jgi.p|Nanoce1779_2|600555, mRNA_7931 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600555
Unique Name	mRNA_7931
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3634
Alignment location	scaffold_22:201657..205347 +

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Properties


Property Name	Value
TranscriptId	600641
Track	FilteredModels2
ProteinId	600555

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:201657..205347 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600555	gene_7931	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600555	mRNA_7931-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7931	CDS_7931	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:201657..205347+
coding sequence from alignment at scaffold_22:201657..205347+

mRNA sequence

>mRNA_7931 ID=mRNA_7931|Name=jgi.p|Nanoce1779_2|600555|organism=Nannochloropsis oceanica|type=mRNA|length=3634bp
GGAGGGAGTCGTTGTTCGACTGGAGCTGCTGTTGTGGGCCTTGCGGTTCA
TCATAACATCCTGCTGCTGCTGTTTATGGATGCTGGCAGTGGCAATGGCA
GCCTTGTTTTTGTTCTTCTCCGCCTTCTTCTTCTTGGTGCTGGTATTGCT
GGTATTGCTGCTGTTGCCACTGATGTCGCCAGAGGTCCCCATGGCGCTGT
AGGCTGTGGTTGGTATAGACGCCACAGGCTTGCACTCTTTGACCCGCTGC
ACCGACCACTGCTGCACCGACCACTGCTGCTCTTGGTGCTGGCGCTGGTG
CGGGTGCTGTGCACACTCCTGCCGGCGACTGTACTGCAACATCTGTTCAA
CGAGAGGGTGAAGCGCTGCAGGAATAGTGATTGTTACCAGAGGGGATGGA
GGCGAGGACGAGGACGAGGACGAAGACGAGGACGAGGACGAGGACAAGAA
AGGAACTGAGGAGAAAGCTTTGGTTTCTTCCTCCTCGCGCACCAGTGAGC
ATGGGATGCTTCCTGCCTTTGCCGACACGTCCATCTCATCCTCCTCGTAC
TTTTCCTCGTCATGAAGGTGGTAGTACTTCTGCTGTTGCTCTTGTTGCAT
CTCGGCAGCCGTTGGCACACACACTCCTCCCTCCATCTCGTCAGATGCGC
TCTCGCGCATAGACTCATCTTCCATCTTCTCCTGCGAGCCGCGCATCTTA
CACAACTCATCAGTCATGGCCCTCTCTTTACACTGCTCTTCCTTTTTCAC
TCCCTTTTCTTCCTCCTCCTCCTCCTCTTCTCTCCCCTCCTCATTCCCTG
GCTCATGCCCCCTAGGACAAAATGAGGGCGGACTTGCCGAAGCTCCTGTA
TCATCCTCATTATCTGCCTTTTTGCCCATACCCAACCCACATGCCGACGA
CGAAGCCACAATTTCTTTCTTCTGCTTGTCCACTACCTGCAATCGCTTCG
ACTCTAAGGGCAGGGGCGTTATAGCCGCTCCCTCCGTCCTTTCCTTCTCC
TCCGTCTCCCCTTCGTCCTGCTGTTTATTCCCCCCGGACGACACTCGAGC
CTCAATGACCGTAACAGTTACCTCCCCCATCACTTCCTCCCTCTCCTCTG
TGATGTGTACGGATTCTGAAGGGACAAGAACGACGGAGGGTTTGGCCTCC
TCCTTGGCCAACTCCTGCTGCCTCTGCTGCTGCTTGCTACGCTTTTCGGG
CGACTTGCGACGCTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGC
TGCTCCTGCTACGACTCAAGCTGCAACTTTCTCCATTCCCACCACCCATT
TCTCCCTTCTTTTTCTGCTGCTGCTGCTGCGTCTGTGCTTTGCCTCCCTT
