jgi.p|Nanoce1779_2|600341, mRNA_7876 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600341
Unique NamemRNA_7876
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1758
Alignment locationscaffold_22:48767..50524 -

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Properties
Property NameValue
TranscriptId600427
TrackFilteredModels2
ProteinId600341
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:48767..50524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600341gene_7876Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600341mRNA_7876-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7876CDS_7876Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7876 ID=mRNA_7876|Name=jgi.p|Nanoce1779_2|600341|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp
ATGAAGGAGGAGGGATGTAAGGCCTTATGCGAGGCGTTGAAACGACACGG
GGAAGCAGGAAGGGAGGGAAGGAGCGAGGGAGGGAGTAGATTGAGACGGT
TGGGGTTGGGAGGACACTTGATAGGCGTAGAGGGTGTGAGGATGGTAGTG
GAGGTACTGAAGGAGGGAGGGATGCCGCGGTTGGAAGAGCTGGATCTAAC
GGGGAATGGATTAGGGGACGAAGGGGCAGTGGTGGTGGCAGAATGGCTGT
GGGAGGGAGGGAAGGAGGAGTGTGCTCGGGTGGATAAGGAGAAAGGAGAG
AGGAGGGGGGACACGTCTGGTTTTCCTTCTTCCCTGATTCCTTACTCCTC
CGGTCCCTCCCTCAAACGGCTCTTCCTTGGTCACAACAACATATATGGCC
ATCTCTTCCATTCCCATCACCTTTTCTGTCACCCCCTCCCTCCCTCGCAT
CCTCCCTCCTGCTCCTCTCTCATCGATCTCAACCTTGAAGGTAACTTCCT
CTCCTCGTCCTACTCATCCTCATCCTTCGTCTCCTCCGACGAGGAAGGAG
GGTTAGAGGGCAGGGAGTGTCAGTCTTCCGTCTCCTCCTTTCCCTCCACC
TCTTCCTCCTTCTCCTCCTCCTATTGTGACGAGAAGGAAGGATGGATTGA
ACAAGGTTATGATCTGAACCCCTGCCTGCGAGCCTTCATCGGTCCCTTCC
TTCGGCATCTCTCCCTCGCGTACAACCCTGCTGTTGCTGCAACCGCAACA
GCAGCAGCAGCGCTTGGCCGCCTTCTGAACGATTATCCCCTTCTTGAAAG
CGCCAATGTCACTGGATGTGGACGAGGGGAAGAAGGGAAGGAAGGAGGGA
TGGAGGTCGGGGTGATGCTGGAGGAGATCAAGAGGCCTTTGGCACTGACA
GCACTGTTGGCGAGGGATTGCGGGTTGTCCCCGCCCTCACTCGCTTCCCT
GCTCTCGCCCGGGAGTAGTGCCAAGTTCCCTAGGCTTGCGACGTTGGAGG
TTGATGGGGAGGGAGAGAAGGTGTGTTCAGAGATGCTGTCTGTGCTGCTG
GAGTGTTTGGAGGGAGGGAAGGAGGAAGGGAGGAGTAGGGCGTTGCCGGG
GCTGACAGCATTGACTTTCCCTTGTTTGAATGTGGGAGATGAGGAGGCTT
GGAGGCAAAGCGAGAAAGCAAGGAAAATTGAGAGGGCAAGACCCTGGTTG
AAAGCCTTCATATCTTGGCCGGTCGAGGAGAGAGTCGGGAAGGAAGAGGA
GGAAGGAGACAGGGAGTAGAATATGATGGAGGAGTAGAAGAAGGAAGAGA
AGGGGATGGGGGAAGATGAAAGTATGAGATCAGATATGGAAATGACTAGG
CTGAGAGGGACGGAGAGATGCAGGAAAAGAGTCACCAAGAAATAAAAGTG
ATGATGATTTTGTGGGATGAATTAGGTTGTGAAAAGTTATCTTTTTCACA
CAGGGTTAGGGCATGTGGACATGGCGATGACGAGATAAATATAGGCCGTG
GTGTCCTTCAGCTCCACATCCGTGGGGCATCATTTCCAGTTGCTACCACC
