jgi.p|Nanoce1779_2|600319, mRNA_7870 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600319
Unique Name	mRNA_7870
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2646
Alignment location	scaffold_22:31983..34628 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600405
Track	FilteredModels2
ProteinId	600319

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:31983..34628 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600319	gene_7870	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600319	mRNA_7870-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7870	CDS_7870	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:31983..34628+
coding sequence from alignment at scaffold_22:31983..34628+

mRNA sequence

>mRNA_7870 ID=mRNA_7870|Name=jgi.p|Nanoce1779_2|600319|organism=Nannochloropsis oceanica|type=mRNA|length=2646bp
TCCAAAGATCAAAAGCGGGTCTAATATAATGTTGACCGCCGCGACGAGGA
AAGTTACCGGAAGAGGGGTCAAGGTGTCGCCAAACCCTCTGTAAGCCCCT
TCACAAACCATGAGCGTCAGCACTGCAGGTGCGGCAAGGGCCCGCGCCCT
GAGGTACGGGAGGCCGGTACGGGCGAGGAGGGAGGACGGCGGGGCGCCCA
TCAAGGAGAGGGCGAATGCCGCCTGGGTGGAGAGGAAGAAGGCCACCAGG
GAGCCCAGAGCAGAGGCAAGGACAAGGGCCTGGAGCACGACACTACGCAC
CCGTTTCTTGTCCCCCACGGCCAGGGAGGAGGAGACGAGGGAGGTTGTAC
TCTGGCTGAAGGCCCGAAAAGCGTTGAAGGACAGGTGGAAGATCGAGGTG
CACGGACCGAGGGACGCCAAGGCAATGGTGCCCACTCTGGCGACATAGGC
CGTGTCGCACAAAGATAGAAAAGGATCGACGAGGAGGGTGAGGAGGGCGG
GGAGGGAAATGCGCAAAATTTCCCCGTCGTGTTCGGACATGCCGGTTTGA
AGGCGCGCGAGAAAGGATGGCGAGGAGGAGGAAGAGTTGCTGCCATGGAG
GCGAGCTAGGAGGCGACGGAAGAGGAGGAGACGATGGCGGGAGAAAGAAG
AAGAGGTAGAGTTAAGGGGATTGGACCCCGGCTGGTGCTCAACGCCTCCG
GCACGTGTGAGGAGGCGGAAAAGTAATAATGACGTCAGTACCCTCTTTTT
ACGGCCCTCTTTCTCCTCCGGCGTAGGATAGGACGGGGGTGATGATGGAC
CGTTGTGATCGTCGTCGTTGTCGTAATTGATCATCAGGTTGTCGCTGCCG
CTGTGCCAATGGAGCAGAGAGGGCAGTGACGTGTGGAATGGCCTAACTGA
TCGGGGTTTGGGTGACAGGTAGGGGAGGCAGCGGAAATGGTAATGGGGCA
ACGATTGGGGTAGAAAGGGGGAGGTGGGACACGGCAGTCGAAATGCATCA
CTGCCAGAATTCAGGAGGAGGAGGAGCAGCTGCAGCATGACGAAGGCAGG
CACGCCTGAGGTAAGTGGGGAGGGGAGGGTGAGGGAGGCGAGCGGTTAAG
GAACGGCACATTTCCTCCTTTTCTCTCTGGTAAGACTTCGAAATTTGTCG
GCTCTACAGGGATCATACCTTGTCGAAAGCGACCGCGACGCCGGTGGTGG
TAATACAGCAGTATGGTGAGAAGACTGGAAGCACAGGGGAAGCGGCCGGA
ATATGGGATATATTGTTGGTGGGCTGAAGGGATGGGCTTTTATGCTGGCC
TGGCCGAGAAGGGTGGGAAAGCAGATAGGAAAGATAGAGACAAGAGCGAC
GTGAGCAAGGGTGGCAAGCAAACTATAAAAGCGGCATATTTGCGTTAGGA
GAATTGGGAAGAGATAGGGAAGAAGCAGCCAGTGACTGACACATGAGAAA
CCTCCCCTGTACCCACCACCGCAAGCACAAACCTCCCCTGTACCCACCAA
TTTACGCATGCAACAAATCAACAAAACAAGAAACACTTCCACGTAGATAA
GGTCAGGGACTGTACATGTTGATTTGCTGTCATTTCGGCTGTTCTACAGA
CTTTTGTACTTTTTCTTTATCCTACAAGCCAGTGTCACATTGCTCGAGCC
GCCGGCTTCCTGTCCTCCCTCTCTTTTTACCCTCCCTGCTATACGAGCCA
GTTCTTTGACCACATGTACCTTAAGCTTCTCGTCCACTCTCCTCTTTTCC
CCCCTCCTTCGCGCTTTCCATTTTCATTTCGTCCATTGGTCAAGCCGCAC
GCTCAACGTAATCTCTTGCCCTCCTCCCTTCCATTTCTCCTCCTCCTCCT
CCTTCTGATCCATCGCCACCACTTCCGTCCATCCCTCCACCCATCCTCCC
ATTGCTTGCCCTCCTCCTCCCATATCTTCCACCCCTTCCCCGACGGATGC
TGTGTGTGAGAGTAAAAGCTGGCGCACCAACTCCTGTGCGCTCCTCCTCC
TTTTCCCTCCCTCCTCCTCATTCCACCACGCAGACTCCGGCAACAACAAT
ACGGCATTCGCATGAGGTCCCAAGAAAATCGCTCGCCGACTTAGAGAGAG
CGACCACAACCTTTTCTCCCCCGTTTCCTCCGTCCCTCCCTCCTCCTCCT
CCTCCTCTTTATCCTCCACCTCTATCACGTCCATCATCGCCCCTGCTTCC
TCTATTTCCCCTCCCCTTCCTCTCCCCCTCCCTTGCCCTAAGCGAGGCGT
ATATGCAAGCACATCACACGGCAAAGAATGCAATAATCGGCGTTCCTCCT
CTCTCGACAAACCTCCCCACACACCTCCCCTCTCTTTCTCCCCATCCTCC
TCCTGCGCCAACCCCCTCAGAACTCTCTCAAGCTCCGAACTTCTTCCTTC
TTGTCCTCGTTGTCTTCCCTCTCGTCCCACAGCAGGGTCAGAGGGAACAA
AGGGGAGATACGAGACAAAAGGAGAACGGCCGGAAGCACCAGCAGCAGTA
GTAAGAAGGCGATTTGCCTCTGTCCGAGCGAGAAGGCGATGAATCGAAGG
GTAGGGAGGGGGGGAAGGAGGGAGGGAAGACGTGCTGGTTGAAGAAGAAG
ATATGAGAAGAAAGTGCTGCCAAAGCTGGGAGAGGGATCTGTCTAC

