jgi.p|Nanoce1779_2|600467, mRNA_7905 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600467
Unique Name	mRNA_7905
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1076
Alignment location	scaffold_22:131388..132871 +

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Properties


Property Name	Value
TranscriptId	600553
Track	FilteredModels2
ProteinId	600467

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:131388..132871 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600467	gene_7905	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600467	mRNA_7905-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7905	CDS_7905	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:131388..132871+
coding sequence from alignment at scaffold_22:131388..132871+

mRNA sequence

>mRNA_7905 ID=mRNA_7905|Name=jgi.p|Nanoce1779_2|600467|organism=Nannochloropsis oceanica|type=mRNA|length=1076bp
ACAAAAGCAATTGCAGCTGTGGTAGTCCCAGCCCAAGTGAAGCGCGCTGT
ATCATGCCCAAAAGCAAGGGTCCCGATAAGGTGGTGGATTTTAAGACCTT
TGGGGATCGCCCCGCCCGTGGCCGGTCAACTGCTTTATACATTGGTTCCA
AGGTCGATGCGAGAAATGAGACCGGGCTGAGGGAGAGGGGGATCACTCAC
ATTCTCAATTGCACTCCACCACGCAGCCTGGACCCGGAAAGCGGCTGCCC
AAATTTCTTTGAAAGTACAAGCAAAAGCCTCACGTACAAGCGAATCCCCA
TTTTCGATAATCGAGGAGAGGATATTCTGTCGTACATGCCGGGGGCGATA
GCTTTCATTGAGCAGGCCAAGCATTATGGGAGCGTGCTTGTACGTTAAAA
AATGATTTATTTATTGATTTTTTTATTCGTTGTTTCCTCCCCTTTGGAAT
GTATATATATACCTCCCATCCTGTCTTACCCACTTCCCGTCCTGTAGGTG
CACTGCAACAAGGGAGTCAGCCGCTCCGCTTCGTTCGTGCTGGGGTACTT
GATGCAGACAGGTGGTCTCTCCCTCCCTTCCTCGTCCTCCCTCCTTCGTT
CTAAGAGAAAGATCTGTCAGCCCAATGATTCATTTATGGAACAATTGAAG
AAATTCGATGAGGAGGTGAAGGAGAGAAGGAGGGACGAGGAGGGGAGGCA
GGCCAAGCACGGGACAAGAGATACACAGAAAAAAGAAGGAGGAGAAGGAG
GGGAAGAAGGAGGACGTGTGATTAAAGCTCCGTTGGTTGGTAAAGCTCCG
TTGGTTGGTCCTGTGCGATGTCCGGGAGGAGGAGGAGGAGGAAAAAAAGG
AGAAGGAGGAGGAGAAGGAGGAAGGGAGGGAGGACGGATTGGCCCATCGA
TGCCTCGACATTTGATACAGCAGCAGCAACAGCAGCAACAAGAAGTCATG
GAAGGAGACACGGAGGGAAACGAGGGGAGGGGGGTTAAAGGAGGGTCGTC
GTTGAAAAGAAAGCATGAGCATGCCATCGGTCCTTCCCGCACGCCTTCCT
CTTCCTCCTTTTCTAACTCCTCCTCC

protein sequence of jgi.p|Nanoce1779_2|600467

>mRNA_7905-protein ID=mRNA_7905-protein|Name=jgi.p|Nanoce1779_2|600467|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MPKSKGPDKVVDFKTFGDRPARGRSTALYIGSKVDARNETGLRERGITHI
LNCTPPRSLDPESGCPNFFESTSKSLTYKRIPIFDNRGEDILSYMPGAIA
FIEQAKHYGSVLVR*