CGCTGCTGCCTCTGACCGAGCAGGCCAGAAGGATCCTGAAAACAACTTCT
GCTCCTGCGCCGCTACTCCTGTGGCTGCACTTGCTCCTTGCTTTCTCTTC
CCTCCTCCTGCCGCTGCTGTCGCCAGGAAACATCTGGCCAAACGAACCCC
ACGCTGGCAAGTCGACAAAAAGACGGAAGGAAGGGAAACATTCCACGCCT
GAAACCGCTTGCTCAAGTGAAACACCGCTTGACGTGCCTTTTCGTAACAC
GCTTTCCCTTTCTCACCTTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
ACTACCCCGTCGAACAGCAGCAGCCGCAAACAAGGCTGCCCTCTTCTTGT
GGCGGATGGTGCGGGCTCGAGAGCGTTTGCGTGACCAGTAAAAGAATACT
CCTCCAATTAAGCAGAGCAAGACCGCACAAGAGGTAAAACCCGAACACAT
AACATTCCCATCTCTACTGTTGCTGCTGCTCCGGCTGGAGGGTGGGAAAG
AGGTTGAGGAGGAGGGGGAGGATGAGGACTTGCGGTGGCTGTGCATGCCC
GGTAGTGCCTGATTCTGGGTCCCCGCGGGTGTTTCGTGCAAAGGACGACG
AGATGCAGCCAGTGCATGTTCCCGCACCTTCATGACAGCCAAAAAAACCT
TCCCTCGGGATCGCGACTCCGACATGCCTGTTCCTTCCTTATTCACTTTG
TCCCTACTCCTGTTGCTGCTCGAGCGACGCATTTCCGAGTCCAACGCCGC
CCACCCTTGCCGAGAGACCTCGTCTATCAGCGCCAGATATCCCCGTCCCT
CCGCCAGTATCTCATCCACCATCTTGGTGGCCTCCGCAATCACATCCCCT
TCCTTGCCTCCTTCCTCCCTCCCTTTACTCTCTCTTGTCTTGGCGTGTAC
CACGCGCTGCAGGGCCCGTTGCTCAACGACACGCAACCAGACCTTGGCCT
TCTCCAGATAGGATTGGGCGTCTGCTACTTTTGGCGATGATGTCAATTGC
CATACCAGGTCCAGAAGGAAAGCCCGCATGATCTGTGCTTCATTCCACGC
TACAAAATTACTGCTGCTGCTATCGTCGTCTCGCCAAGCAGTGGCAAGCG
CATGAGGGGGGGAAGCAGACAAAAGAGCAATCTTGTCCACCATCGCCATC
GCCCGCATCCGGAATGCAGCAGCCTCCTGCTGCTGTAATTCCCACACCCC
GTAGCCCATCGGTATGTTCTGTGCTGGCAGGTCGGCCTCTTCCCGTCGCT
TGGCTGTGACATATCGGGCCAACAGGTCGCCCCCTCTCCCTGCCTCGTGC
TGCGGTTGTTGCTGCTGCTGTTGGACTTCAGCGTACAGATCCGCCAGAGC
TACGTAGCAAGGGTAGTAACTGACAGCTGCGGTCCCATGGTCAAGGGCTG
ATGAATGCGAGTAAGAGGAGAAGGTGAGTGTCTCGGGGAGGCTGTTAAGA
GCTACCGCAGCTTCTGCCGATGAGGGACCAGATTGCTGAGATAAACTGGG
CTTTGTGGGGGGAATAGTGTGTAACGGAGCGAATGGCCCTGCTGTTTGCA
ATGTATAAAACTCGGGGCAGAAAGTTTCCACATCTTCAACAGCTCGAAGA
ATGAGGGGGCTCTGACCCTCGTCTCGGCCCCGCACGTCTGCCTGATGATT
GTCCCCTTGCTGCTTCTGCTGCCGTTCAGCCAATGACAAGGCCTGTCTGT
GTATGATCTGCGTATGCGTCATCAACAAAATACCATTGTCGTGCAGCCCC
GCCCGCCGCAACTGTTCCTCCACTCCTCGCCACTGGTGCAAGTTACTTTC
CAGAAGGTCCAAGGCCTGCTCCAGGGCTGCCGGATCAATCGCGTCACTCA
CGTCGAGCAGCATACGGGCCTCGTTGTAGTGGCTCACCATATTGTCAAAA
GCGGCGTTGTCATGCTCGCCAATGTTATGGCGGCGCGAGGAGAGGGCGGA
AGGGTGAGCGACAACAGCTCCGTTTCCCCCGTCATCCGTTACTCTGTCGC
ACCGACCCTCGCTTGACATGCCCTCTTGCACCGTCGGCCTGCTGACATGA
GCTAAGGATGCTCCGAACAGTAGTAGCAAGAGGGCGGCGGGGGTGGGATG
ACGTGGGCTGGCCATGGCGGCGTGGTACGTGACCAAGTTGGGATCCAGCC
CTGGCTTCGAGCCACCCGCTGCCTGGCTGGTTCTGCTTAGCCTTGTTTGT
CCAGTAAACACAACGGGGGCACGCCAACCTGCGAATTTGCGTGTGTGAGC
AACAACGGCGTCTGTGTGTGACTGGAGCTGCTGT

