jgi.p|Nanoce1779_2|574050, mRNA_762 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574050
Unique NamemRNA_762
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1437
Alignment locationscaffold_2:377595..379359 -

Link to JBrowse

Properties
Property NameValue
TranscriptId574136
TrackFilteredModels2
ProteinId574050
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:377595..379359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574050gene_762Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574050mRNA_762-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_762CDS_762Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_762 ID=mRNA_762|Name=jgi.p|Nanoce1779_2|574050|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp
AGCAAGACGAAACAGGGGCGGCCACCTTCCAGCTGGGCCAGCGGGCCGGA
GAGGCGAGGCTGAGGGCAACGACAACTTTATCATCAAGCGTACGCCGGGA
TCGAAGCCCGTTCGCCCCCATCATTCGTCTTCCTTCTCCTGCGCTGCGCA
GAGCGACCATCACGAGGAGGTCCACCACCACGAATAGCAGCCATGGCGAC
GCGGGACTTGACGCGGAAGTTTGTGGACTACCGTACGACGGCCAAGATTA
TTGGCCGCAACTCCCTTTCCCCCCTCAGTGGCTACACCATGGACAGCGGC
TTGTTAGAGGACGCCAACCGCGACGGCAATACGGGATGGGCCGCTGCTCG
TTTGCAGCTGCCCCCCGCCTGGGTAGACTTAGTTGATCGCGTTGATGCCC
TCACAGCGCAGTTGGAAGCGAAAATGAAAGAATTGGAGGCGTTGCATCGG
AAGAGGCTGTTAGTAGGGTTCGATGATAGCGAGGCAGCCAAGGAGAGAGA
CATCGATTACATGACTCAGGAAATAACAGCCACGTTCCGGGAGGCCGAAT
CAATACTAAAACAATTAGGAGGAGGAGAAAGAAGTGAGGGAGGTACTGAA
CGAGTGGTCACGCGAAATGTACAGAAGAGTATGGCAAAGCGGATACAGGG
CTTGTCGATTGAGTTTCGAAAGACCCAGAAACATTACATGGCGCAGCTGA
AAGCGCAAAAGGCAGGGGCGGGGGGCGCGCCATTTTTTGACTTTTTGTCA
GCGGAGCATGGTGGTGCTGGAGGCTTGTTGGAGATAGAGAGGAAGATGAG
GGAGGAGGGAGGGATTGAGGGGGGATTTACCCCGGAGCAGCTAGCGGTGT
TGGAGGAGCAGGAGGCGGTGACGGCAGAGAGGGACCAGGAGATACAGCAC
ATTGCCCGAAGCATAGAGGAGTTGTCACAGATTTTCAAGGAGCTTGCCGT
GTTGGTAATTGACCAGGGGACAGTGCTGGATCGGATTGATTTCAACATGG
AGCAGGTGGTTGAGCATACGAAGGAGGGTGTGCATCAGTTGGTGAGGGCG
GAGGAGAATCAGAAGTCGGCTAAGGCGACGAGGTGCATTGTGTGCTTGTT
GTGTGCAATTTTTGTGATGATTATCATTCTGATCATCAAGCACAGGTGAC
GACATTCTCTCGCTTTAGGGTCTCCTTTCTTTTGCTGCTCGTCCTTTTTG
AAATAATATGTTTTCAAATATTCAAAAATGTAGCCCCCATGTAACAAAAT
CTGAATGCATGTTTTTTTGGGTAATTTAAGCGACTGTGTATGGGTGTTCA
CTATTCGTGACCGTGAGGACTTTCCTGGTAAACGAAGACATGGATGGCCA
TGACCACCTTTTTTTTCCTTACCAAAAGAAGAAAAGGCACAGCAAAGCGC
AAAATAAATTCTCTGCGTCCTGCGTACTTATATCAAA
back to top

protein sequence of jgi.p|Nanoce1779_2|574050

>mRNA_762-protein ID=mRNA_762-protein|Name=jgi.p|Nanoce1779_2|574050|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MATRDLTRKFVDYRTTAKIIGRNSLSPLSGYTMDSGLLEDANRDGNTGWA
AARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAK
ERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKR
IQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAEHGGAGGLLEIER
KMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKE
LAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQKSAKATRCIV
CLLCAIFVMIIILIIKHR*
back to top