AAAATGGCAGGAAATTGCAGGTAGAAATTGGTCCTTCTTGGACAAGGACA
TGTGGTATTCAACACCCCCCCCCCAAATAGAGAAAGGAGAAGACATTATT
GGAAAATCGTGTGCCTTGACTAGTAATAGTACGCTTTTTTGCTCGTCTTC
CTTTAACCAATTGATTGAGTGATTGATTTTTTGATTCATTTGTGAGATCG
TTTTTGAC
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protein sequence of jgi.p|Nanoce1779_2|600341

>mRNA_7876-protein ID=mRNA_7876-protein|Name=jgi.p|Nanoce1779_2|600341|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MKEEGCKALCEALKRHGEAGREGRSEGGSRLRRLGLGGHLIGVEGVRMVV
EVLKEGGMPRLEELDLTGNGLGDEGAVVVAEWLWEGGKEECARVDKEKGE
RRGDTSGFPSSLIPYSSGPSLKRLFLGHNNIYGHLFHSHHLFCHPLPPSH
PPSCSSLIDLNLEGNFLSSSYSSSSFVSSDEEGGLEGRECQSSVSSFPST
SSSFSSSYCDEKEGWIEQGYDLNPCLRAFIGPFLRHLSLAYNPAVAATAT
AAAALGRLLNDYPLLESANVTGCGRGEEGKEGGMEVGVMLEEIKRPLALT
ALLARDCGLSPPSLASLLSPGSSAKFPRLATLEVDGEGEKVCSEMLSVLL
ECLEGGKEEGRSRALPGLTALTFPCLNVGDEEAWRQSEKARKIERARPWL
KAFISWPVEERVGKEEEEGDRE*
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mRNA from alignment at scaffold_22:48767..50524-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7876 ID=mRNA_7876|Name=jgi.p|Nanoce1779_2|600341|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp|location=Sequence derived from alignment at scaffold_22:48767..50524- (Nannochloropsis oceanica)
ATGAAGGAGGAGGGATGTAAGGCCTTATGCGAGGCGTTGAAACGACACGG
GGAAGCAGGAAGGGAGGGAAGGAGCGAGGGAGGGAGTAGATTGAGACGGT
TGGGGTTGGGAGGACACTTGATAGGCGTAGAGGGTGTGAGGATGGTAGTG
GAGGTACTGAAGGAGGGAGGGATGCCGCGGTTGGAAGAGCTGGATCTAAC
GGGGAATGGATTAGGGGACGAAGGGGCAGTGGTGGTGGCAGAATGGCTGT
GGGAGGGAGGGAAGGAGGAGTGTGCTCGGGTGGATAAGGAGAAAGGAGAG
AGGAGGGGGGACACGTCTGGTTTTCCTTCTTCCCTGATTCCTTACTCCTC
CGGTCCCTCCCTCAAACGGCTCTTCCTTGGTCACAACAACATATATGGCC
ATCTCTTCCATTCCCATCACCTTTTCTGTCACCCCCTCCCTCCCTCGCAT
CCTCCCTCCTGCTCCTCTCTCATCGATCTCAACCTTGAAGGTAACTTCCT
CTCCTCGTCCTACTCATCCTCATCCTTCGTCTCCTCCGACGAGGAAGGAG
GGTTAGAGGGCAGGGAGTGTCAGTCTTCCGTCTCCTCCTTTCCCTCCACC
TCTTCCTCCTTCTCCTCCTCCTATTGTGACGAGAAGGAAGGATGGATTGA
ACAAGGTTATGATCTGAACCCCTGCCTGCGAGCCTTCATCGGTCCCTTCC
TTCGGCATCTCTCCCTCGCGTACAACCCTGCTGTTGCTGCAACCGCAACA
GCAGCAGCAGCGCTTGGCCGCCTTCTGAACGATTATCCCCTTCTTGAAAG
CGCCAATGTCACTGGATGTGGACGAGGGGAAGAAGGGAAGGAAGGAGGGA
TGGAGGTCGGGGTGATGCTGGAGGAGATCAAGAGGCCTTTGGCACTGACA
GCACTGTTGGCGAGGGATTGCGGGTTGTCCCCGCCCTCACTCGCTTCCCT
GCTCTCGCCCGGGAGTAGTGCCAAGTTCCCTAGGCTTGCGACGTTGGAGG
TTGATGGGGAGGGAGAGAAGGTGTGTTCAGAGATGCTGTCTGTGCTGCTG
GAGTGTTTGGAGGGAGGGAAGGAGGAAGGGAGGAGTAGGGCGTTGCCGGG