protein sequence of jgi.p|Nanoce1779_2|600555

>mRNA_7931-protein ID=mRNA_7931-protein|Name=jgi.p|Nanoce1779_2|600555|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MALSLHCSSFFTPFSSSSSSSSLPSSFPGSCPLGQNEGGLAEAPVSSSLS
AFLPIPNPHADDEATISFFCLSTTCNRFDSKGRGVIAAPSVLSFSSVSPS
SCCLFPPDDTRASMTVTVTSPITSSLSSVMCTDSEGTRTTEGLASSLANS
CCLCCCLLRFSGDLRRLLLLLLLLLLLLLLLLRLKLQLSPFPPPISPFFF
CCCCCVCALPPFAAASDRAGQKDPENNFCSCAATPVAALAPCFLFPPPAA
AVARKHLAKRTPRWQVDKKTEGRETFHA*

mRNA from alignment at scaffold_22:201657..205347+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7931 ID=mRNA_7931|Name=jgi.p|Nanoce1779_2|600555|organism=Nannochloropsis oceanica|type=mRNA|length=3691bp|location=Sequence derived from alignment at scaffold_22:201657..205347+ (Nannochloropsis oceanica)
GGAGGGAGTCGTTGTTCGACTGGAGCTGCTGTTGTGGGCCTTGCGGTTCA
TCATAACATCCTGCTGCTGCTGTTTATGGATGCTGGCAGTGGCAATGGCA
GCCTTGTTTTTGTTCTTCTCCGCCTTCTTCTTCTTGGTGCTGGTATTGCT
GGTATTGCTGCTGTTGCCACTGATGTCGCCAGAGGTCCCCATGGCGCTGT
AGGCTGTGGTTGGTATAGACGCCACAGGCTTGCACTCTTTGACCCGCTGC
ACCGACCACTGCTGCACCGACCACTGCTGCTCTTGGTGCTGGCGCTGGTG
CGGGTGCTGTGCACACTCCTGCCGGCGACTGTACTGCAACATCTGTTCAA
CGAGAGGGTGAAGCGCTGCAGGAATAGTGATTGTTACCAGAGGGGATGGA
GGCGAGGACGAGGACGAGGACGAAGACGAGGACGAGGACGAGGACAAGAA
AGGAACTGAGGAGAAAGCTTTGGTTTCTTCCTCCTCGCGCACCAGTGAGC
ATGGGATGCTTCCTGCCTTTGCCGACACGTCCATCTCATCCTCCTCGTAC
TTTTCCTCGTCATGAAGGTGGTAGTACTTCTGCTGTTGCTCTTGTTGCAT
CTCGGCAGCCGTTGGCACACACACTCCTCCCTCCATCTCGTCAGATGCGC
TCTCGCGCATAGACTCATCTTCCATCTTCTCCTGCGAGCCGCGCATCTTA
CACAACTCATCAGTCATGGCCCTCTCTTTACACTGCTCTTCCTTTTTCAC
TCCCTTTTCTTCCTCCTCCTCCTCCTCTTCTCTCCCCTCCTCATTCCCTG
GCTCATGCCCCCTAGGACAAAATGAGGGCGGACTTGCCGAAGCTCCTGTA
TCATCCTCATTATCTGCCTTTTTGCCCATACCCAACCCACATGCCGACGA
CGAAGCCACAATTTCTTTCTTCTGCTTGTCCACTACCTGCAATCGCTTCG
ACTCTAAGGGCAGGGGCGTTATAGCCGCTCCCTCCGTCCTTTCCTTCTCC
TCCGTCTCCCCTTCGTCCTGCTGTTTATTCCCCCCGGACGACACTCGAGC
CTCAATGACCGTAACAGTTACCTCCCCCATCACTTCCTCCCTCTCCTCTG
TGATGTGTACGGATTCTGAAGGGACAAGAACGACGGAGGGTTTGGCCTCC
TCCTTGGCCAACTCCTGCTGCCTCTGCTGCTGCTTGCTACGCTTTTCGGG
CGACTTGCGACGCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTG
CTGCTGCTGCTCCTGCTACGACTCAAGCTGCAACTTTCTCCATTCCCACC
ACCCATTTCTCCCTTCTTTTTCTGCTGCTGCTGCTGCGTCTGTGCTTTGC
CTCCCTTCGCTGCTGCCTCTGACCGAGCAGGCCAGAAGGATCCTGAAAAC
AACTTCTGCTCCTGCGCCGCTACTCCTGTGGCTGCACTTGCTCCTTGCTT