mRNA from alignment at scaffold_2:377595..379359-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_762 ID=mRNA_762|Name=jgi.p|Nanoce1779_2|574050|organism=Nannochloropsis oceanica|type=mRNA|length=1765bp|location=Sequence derived from alignment at scaffold_2:377595..379359- (Nannochloropsis oceanica)
AGCAAGACGAAACAGGGGCGGCCACCTTCCAGCTGGGCCAGCGGGCCGGA
GAGGCGAGGCTGAGGGCAACGACAACTTTATCATCAAGCGTACGCCGGGA
TCGAAGCCCGTTCGCCCCCATCATTCGTCTTCCTTCTCCTGCGCTGCGCA
GAGCGACCATCACGAGGAGGTCCACCACCACGAATAGCAGCCATGGCGAC
GCGGGACTTGACGCGGAAGTTTGTGGACTACCGTACGACGGCCAAGGTAA
GAACAAAGGAAGAGATGATGTGGGAGGGTGGGAGGGAAGTATATGAAGTG
TGGGTGGATGGGTAGAGGATGGGAGGGTGGATGTGTAGAACGGATGGAAT
TGTGTATCAAGAGCTGATAAACGATTTTGTGGCTGCTGAAAGGAAGCTAA
GCCGTAGCTGGGATGGGTACGACAGACCTTACATGCGATCGGAAGGAGCC
GAAAGGAGGGAGGAATTAATTGGGTGTGCTTCGAGAATCTCTACGAGTCG
TCTTCGGTGTGTTGAGCTCGCCTGCCACATCCTTCAGAACTTACATAAAT
CTTTTCCATTCTCACTCCTCCCAGATTATTGGCCGCAACTCCCTTTCCCC
CCTCAGTGGCTACACCATGGACAGCGGCTTGTTAGAGGACGCCAACCGCG
ACGGCAATACGGGATGGGCCGCTGCTCGTTTGCAGCTGCCCCCCGCCTGG
GTAGACTTAGTTGATCGCGTTGATGCCCTCACAGCGCAGTTGGAAGCGAA
AATGAAAGAATTGGAGGCGTTGCATCGGAAGAGGCTGTTAGTAGGGTTCG
ATGATAGCGAGGCAGCCAAGGAGAGAGACATCGATTACATGACTCAGGAA
ATAACAGCCACGTTCCGGGAGGCCGAATCAATACTAAAACAATTAGGAGG
AGGAGAAAGAAGTGAGGGAGGTACTGAACGAGTGGTCACGCGAAATGTAC
AGAAGAGTATGGCAAAGCGGATACAGGGCTTGTCGATTGAGTTTCGAAAG
ACCCAGAAACATTACATGGCGCAGCTGAAAGCGCAAAAGGCAGGGGCGGG
GGGCGCGCCATTTTTTGACTTTTTGTCAGCGGAGCATGGTGGTGCTGGAG
GCTTGTTGGAGATAGAGAGGAAGATGAGGGAGGAGGGAGGGATTGAGGGG
GGATTTACCCCGGAGCAGCTAGCGGTGTTGGAGGAGCAGGAGGCGGTGAC
GGCAGAGAGGGACCAGGAGATACAGCACATTGCCCGAAGCATAGAGGAGT
TGTCACAGATTTTCAAGGAGCTTGCCGTGTTGGTAATTGACCAGGGGACA
GTGCTGGATCGGATTGATTTCAACATGGAGCAGGTGGTTGAGCATACGAA
GGAGGGTGTGCATCAGTTGGTGAGGGCGGAGGAGAATCAGAAGTCGGCTA
AGGCGACGAGGTGCATTGTGTGCTTGTTGTGTGCAATTTTTGTGATGATT
ATCATTCTGATCATCAAGCACAGGTGACGACATTCTCTCGCTTTAGGGTC
TCCTTTCTTTTGCTGCTCGTCCTTTTTGAAATAATATGTTTTCAAATATT
CAAAAATGTAGCCCCCATGTAACAAAATCTGAATGCATGTTTTTTTGGGT
AATTTAAGCGACTGTGTATGGGTGTTCACTATTCGTGACCGTGAGGACTT
TCCTGGTAAACGAAGACATGGATGGCCATGACCACCTTTTTTTTCCTTAC
CAAAAGAAGAAAAGGCACAGCAAAGCGCAAAATAAATTCTCTGCGTCCTG
CGTACTTATATCAAA
back to top