protein sequence of jgi.p|Nanoce1779_2|600319

>mRNA_7870-protein ID=mRNA_7870-protein|Name=jgi.p|Nanoce1779_2|600319|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MLCVRVKAGAPTPVRSSSFSLPPPHSTTQTPATTIRHSHEVPRKSLADLE
RATTTFSPPFPPSLPPPPPPLYPPPLSRPSSPLLPLFPLPFLSPSLALSE
AYMQAHHTAKNAIIGVPPLSTNLPTHLPSLSPHPPPAPTPSELSQAPNFF
LLVLVVFPLVPQQGQREQRGDTRQKENGRKHQQQ*

mRNA from alignment at scaffold_22:31983..34628+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7870 ID=mRNA_7870|Name=jgi.p|Nanoce1779_2|600319|organism=Nannochloropsis oceanica|type=mRNA|length=2646bp|location=Sequence derived from alignment at scaffold_22:31983..34628+ (Nannochloropsis oceanica)
TCCAAAGATCAAAAGCGGGTCTAATATAATGTTGACCGCCGCGACGAGGA
AAGTTACCGGAAGAGGGGTCAAGGTGTCGCCAAACCCTCTGTAAGCCCCT
TCACAAACCATGAGCGTCAGCACTGCAGGTGCGGCAAGGGCCCGCGCCCT
GAGGTACGGGAGGCCGGTACGGGCGAGGAGGGAGGACGGCGGGGCGCCCA
TCAAGGAGAGGGCGAATGCCGCCTGGGTGGAGAGGAAGAAGGCCACCAGG
GAGCCCAGAGCAGAGGCAAGGACAAGGGCCTGGAGCACGACACTACGCAC
CCGTTTCTTGTCCCCCACGGCCAGGGAGGAGGAGACGAGGGAGGTTGTAC
TCTGGCTGAAGGCCCGAAAAGCGTTGAAGGACAGGTGGAAGATCGAGGTG
CACGGACCGAGGGACGCCAAGGCAATGGTGCCCACTCTGGCGACATAGGC
CGTGTCGCACAAAGATAGAAAAGGATCGACGAGGAGGGTGAGGAGGGCGG
GGAGGGAAATGCGCAAAATTTCCCCGTCGTGTTCGGACATGCCGGTTTGA
AGGCGCGCGAGAAAGGATGGCGAGGAGGAGGAAGAGTTGCTGCCATGGAG
GCGAGCTAGGAGGCGACGGAAGAGGAGGAGACGATGGCGGGAGAAAGAAG
AAGAGGTAGAGTTAAGGGGATTGGACCCCGGCTGGTGCTCAACGCCTCCG
GCACGTGTGAGGAGGCGGAAAAGTAATAATGACGTCAGTACCCTCTTTTT
ACGGCCCTCTTTCTCCTCCGGCGTAGGATAGGACGGGGGTGATGATGGAC
CGTTGTGATCGTCGTCGTTGTCGTAATTGATCATCAGGTTGTCGCTGCCG
CTGTGCCAATGGAGCAGAGAGGGCAGTGACGTGTGGAATGGCCTAACTGA
TCGGGGTTTGGGTGACAGGTAGGGGAGGCAGCGGAAATGGTAATGGGGCA
ACGATTGGGGTAGAAAGGGGGAGGTGGGACACGGCAGTCGAAATGCATCA