TCTCTTCCCTCCTCCTGCCGCTGCTGTCGCCAGGAAACATCTGGCCAAAC
GAACCCCACGCTGGCAAGTCGACAAAAAGACGGAAGGAAGGGAAACATTC
CACGCCTGAAACCGCTTGCTCAAGTGAAACACCGCTTGACGTGCCTTTTC
GTAACACGCTTTCCCTTTCTCACCTTTCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGACTACCCCGTCGAACAGCAGCAGCCGCAAACAAGGCTGCCCTC
TTCTTGTGGCGGATGGTGCGGGCTCGAGAGCGTTTGCGTGACCAGTAAAA
GAATACTCCTCCAATTAAGCAGAGCAAGACCGCACAAGAGGTAAAACCCG
AACACATAACATTCCCATCTCTACTGTTGCTGCTGCTCCGGCTGGAGGGT
GGGAAAGAGGTTGAGGAGGAGGGGGAGGATGAGGACTTGCGGTGGCTGTG
CATGCCCGGTAGTGCCTGATTCTGGGTCCCCGCGGGTGTTTCGTGCAAAG
GACGACGAGATGCAGCCAGTGCATGTTCCCGCACCTTCATGACAGCCAAA
AAAACCTTCCCTCGGGATCGCGACTCCGACATGCCTGTTCCTTCCTTATT
CACTTTGTCCCTACTCCTGTTGCTGCTCGAGCGACGCATTTCCGAGTCCA
ACGCCGCCCACCCTTGCCGAGAGACCTCGTCTATCAGCGCCAGATATCCC
CGTCCCTCCGCCAGTATCTCATCCACCATCTTGGTGGCCTCCGCAATCAC
ATCCCCTTCCTTGCCTCCTTCCTCCCTCCCTTTACTCTCTCTTGTCTTGG
CGTGTACCACGCGCTGCAGGGCCCGTTGCTCAACGACACGCAACCAGACC
TTGGCCTTCTCCAGATAGGATTGGGCGTCTGCTACTTTTGGCGATGATGT
CAATTGCCATACCAGGTCCAGAAGGAAAGCCCGCATGATCTGTGCTTCAT
TCCACGCTACAAAATTACTGCTGCTGCTATCGTCGTCTCGCCAAGCAGTG
GCAAGCGCATGAGGGGGGGAAGCAGACAAAAGAGCAATCTTGTCCACCAT
CGCCATCGCCCGCATCCGGAATGCAGCAGCCTCCTGCTGCTGTAATTCCC
ACACCCCGTAGCCCATCGGTATGTTCTGTGCTGGCAGGTCGGCCTCTTCC
CGTCGCTTGGCTGTGACATATCGGGCCAACAGGTCGCCCCCTCTCCCTGC
CTCGTGCTGCGGTTGTTGCTGCTGCTGTTGGACTTCAGCGTACAGATCCG
CCAGAGCTACGTAGCAAGGGTAGTAACTGACAGCTGCGGTCCCATGGTCA
AGGGCTGATGAATGCGAGTAAGAGGAGAAGGTGAGTGTCTCGGGGAGGCT
GTTAAGAGCTACCGCAGCTTCTGCCGATGAGGGACCAGATTGCTGAGATA
AACTGGGCTTTGTGGGGGGAATAGTGTGTAACGGAGCGAATGGCCCTGCT
GTTTGCAATGTATAAAACTCGGGGCAGAAAGTTTCCACATCTTCAACAGC
TCGAAGAATGAGGGGGCTCTGACCCTCGTCTCGGCCCCGCACGTCTGCCT
GATGATTGTCCCCTTGCTGCTTCTGCTGCCGTTCAGCCAATGACAAGGCC
TGTCTGTGTATGATCTGCGTATGCGTCATCAACAAAATACCATTGTCGTG
CAGCCCCGCCCGCCGCAACTGTTCCTCCACTCCTCGCCACTGGTGCAAGT
TACTTTCCAGAAGGTCCAAGGCCTGCTCCAGGGCTGCCGGATCAATCGCG
TCACTCACGTCGAGCAGCATACGGGCCTCGTTGTAGTGGCTCACCATATT
GTCAAAAGCGGCGTTGTCATGCTCGCCAATGTTATGGCGGCGCGAGGAGA
GGGCGGAAGGGTGAGCGACAACAGCTCCGTTTCCCCCGTCATCCGTTACT
CTGTCGCACCGACCCTCGCTTGACATGCCCTCTTGCACCGTCGGCCTGCT
GACATGAGCTAAGGATGCTCCGAACAGTAGTAGCAAGAGGGCGGCGGGGG
TGGGATGACGTGGGCTGGCCATGGCGGCGTGGTACGTGACCAAGTTGGGA
TCCAGCCCTGGCTTCGAGCCACCCGCTGCCTGGCTGGTTCTGCTTAGCCT
TGTTTGTCCAGTAAACACAACGGGGGCACGCCAACCTGCGAATTTGCGTG
TGTGAGCAACAACGGCGTCTGTGTGTGACTGGAGCTGCTGT