GCTGACAGCATTGACTTTCCCTTGTTTGAATGTGGGAGATGAGGAGGCTT
GGAGGCAAAGCGAGAAAGCAAGGAAAATTGAGAGGGCAAGACCCTGGTTG
AAAGCCTTCATATCTTGGCCGGTCGAGGAGAGAGTCGGGAAGGAAGAGGA
GGAAGGAGACAGGGAGTAGAATATGATGGAGGAGTAGAAGAAGGAAGAGA
AGGGGATGGGGGAAGATGAAAGTATGAGATCAGATATGGAAATGACTAGG
CTGAGAGGGACGGAGAGATGCAGGAAAAGAGTCACCAAGAAATAAAAGTG
ATGATGATTTTGTGGGATGAATTAGGTTGTGAAAAGTTATCTTTTTCACA
CAGGGTTAGGGCATGTGGACATGGCGATGACGAGATAAATATAGGCCGTG
GTGTCCTTCAGCTCCACATCCGTGGGGCATCATTTCCAGTTGCTACCACC
AAAATGGCAGGAAATTGCAGGTAGAAATTGGTCCTTCTTGGACAAGGACA
TGTGGTATTCAACACCCCCCCCCCAAATAGAGAAAGGAGAAGACATTATT
GGAAAATCGTGTGCCTTGACTAGTAATAGTACGCTTTTTTGCTCGTCTTC
CTTTAACCAATTGATTGAGTGATTGATTTTTTGATTCATTTGTGAGATCG
TTTTTGAC
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Coding sequence (CDS) from alignment at scaffold_22:48767..50524-

>mRNA_7876 ID=mRNA_7876|Name=jgi.p|Nanoce1779_2|600341|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at scaffold_22:48767..50524- (Nannochloropsis oceanica)
ATGAAGGAGGAGGGATGTAAGGCCTTATGCGAGGCGTTGAAACGACACGG
GGAAGCAGGAAGGGAGGGAAGGAGCGAGGGAGGGAGTAGATTGAGACGGT
TGGGGTTGGGAGGACACTTGATAGGCGTAGAGGGTGTGAGGATGGTAGTG
GAGGTACTGAAGGAGGGAGGGATGCCGCGGTTGGAAGAGCTGGATCTAAC
GGGGAATGGATTAGGGGACGAAGGGGCAGTGGTGGTGGCAGAATGGCTGT
GGGAGGGAGGGAAGGAGGAGTGTGCTCGGGTGGATAAGGAGAAAGGAGAG
AGGAGGGGGGACACGTCTGGTTTTCCTTCTTCCCTGATTCCTTACTCCTC
CGGTCCCTCCCTCAAACGGCTCTTCCTTGGTCACAACAACATATATGGCC
ATCTCTTCCATTCCCATCACCTTTTCTGTCACCCCCTCCCTCCCTCGCAT
CCTCCCTCCTGCTCCTCTCTCATCGATCTCAACCTTGAAGGTAACTTCCT
CTCCTCGTCCTACTCATCCTCATCCTTCGTCTCCTCCGACGAGGAAGGAG
GGTTAGAGGGCAGGGAGTGTCAGTCTTCCGTCTCCTCCTTTCCCTCCACC
TCTTCCTCCTTCTCCTCCTCCTATTGTGACGAGAAGGAAGGATGGATTGA
ACAAGGTTATGATCTGAACCCCTGCCTGCGAGCCTTCATCGGTCCCTTCC
TTCGGCATCTCTCCCTCGCGTACAACCCTGCTGTTGCTGCAACCGCAACA
GCAGCAGCAGCGCTTGGCCGCCTTCTGAACGATTATCCCCTTCTTGAAAG
CGCCAATGTCACTGGATGTGGACGAGGGGAAGAAGGGAAGGAAGGAGGGA
TGGAGGTCGGGGTGATGCTGGAGGAGATCAAGAGGCCTTTGGCACTGACA
GCACTGTTGGCGAGGGATTGCGGGTTGTCCCCGCCCTCACTCGCTTCCCT
GCTCTCGCCCGGGAGTAGTGCCAAGTTCCCTAGGCTTGCGACGTTGGAGG
TTGATGGGGAGGGAGAGAAGGTGTGTTCAGAGATGCTGTCTGTGCTGCTG
GAGTGTTTGGAGGGAGGGAAGGAGGAAGGGAGGAGTAGGGCGTTGCCGGG
GCTGACAGCATTGACTTTCCCTTGTTTGAATGTGGGAGATGAGGAGGCTT
GGAGGCAAAGCGAGAAAGCAAGGAAAATTGAGAGGGCAAGACCCTGGTTG
AAAGCCTTCATATCTTGGCCGGTCGAGGAGAGAGTCGGGAAGGAAGAGGA
GGAAGGAGACAGGGAGTAG
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Synonyms
Publications