jgi.p|Nanoce1779_2|559105, mRNA_7888 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|559105
Unique NamemRNA_7888
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1480
Alignment locationscaffold_22:91869..93348 -

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Properties
Property NameValue
TranscriptId559191
TrackFilteredModels2
ProteinId559105
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:91869..93348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559105gene_7888Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559105mRNA_7888-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7888CDS_7888Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7888 ID=mRNA_7888|Name=jgi.p|Nanoce1779_2|559105|organism=Nannochloropsis oceanica|type=mRNA|length=1480bp
AAACACTACAGGCAAATGCCGCCATTGTCCTTCTCGCCCATTTCTCTGCT
CGTCATTTTCAGCACCATGCTCGTCCTCCAGCTCACCACCGCCTTTGCCT
TCCGCACACCCTCCCCCACCTTCCCCTCCCTCTCCCGCCTCCAGCTCCAC
CAGCGACAGAGGCAAACCTTCCGTGCCCTCGCCTCCTCGTCCTCGTCCTT
GCCCCTCTCGTCCTCCAAAAAAGTAGGCTTTATTGGCTTAGGATACATGG
GCGCGGGGATGGTCCGTCGCCTCCTGGAAAAAGGAGACGATGTCATAGTC
TGGAATCGAAGCGTGGAGAAAAGCGAGAAACTTTTGTCAGAATACCCCCC
TACGACCGACCGTATACGCGTCCGCATCGCAAAAAATCCCAAACAAGTTC
TTGAAGAGGTTGGAGAGGGGTTGACATTCTCGATGCTTTCGACTCCTGCA
GCGGCAAGGGAGGTCTTTGACGCCCCTGAAGGTATTCTTGCAGGGATCCA
AAAAGGGTCTAAACTAATAGATTGTGCCACGTTGGAAGTCAAGGACATGC
AGGCATTCGACATTGCCGTCAAAGCCAAGGGCGGGAGTTTTCTAGAGGCG
CCCGTGAGTGGGAGTAAGGTACCGGCAGAAACGGGCCAGTTGGTGTTTTT
GACGGGAGGGAATGAGGGAGTGTTTAAAGAAGCCGTGCCTTATTTAGATG
CTATGGGGAAAGCAAGTTTCTTCCTGGGCGATACCGGAAAAGGGACTGAG
ATGAAACTGGTCGTTAACATGATAATGGCTACGATGATGTCCTCCCTCTC
CGAAGGCCTTGCCCTGGCTCAAAAAGCGAATTTGTCCACAGAGGATGTGG
TAAAGGTCCTGTCGCTTGGCGCGATGACCAATCCCATGTTCAACCTCAAG
GGTCCTAAGATCATAGCGGACGACCACGAGGTCAATTTCCCCTTGAAACA
TGCGCAGAAAGATTTGGCGTTTGCCTTGACGCTTGCTGAGAAAGTGGGGG
CGTCGGTGCCAACAGCTGCGGCGGCGAACAGGGACTACGTGACGGCGTTG
GAGCAGGGGGAGGGCGAGAAGGATTTCTCGGCTGTGGCACGGGTAGTCAT
GAAATAATCTTAAAATAATTGATCGATAAGATAAATGATTGATGAAATTA
TCGGTATTTAATTGAAAAGAAGAAAAAAGACCGGAAAGGACGCATAATTT
GTTTTTTTCTTGGGAGGAGGGGGAGGGATTGGGAGCAAACGTGTGGGCGG