Coding sequence (CDS) from alignment at scaffold_22:201657..205347+

>mRNA_7931 ID=mRNA_7931|Name=jgi.p|Nanoce1779_2|600555|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_22:201657..205347+ (Nannochloropsis oceanica)
ATGGCCCTCTCTTTACACTGCTCTTCCTTTTTCACTCCCTTTTCTTCCTC
CTCCTCCTCCTCTTCTCTCCCCTCCTCATTCCCTGGCTCATGCCCCCTAG
GACAAAATGAGGGCGGACTTGCCGAAGCTCCTGTATCATCCTCATTATCT
GCCTTTTTGCCCATACCCAACCCACATGCCGACGACGAAGCCACAATTTC
TTTCTTCTGCTTGTCCACTACCTGCAATCGCTTCGACTCTAAGGGCAGGG
GCGTTATAGCCGCTCCCTCCGTCCTTTCCTTCTCCTCCGTCTCCCCTTCG
TCCTGCTGTTTATTCCCCCCGGACGACACTCGAGCCTCAATGACCGTAAC
AGTTACCTCCCCCATCACTTCCTCCCTCTCCTCTGTGATGTGTACGGATT
CTGAAGGGACAAGAACGACGGAGGGTTTGGCCTCCTCCTTGGCCAACTCC
TGCTGCCTCTGCTGCTGCTTGCTACGCTTTTCGGGCGACTTGCGACGCTT
GTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTCCTGCTACGAC
TCAAGCTGCAACTTTCTCCATTCCCACCACCCATTTCTCCCTTCTTTTTC
TGCTGCTGCTGCTGCGTCTGTGCTTTGCCTCCCTTCGCTGCTGCCTCTGA
CCGAGCAGGCCAGAAGGATCCTGAAAACAACTTCTGCTCCTGCGCCGCTA
CTCCTGTGGCTGCACTTGCTCCTTGCTTTCTCTTCCCTCCTCCTGCCGCT
GCTGTCGCCAGGAAACATCTGGCCAAACGAACCCCACGCTGGCAAGTCGA
CAAAAAGACGGAAGGAAGGGAAACATTCCACGCCTGAATGGCCCTCTCTT
TACACTGCTCTTCCTTTTTCACTCCCTTTTCTTCCTCCTCCTCCTCCTCT
TCTCTCCCCTCCTCATTCCCTGGCTCATGCCCCCTAGGACAAAATGAGGG
CGGACTTGCCGAAGCTCCTGTATCATCCTCATTATCTGCCTTTTTGCCCA
TACCCAACCCACATGCCGACGACGAAGCCACAATTTCTTTCTTCTGCTTG
TCCACTACCTGCAATCGCTTCGACTCTAAGGGCAGGGGCGTTATAGCCGC
TCCCTCCGTCCTTTCCTTCTCCTCCGTCTCCCCTTCGTCCTGCTGTTTAT
TCCCCCCGGACGACACTCGAGCCTCAATGACCGTAACAGTTACCTCCCCC
ATCACTTCCTCCCTCTCCTCTGTGATGTGTACGGATTCTGAAGGGACAAG
AACGACGGAGGGTTTGGCCTCCTCCTTGGCCAACTCCTGCTGCCTCTGCT
GCTGCTTGCTACGCTTTTCGGGCGACTTGCGACGCTTGTTGTTGTTGTTG
TTGTTGTTGTTGCTGCTGCTGCTGCTCCTGCTACGACTCAAGCTGCAACT
TTCTCCATTCCCACCACCCATTTCTCCCTTCTTTTTCTGCTGCTGCTGCT
GCGTCTGTGCTTTGCCTCCCTTCGCTGCTGCCTCTGACCGAGCAGGCCAG
AAGGATCCTGAAAACAACTTCTGCTCCTGCGCCGCTACTCCTGTGGCTGC
ACTTGCTCCTTGCTTTCTCTTCCCTCCTCCTGCCGCTGCTGTCGCCAGGA
AACATCTGGCCAAACGAACCCCACGCTGGCAAGTCGACAAAAAGACGGAA
GGAAGGGAAACATTCCACGCCTGA

Synonyms

Publications