGATCACGGAG
GATGCCCTGGCCGGGGGAGCGGCGGCGCTGTCGGCGGCTCTGACGGAGGC
GATGAAGGAAGGCCACACCAAATCCGTCGGGCTCCAGCAATCCAAGCTGA
CAGCGTTCTATGACGAGTTGGGCTTGGGGGCTGCCATGAAAGAGATGGGC
AAGGGTGTGGGCGGGCAACAGTAAACGAAAGAAGAGCATATGTCACAGCG
ATAGACAGACAGCATTTAGAAGGAGTAAGGCAACGCAGCCGCACGAACGC
TGAAAGAAGCAATTTTTAAGACACTAAACGTTTTGATAAAAAAGGGAGTA
GATCCACCCTTCCCAACCCCCACCTCGCTGACTTGAGGGTTGAAAACAAA
GAAAGAAATGGAAACAACGGAGAAACCAAAGAGCGCTTTTGGAAAGTATG
CCAGCTGTTATGTTCGAGCCAACCCCTACCTACACAGTCAATTTCAAGAA
AATAAAAAGCAACTACCTTGCAAGCGACGA
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protein sequence of jgi.p|Nanoce1779_2|600580

>mRNA_7939-protein ID=mRNA_7939-protein|Name=jgi.p|Nanoce1779_2|600580|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MRNLVLVAIALASSTSAFMVPTSGRVFGSTSQISSSRAEGKGRMYMLFGG
SDKKKKEEGGGAKPAGKLNPFDAMAKMNELATKSNTLTKDLAGTFVSGQA
MDGKVKVTFTGTQVPMEVEITEDALAGGAAALSAALTEAMKEGHTKSVGL
QQSKLTAFYDELGLGAAMKEMGKGVGGQQ*
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mRNA from alignment at scaffold_22:219330..220299+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7939 ID=mRNA_7939|Name=jgi.p|Nanoce1779_2|600580|organism=Nannochloropsis oceanica|type=mRNA|length=970bp|location=Sequence derived from alignment at scaffold_22:219330..220299+ (Nannochloropsis oceanica)
AGTTGCACAGCCGCTCCTACACCACCCTACCATTATGCGTAACCTTGTCC
TCGTGGCGATCGCACTGGCTTCGTCCACATCCGCCTTTATGGTGCCCACT
AGTGGGCGTGTCTTTGGTTCCACTTCCCAGATCTCTTCTTCCCGGGCAGA
GGGCAAGGTAAGTGTTGAAGAGGCCTAGAAGTTTTTGCGAAGGGGGATGA
CTACACACTATCTCGCGTTCTGACACGCACTCCCTCCTCAATTGCAGGGT
CGTATGTACATGCTTTTCGGCGGGAGCGACAAGAAGAAGAAGGAGGAGGG
CGGGGGTGCCAAGCCTGCCGGCAAGTTGAACCCCTTCGATGCCATGGCCA
AGATGAATGAGTTGGCTACCAAGAGCAACACATTGACGAAGGACCTGGCC
GGTACTTTTGTTTCTGGCCAAGCGATGGACGGTAAAGTGAAGGTGACATT
TACAGGCACTCAAGTGCCCATGGAGGTGGAGATCACGGAGGATGCCCTGG
CCGGGGGAGCGGCGGCGCTGTCGGCGGCTCTGACGGAGGCGATGAAGGAA
GGCCACACCAAATCCGTCGGGCTCCAGCAATCCAAGCTGACAGCGTTCTA
TGACGAGTTGGGCTTGGGGGCTGCCATGAAAGAGATGGGCAAGGGTGTGG
GCGGGCAACAGTAAACGAAAGAAGAGCATATGTCACAGCGATAGACAGAC
AGCATTTAGAAGGAGTAAGGCAACGCAGCCGCACGAACGCTGAAAGAAGC
AATTTTTAAGACACTAAACGTTTTGATAAAAAAGGGAGTAGATCCACCCT
TCCCAACCCCCACCTCGCTGACTTGAGGGTTGAAAACAAAGAAAGAAATG
GAAACAACGGAGAAACCAAAGAGCGCTTTTGGAAAGTATGCCAGCTGTTA
TGTTCGAGCCAACCCCTACCTACACAGTCAATTTCAAGAAAATAAAAAGC
AACTACCTTGCAAGCGACGA
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Coding sequence (CDS) from alignment at scaffold_22:219330..220299+

>mRNA_7939 ID=mRNA_7939|Name=jgi.p|Nanoce1779_2|600580|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_22:219330..220299+ (Nannochloropsis oceanica)
ATGCGTAACCTTGTCCTCGTGGCGATCGCACTGGCTTCGTCCACATCCGC
CTTTATGGTGCCCACTAGTGGGCGTGTCTTTGGTTCCACTTCCCAGATCT
CTTCTTCCCGGGCAGAGGGCAAGGGTCGTATGTACATGCTTTTCGGCGGG
AGCGACAAGAAGAAGAAGGAGGAGGGCGGGGGTGCCAAGCCTGCCGGCAA
GTTGAACCCCTTCGATGCCATGGCCAAGATGAATGAGTTGGCTACCAAGA
GCAACACATTGACGAAGGACCTGGCCGGTACTTTTGTTTCTGGCCAAGCG
ATGGACGGTAAAGTGAAGGTGACATTTACAGGCACTCAAGTGCCCATGGA
GGTGGAGATCACGGAGGATGCCCTGGCCGGGGGAGCGGCGGCGCTGTCGG
CGGCTCTGACGGAGGCGATGAAGGAAGGCCACACCAAATCCGTCGGGCTC
CAGCAATCCAAGCTGACAGCGTTCTATGACGAGTTGGGCTTGGGGGCTGC
CATGAAAGAGATGGGCAAGGGTGTGGGCGGGCAACAGTAAATGCGTAACC
TTGTCCTCGTGGCGATCGCACTGGCTTCGTCCACATCCGCCTTTATGGTG
CCCACTAGTGGGCGTGTCTTTGGTTCCACTTCCCAGATCTCTTCTTCCCG
GGCAGAGGGCAAGGGTCGTATGTACATGCTTTTCGGCGGGAGCGACAAGA
AGAAGAAGGAGGAGGGCGGGGGTGCCAAGCCTGCCGGCAAGTTGAACCCC
TTCGATGCCATGGCCAAGATGAATGAGTTGGCTACCAAGAGCAACACATT
GACGAAGGACCTGGCCGGTACTTTTGTTTCTGGCCAAGCGATGGACGGTA
AAGTGAAGGTGACATTTACAGGCACTCAAGTGCCCATGGAGGTGGAGATC
ACGGAGGATGCCCTGGCCGGGGGAGCGGCGGCGCTGTCGGCGGCTCTGAC
GGAGGCGATGAAGGAAGGCCACACCAAATCCGTCGGGCTCCAGCAATCCA
AGCTGACAGCGTTCTATGACGAGTTGGGCTTGGGGGCTGCCATGAAAGAG
ATGGGCAAGGGTGTGGGCGGGCAACAGTAA
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Synonyms
Publications