AGGAAAGGTCGCAGCCCGGCAGCTGCGGCGACAAATAAAGGGCATGTGGT
TGCCCCGGAGCTGACAAGGGGTAGCTAGGTGAGGGAGCGAACCGAAAAGG
ACATGGAGGACACGGCTATAATGGAAATGGTGATGAAGGGGTAATGGTTG
ATAAGAGGGAAATGGAGAGAAAATACATGTTTTAAAAAAAAGAAACGCAT
TTCACTGTGTACCTAGAGTTGGCTGGACGC
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protein sequence of jgi.p|Nanoce1779_2|559105

>mRNA_7888-protein ID=mRNA_7888-protein|Name=jgi.p|Nanoce1779_2|559105|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MPPLSFSPISLLVIFSTMLVLQLTTAFAFRTPSPTFPSLSRLQLHQRQRQ
TFRALASSSSSLPLSSSKKVGFIGLGYMGAGMVRRLLEKGDDVIVWNRSV
EKSEKLLSEYPPTTDRIRVRIAKNPKQVLEEVGEGLTFSMLSTPAAAREV
FDAPEGILAGIQKGSKLIDCATLEVKDMQAFDIAVKAKGGSFLEAPVSGS
KVPAETGQLVFLTGGNEGVFKEAVPYLDAMGKASFFLGDTGKGTEMKLVV
NMIMATMMSSLSEGLALAQKANLSTEDVVKVLSLGAMTNPMFNLKGPKII
ADDHEVNFPLKHAQKDLAFALTLAEKVGASVPTAAAANRDYVTALEQGEG
EKDFSAVARVVMK*
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mRNA from alignment at scaffold_22:91869..93348-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7888 ID=mRNA_7888|Name=jgi.p|Nanoce1779_2|559105|organism=Nannochloropsis oceanica|type=mRNA|length=1480bp|location=Sequence derived from alignment at scaffold_22:91869..93348- (Nannochloropsis oceanica)
AAACACTACAGGCAAATGCCGCCATTGTCCTTCTCGCCCATTTCTCTGCT
CGTCATTTTCAGCACCATGCTCGTCCTCCAGCTCACCACCGCCTTTGCCT
TCCGCACACCCTCCCCCACCTTCCCCTCCCTCTCCCGCCTCCAGCTCCAC
CAGCGACAGAGGCAAACCTTCCGTGCCCTCGCCTCCTCGTCCTCGTCCTT
GCCCCTCTCGTCCTCCAAAAAAGTAGGCTTTATTGGCTTAGGATACATGG
GCGCGGGGATGGTCCGTCGCCTCCTGGAAAAAGGAGACGATGTCATAGTC
TGGAATCGAAGCGTGGAGAAAAGCGAGAAACTTTTGTCAGAATACCCCCC
TACGACCGACCGTATACGCGTCCGCATCGCAAAAAATCCCAAACAAGTTC
TTGAAGAGGTTGGAGAGGGGTTGACATTCTCGATGCTTTCGACTCCTGCA
GCGGCAAGGGAGGTCTTTGACGCCCCTGAAGGTATTCTTGCAGGGATCCA
AAAAGGGTCTAAACTAATAGATTGTGCCACGTTGGAAGTCAAGGACATGC
AGGCATTCGACATTGCCGTCAAAGCCAAGGGCGGGAGTTTTCTAGAGGCG
CCCGTGAGTGGGAGTAAGGTACCGGCAGAAACGGGCCAGTTGGTGTTTTT
GACGGGAGGGAATGAGGGAGTGTTTAAAGAAGCCGTGCCTTATTTAGATG
CTATGGGGAAAGCAAGTTTCTTCCTGGGCGATACCGGAAAAGGGACTGAG
ATGAAACTGGTCGTTAACATGATAATGGCTACGATGATGTCCTCCCTCTC
CGAAGGCCTTGCCCTGGCTCAAAAAGCGAATTTGTCCACAGAGGATGTGG
TAAAGGTCCTGTCGCTTGGCGCGATGACCAATCCCATGTTCAACCTCAAG