CTGCCAGAATTCAGGAGGAGGAGGAGCAGCTGCAGCATGACGAAGGCAGG
CACGCCTGAGGTAAGTGGGGAGGGGAGGGTGAGGGAGGCGAGCGGTTAAG
GAACGGCACATTTCCTCCTTTTCTCTCTGGTAAGACTTCGAAATTTGTCG
GCTCTACAGGGATCATACCTTGTCGAAAGCGACCGCGACGCCGGTGGTGG
TAATACAGCAGTATGGTGAGAAGACTGGAAGCACAGGGGAAGCGGCCGGA
ATATGGGATATATTGTTGGTGGGCTGAAGGGATGGGCTTTTATGCTGGCC
TGGCCGAGAAGGGTGGGAAAGCAGATAGGAAAGATAGAGACAAGAGCGAC
GTGAGCAAGGGTGGCAAGCAAACTATAAAAGCGGCATATTTGCGTTAGGA
GAATTGGGAAGAGATAGGGAAGAAGCAGCCAGTGACTGACACATGAGAAA
CCTCCCCTGTACCCACCACCGCAAGCACAAACCTCCCCTGTACCCACCAA
TTTACGCATGCAACAAATCAACAAAACAAGAAACACTTCCACGTAGATAA
GGTCAGGGACTGTACATGTTGATTTGCTGTCATTTCGGCTGTTCTACAGA
CTTTTGTACTTTTTCTTTATCCTACAAGCCAGTGTCACATTGCTCGAGCC
GCCGGCTTCCTGTCCTCCCTCTCTTTTTACCCTCCCTGCTATACGAGCCA
GTTCTTTGACCACATGTACCTTAAGCTTCTCGTCCACTCTCCTCTTTTCC
CCCCTCCTTCGCGCTTTCCATTTTCATTTCGTCCATTGGTCAAGCCGCAC
GCTCAACGTAATCTCTTGCCCTCCTCCCTTCCATTTCTCCTCCTCCTCCT
CCTTCTGATCCATCGCCACCACTTCCGTCCATCCCTCCACCCATCCTCCC
ATTGCTTGCCCTCCTCCTCCCATATCTTCCACCCCTTCCCCGACGGATGC
TGTGTGTGAGAGTAAAAGCTGGCGCACCAACTCCTGTGCGCTCCTCCTCC
TTTTCCCTCCCTCCTCCTCATTCCACCACGCAGACTCCGGCAACAACAAT
ACGGCATTCGCATGAGGTCCCAAGAAAATCGCTCGCCGACTTAGAGAGAG
CGACCACAACCTTTTCTCCCCCGTTTCCTCCGTCCCTCCCTCCTCCTCCT
CCTCCTCTTTATCCTCCACCTCTATCACGTCCATCATCGCCCCTGCTTCC
TCTATTTCCCCTCCCCTTCCTCTCCCCCTCCCTTGCCCTAAGCGAGGCGT
ATATGCAAGCACATCACACGGCAAAGAATGCAATAATCGGCGTTCCTCCT
CTCTCGACAAACCTCCCCACACACCTCCCCTCTCTTTCTCCCCATCCTCC
TCCTGCGCCAACCCCCTCAGAACTCTCTCAAGCTCCGAACTTCTTCCTTC
TTGTCCTCGTTGTCTTCCCTCTCGTCCCACAGCAGGGTCAGAGGGAACAA
AGGGGAGATACGAGACAAAAGGAGAACGGCCGGAAGCACCAGCAGCAGTA
GTAAGAAGGCGATTTGCCTCTGTCCGAGCGAGAAGGCGATGAATCGAAGG
GTAGGGAGGGGGGGAAGGAGGGAGGGAAGACGTGCTGGTTGAAGAAGAAG
ATATGAGAAGAAAGTGCTGCCAAAGCTGGGAGAGGGATCTGTCTAC