mRNA from alignment at scaffold_22:131388..132871+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7905 ID=mRNA_7905|Name=jgi.p|Nanoce1779_2|600467|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp|location=Sequence derived from alignment at scaffold_22:131388..132871+ (Nannochloropsis oceanica)
ACAAAAGCAATTGCAGCTGTGGTAGTCCCAGCCCAAGTGAAGCGCGCTGT
ATCATGCCCAAAAGCAAGGGTCCCGATAAGGTAAGCAGTAAGAAGGACCC
CAACTTTTCCTTTCCCCTCCTTCCGATGACTCTCTTGCGAGTAGGAGGAT
CAGCAGTGCTTCTGTCACTCCCAGTCTATCATGGTCTATCATCCGCACGA
TAGACTTTTATCTTATCGTAGTCGTGTTGCTCGACCTCAAATCTCATTCC
TCTCCTCCTCACCTCTCCCGCTTCCTTCCCTACTTCCCCTCCCCATACTC
CGTGGTTTGGCGCACGCCCCTCCACCGTCCGCTCTTTTTTATTGACGGGT
GTAGGTGGTGGATTTTAAGACCTTTGGGGATCGCCCCGCCCGTGGCCGGT
CAACTGCTTTATACATTGGTTCCAAGGTCGATGCGAGAAATGAGACCGGG
CTGAGGGAGAGGGGGATCACTCACATTCTCAATTGCACTCCACCACGCAG
GTACGACGAAAGGACAGGGAAGAAGGATTAAGGAGGGAGAATGGGGCAAA
TTATTGCATAAGGATTTCTCCATCGTGTTTCTTGTCATGCTTCCTCATCC
TCCCCCTTCCTGCCTTCTTTCCTCCCTCCCTCAGCCTGGACCCGGAAAGC
GGCTGCCCAAATTTCTTTGAAAGTACAAGCAAAAGCCTCACGTACAAGCG
AATCCCCATTTTCGATAATCGAGGAGAGGATATTCTGTCGTACATGCCGG
GGGCGATAGCTTTCATTGAGCAGGCCAAGCATTATGGGAGCGTGCTTGTA
CGTTAAAAAATGATTTATTTATTGATTTTTTTATTCGTTGTTTCCTCCCC
TTTGGAATGTATATATATACCTCCCATCCTGTCTTACCCACTTCCCGTCC
TGTAGGTGCACTGCAACAAGGGAGTCAGCCGCTCCGCTTCGTTCGTGCTG
GGGTACTTGATGCAGACAGGTGGTCTCTCCCTCCCTTCCTCGTCCTCCCT
CCTTCGTTCTAAGAGAAAGATCTGTCAGCCCAATGATTCATTTATGGAAC
AATTGAAGAAATTCGATGAGGAGGTGAAGGAGAGAAGGAGGGACGAGGAG
GGGAGGCAGGCCAAGCACGGGACAAGAGATACACAGAAAAAAGAAGGAGG
AGAAGGAGGGGAAGAAGGAGGACGTGTGATTAAAGCTCCGTTGGTTGGTA
AAGCTCCGTTGGTTGGTCCTGTGCGATGTCCGGGAGGAGGAGGAGGAGGA
AAAAAAGGAGAAGGAGGAGGAGAAGGAGGAAGGGAGGGAGGACGGATTGG
CCCATCGATGCCTCGACATTTGATACAGCAGCAGCAACAGCAGCAACAAG
AAGTCATGGAAGGAGACACGGAGGGAAACGAGGGGAGGGGGGTTAAAGGA
GGGTCGTCGTTGAAAAGAAAGCATGAGCATGCCATCGGTCCTTCCCGCAC
GCCTTCCTCTTCCTCCTTTTCTAACTCCTCCTCC

Coding sequence (CDS) from alignment at scaffold_22:131388..132871+

>mRNA_7905 ID=mRNA_7905|Name=jgi.p|Nanoce1779_2|600467|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at scaffold_22:131388..132871+ (Nannochloropsis oceanica)
ATGCCCAAAAGCAAGGGTCCCGATAAGGTGGTGGATTTTAAGACCTTTGG
GGATCGCCCCGCCCGTGGCCGGTCAACTGCTTTATACATTGGTTCCAAGG
TCGATGCGAGAAATGAGACCGGGCTGAGGGAGAGGGGGATCACTCACATT
CTCAATTGCACTCCACCACGCAGCCTGGACCCGGAAAGCGGCTGCCCAAA
TTTCTTTGAAAGTACAAGCAAAAGCCTCACGTACAAGCGAATCCCCATTT
TCGATAATCGAGGAGAGGATATTCTGTCGTACATGCCGGGGGCGATAGCT
TTCATTGAGCAGGCCAAGCATTATGGGAGCGTGCTTGTACGTTAAATGCC
CAAAAGCAAGGGTCCCGATAAGGTGGTGGATTTTAAGACCTTTGGGGATC
GCCCCGCCCGTGGCCGGTCAACTGCTTTATACATTGGTTCCAAGGTCGAT
GCGAGAAATGAGACCGGGCTGAGGGAGAGGGGGATCACTCACATTCTCAA
TTGCACTCCACCACGCAGCCTGGACCCGGAAAGCGGCTGCCCAAATTTCT
TTGAAAGTACAAGCAAAAGCCTCACGTACAAGCGAATCCCCATTTTCGAT
AATCGAGGAGAGGATATTCTGTCGTACATGCCGGGGGCGATAGCTTTCAT
TGAGCAGGCCAAGCATTATGGGAGCGTGCTTGTACGTTAAATGCCCAAAA
GCAAGGGTCCCGATAAGGTGGTGGATTTTAAGACCTTTGGGGATCGCCCC
GCCCGTGGCCGGTCAACTGCTTTATACATTGGTTCCAAGGTCGATGCGAG
AAATGAGACCGGGCTGAGGGAGAGGGGGATCACTCACATTCTCAATTGCA
CTCCACCACGCAGCCTGGACCCGGAAAGCGGCTGCCCAAATTTCTTTGAA
AGTACAAGCAAAAGCCTCACGTACAAGCGAATCCCCATTTTCGATAATCG
AGGAGAGGATATTCTGTCGTACATGCCGGGGGCGATAGCTTTCATTGAGC
AGGCCAAGCATTATGGGAGCGTGCTTGTACGTTAA

Synonyms

Publications