GGTCCTAAGATCATAGCGGACGACCACGAGGTCAATTTCCCCTTGAAACA
TGCGCAGAAAGATTTGGCGTTTGCCTTGACGCTTGCTGAGAAAGTGGGGG
CGTCGGTGCCAACAGCTGCGGCGGCGAACAGGGACTACGTGACGGCGTTG
GAGCAGGGGGAGGGCGAGAAGGATTTCTCGGCTGTGGCACGGGTAGTCAT
GAAATAATCTTAAAATAATTGATCGATAAGATAAATGATTGATGAAATTA
TCGGTATTTAATTGAAAAGAAGAAAAAAGACCGGAAAGGACGCATAATTT
GTTTTTTTCTTGGGAGGAGGGGGAGGGATTGGGAGCAAACGTGTGGGCGG
AGGAAAGGTCGCAGCCCGGCAGCTGCGGCGACAAATAAAGGGCATGTGGT
TGCCCCGGAGCTGACAAGGGGTAGCTAGGTGAGGGAGCGAACCGAAAAGG
ACATGGAGGACACGGCTATAATGGAAATGGTGATGAAGGGGTAATGGTTG
ATAAGAGGGAAATGGAGAGAAAATACATGTTTTAAAAAAAAGAAACGCAT
TTCACTGTGTACCTAGAGTTGGCTGGACGC
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Coding sequence (CDS) from alignment at scaffold_22:91869..93348-

>mRNA_7888 ID=mRNA_7888|Name=jgi.p|Nanoce1779_2|559105|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at scaffold_22:91869..93348- (Nannochloropsis oceanica)
ATGCCGCCATTGTCCTTCTCGCCCATTTCTCTGCTCGTCATTTTCAGCAC
CATGCTCGTCCTCCAGCTCACCACCGCCTTTGCCTTCCGCACACCCTCCC
CCACCTTCCCCTCCCTCTCCCGCCTCCAGCTCCACCAGCGACAGAGGCAA
ACCTTCCGTGCCCTCGCCTCCTCGTCCTCGTCCTTGCCCCTCTCGTCCTC
CAAAAAAGTAGGCTTTATTGGCTTAGGATACATGGGCGCGGGGATGGTCC
GTCGCCTCCTGGAAAAAGGAGACGATGTCATAGTCTGGAATCGAAGCGTG
GAGAAAAGCGAGAAACTTTTGTCAGAATACCCCCCTACGACCGACCGTAT
ACGCGTCCGCATCGCAAAAAATCCCAAACAAGTTCTTGAAGAGGTTGGAG
AGGGGTTGACATTCTCGATGCTTTCGACTCCTGCAGCGGCAAGGGAGGTC
TTTGACGCCCCTGAAGGTATTCTTGCAGGGATCCAAAAAGGGTCTAAACT
AATAGATTGTGCCACGTTGGAAGTCAAGGACATGCAGGCATTCGACATTG
CCGTCAAAGCCAAGGGCGGGAGTTTTCTAGAGGCGCCCGTGAGTGGGAGT
AAGGTACCGGCAGAAACGGGCCAGTTGGTGTTTTTGACGGGAGGGAATGA
GGGAGTGTTTAAAGAAGCCGTGCCTTATTTAGATGCTATGGGGAAAGCAA
GTTTCTTCCTGGGCGATACCGGAAAAGGGACTGAGATGAAACTGGTCGTT
AACATGATAATGGCTACGATGATGTCCTCCCTCTCCGAAGGCCTTGCCCT
GGCTCAAAAAGCGAATTTGTCCACAGAGGATGTGGTAAAGGTCCTGTCGC
TTGGCGCGATGACCAATCCCATGTTCAACCTCAAGGGTCCTAAGATCATA
GCGGACGACCACGAGGTCAATTTCCCCTTGAAACATGCGCAGAAAGATTT
GGCGTTTGCCTTGACGCTTGCTGAGAAAGTGGGGGCGTCGGTGCCAACAG
CTGCGGCGGCGAACAGGGACTACGTGACGGCGTTGGAGCAGGGGGAGGGC
GAGAAGGATTTCTCGGCTGTGGCACGGGTAGTCATGAAATAA
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Synonyms
Publications