jgi.p|Nanoce1779_2|176510, mRNA_7917 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|176510
Unique NamemRNA_7917
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length741
Alignment locationscaffold_22:165843..166583 -

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Properties
Property NameValue
TranscriptId176596
TrackFilteredModels2
ProteinId176510
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:165843..166583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|176510gene_7917Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|176510mRNA_7917-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7917CDS_7917Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7917 ID=mRNA_7917|Name=jgi.p|Nanoce1779_2|176510|organism=Nannochloropsis oceanica|type=mRNA|length=741bp
TTCACGGACAAGCTTCTCAATTTACACACACGAACGGGCTCCAAACCCAC
TGCATAGACCTACGCCCTCTATCAGAGTTTGATATCATCTAGCGTGAGAC
ACAAGGCCTTGTCGCATGACTGGTACCAATGCTTTTTTGATATTATGGTT
TACTTTCGCCCCATCCCCATACGTACACGCACGTCTTGTTCTTGGGGCTC
ACGCACCCACTGCACCACCCTTTCCTCTCCCACAACACATGGATACAGGT
AGGAAGACAAATGCCCTGGACCACCACCGGCAAGTGATCGTCCACCTTCA
TTACTTCCACCATGCGGGGGTAACAGCAGCAGCGGTTGGAAGCAGTCAAG
CAGCAGCAACATTCTGCGACCTCCCTCTGCTCCTTCCCTTCCCCCCGCGC
CTCCCCAACAGTCCATCGTCGAGCTCTGTGGGAAACACGTGGGGCGATGC
GGGTACTGCAAAACTAAGACCGCTAGGGGTAGGAGCCATACCAGTGTCTC
GTTTGGGTTGAGTGCCAAGCGTTTGTTGTGTGAGGATTATCAGGAATTGA
TCGATCTGGGGTGGCGGCGTTCAGGTAACTTTCTGTACCGGCCTGTCAAT
GCTGAGACTTGCTGTCCGTGCTATACGATTAGATTGGAAGTAGACGGTTT
CCATCCGTCGAAGTCCCAGAGGCAGTTGGCGGGAAAGATTCAGCGCTTGA
TAGACGGAAGGGCCGGAAAGAGAATAGGGGAAGGAGAGGGA
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protein sequence of jgi.p|Nanoce1779_2|176510

>mRNA_7917-protein ID=mRNA_7917-protein|Name=jgi.p|Nanoce1779_2|176510|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MTGTNAFLILWFTFAPSPYVHARLVLGAHAPTAPPFPLPQHMDTGRKTNA
LDHHRQVIVHLHYFHHAGVTAAAVGSSQAAATFCDLPLLLPFPPRLPNSP
SSSSVGNTWGDAGTAKLRPLGVGAIPVSRLG*
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mRNA from alignment at scaffold_22:165843..166583-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7917 ID=mRNA_7917|Name=jgi.p|Nanoce1779_2|176510|organism=Nannochloropsis oceanica|type=mRNA|length=741bp|location=Sequence derived from alignment at scaffold_22:165843..166583- (Nannochloropsis oceanica)
TTCACGGACAAGCTTCTCAATTTACACACACGAACGGGCTCCAAACCCAC
TGCATAGACCTACGCCCTCTATCAGAGTTTGATATCATCTAGCGTGAGAC
ACAAGGCCTTGTCGCATGACTGGTACCAATGCTTTTTTGATATTATGGTT
TACTTTCGCCCCATCCCCATACGTACACGCACGTCTTGTTCTTGGGGCTC
ACGCACCCACTGCACCACCCTTTCCTCTCCCACAACACATGGATACAGGT
AGGAAGACAAATGCCCTGGACCACCACCGGCAAGTGATCGTCCACCTTCA
TTACTTCCACCATGCGGGGGTAACAGCAGCAGCGGTTGGAAGCAGTCAAG
CAGCAGCAACATTCTGCGACCTCCCTCTGCTCCTTCCCTTCCCCCCGCGC
CTCCCCAACAGTCCATCGTCGAGCTCTGTGGGAAACACGTGGGGCGATGC
GGGTACTGCAAAACTAAGACCGCTAGGGGTAGGAGCCATACCAGTGTCTC
GTTTGGGTTGAGTGCCAAGCGTTTGTTGTGTGAGGATTATCAGGAATTGA
TCGATCTGGGGTGGCGGCGTTCAGGTAACTTTCTGTACCGGCCTGTCAAT
GCTGAGACTTGCTGTCCGTGCTATACGATTAGATTGGAAGTAGACGGTTT
CCATCCGTCGAAGTCCCAGAGGCAGTTGGCGGGAAAGATTCAGCGCTTGA
TAGACGGAAGGGCCGGAAAGAGAATAGGGGAAGGAGAGGGA
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Coding sequence (CDS) from alignment at scaffold_22:165843..166583-

>mRNA_7917 ID=mRNA_7917|Name=jgi.p|Nanoce1779_2|176510|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_22:165843..166583- (Nannochloropsis oceanica)
ATGACTGGTACCAATGCTTTTTTGATATTATGGTTTACTTTCGCCCCATC
CCCATACGTACACGCACGTCTTGTTCTTGGGGCTCACGCACCCACTGCAC
CACCCTTTCCTCTCCCACAACACATGGATACAGGTAGGAAGACAAATGCC
CTGGACCACCACCGGCAAGTGATCGTCCACCTTCATTACTTCCACCATGC
GGGGGTAACAGCAGCAGCGGTTGGAAGCAGTCAAGCAGCAGCAACATTCT
GCGACCTCCCTCTGCTCCTTCCCTTCCCCCCGCGCCTCCCCAACAGTCCA
TCGTCGAGCTCTGTGGGAAACACGTGGGGCGATGCGGGTACTGCAAAACT
AAGACCGCTAGGGGTAGGAGCCATACCAGTGTCTCGTTTGGGTTGA
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Synonyms
Publications