Coding sequence (CDS) from alignment at scaffold_22:31983..34628+

>mRNA_7870 ID=mRNA_7870|Name=jgi.p|Nanoce1779_2|600319|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_22:31983..34628+ (Nannochloropsis oceanica)
ATGCTGTGTGTGAGAGTAAAAGCTGGCGCACCAACTCCTGTGCGCTCCTC
CTCCTTTTCCCTCCCTCCTCCTCATTCCACCACGCAGACTCCGGCAACAA
CAATACGGCATTCGCATGAGGTCCCAAGAAAATCGCTCGCCGACTTAGAG
AGAGCGACCACAACCTTTTCTCCCCCGTTTCCTCCGTCCCTCCCTCCTCC
TCCTCCTCCTCTTTATCCTCCACCTCTATCACGTCCATCATCGCCCCTGC
TTCCTCTATTTCCCCTCCCCTTCCTCTCCCCCTCCCTTGCCCTAAGCGAG
GCGTATATGCAAGCACATCACACGGCAAAGAATGCAATAATCGGCGTTCC
TCCTCTCTCGACAAACCTCCCCACACACCTCCCCTCTCTTTCTCCCCATC
CTCCTCCTGCGCCAACCCCCTCAGAACTCTCTCAAGCTCCGAACTTCTTC
CTTCTTGTCCTCGTTGTCTTCCCTCTCGTCCCACAGCAGGGTCAGAGGGA
ACAAAGGGGAGATACGAGACAAAAGGAGAACGGCCGGAAGCACCAGCAGC
AGTAG

Synonyms

Publications