Coding sequence (CDS) from alignment at scaffold_2:377595..379359-

>mRNA_762 ID=mRNA_762|Name=jgi.p|Nanoce1779_2|574050|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at scaffold_2:377595..379359- (Nannochloropsis oceanica)
ATTATTGGCCGCAACTCCCTTTCCCCCCTCAGTGGCTACACCATGGACAG
CGGCTTGTTAGAGGACGCCAACCGCGACGGCAATACGGGATGGGCCGCTG
CTCGTTTGCAGCTGCCCCCCGCCTGGGTAGACTTAGTTGATCGCGTTGAT
GCCCTCACAGCGCAGTTGGAAGCGAAAATGAAAGAATTGGAGGCGTTGCA
TCGGAAGAGGCTGTTAGTAGGGTTCGATGATAGCGAGGCAGCCAAGGAGA
GAGACATCGATTACATGACTCAGGAAATAACAGCCACGTTCCGGGAGGCC
GAATCAATACTAAAACAATTAGGAGGAGGAGAAAGAAGTGAGGGAGGTAC
TGAACGAGTGGTCACGCGAAATGTACAGAAGAGTATGGCAAAGCGGATAC
AGGGCTTGTCGATTGAGTTTCGAAAGACCCAGAAACATTACATGGCGCAG
CTGAAAGCGCAAAAGGCAGGGGCGGGGGGCGCGCCATTTTTTGACTTTTT
GTCAGCGGAGCATGGTGGTGCTGGAGGCTTGTTGGAGATAGAGAGGAAGA
TGAGGGAGGAGGGAGGGATTGAGGGGGGATTTACCCCGGAGCAGCTAGCG
GTGTTGGAGGAGCAGGAGGCGGTGACGGCAGAGAGGGACCAGGAGATACA
GCACATTGCCCGAAGCATAGAGGAGTTGTCACAGATTTTCAAGGAGCTTG
CCGTGTTGGTAATTGACCAGGGGACAGTGCTGGATCGGATTGATTTCAAC
ATGGAGCAGGTGGTTGAGCATACGAAGGAGGGTGTGCATCAGTTGGTGAG
GGCGGAGGAGAATCAGAAGTCGGCTAAGGCGACGAGGTGCATTGTGTGCT
TGTTGTGTGCAATTTTTGTGATGATTATCATTCTGATCATCAAGCACAGG
TGAATGGCGACGCGGGACTTGACGCGGAAGTTTGTGGACTACCGTACGAC
GGCCAAGATTATTGGCCGCAACTCCCTTTCCCCCCTCAGTGGCTACACCA
TGGACAGCGGCTTGTTAGAGGACGCCAACCGCGACGGCAATACGGGATGG
GCCGCTGCTCGTTTGCAGCTGCCCCCCGCCTGGGTAGACTTAGTTGATCG
CGTTGATGCCCTCACAGCGCAGTTGGAAGCGAAAATGAAAGAATTGGAGG
CGTTGCATCGGAAGAGGCTGTTAGTAGGGTTCGATGATAGCGAGGCAGCC
AAGGAGAGAGACATCGATTACATGACTCAGGAAATAACAGCCACGTTCCG
GGAGGCCGAATCAATACTAAAACAATTAGGAGGAGGAGAAAGAAGTGAGG
GAGGTACTGAACGAGTGGTCACGCGAAATGTACAGAAGAGTATGGCAAAG
CGGATACAGGGCTTGTCGATTGAGTTTCGAAAGACCCAGAAACATTACAT
GGCGCAGCTGAAAGCGCAAAAGGCAGGGGCGGGGGGCGCGCCATTTTTTG
ACTTTTTGTCAGCGGAGCATGGTGGTGCTGGAGGCTTGTTGGAGATAGAG
AGGAAGATGAGGGAGGAGGGAGGGATTGAGGGGGGATTTACCCCGGAGCA
GCTAGCGGTGTTGGAGGAGCAGGAGGCGGTGACGGCAGAGAGGGACCAGG
AGATACAGCACATTGCCCGAAGCATAGAGGAGTTGTCACAGATTTTCAAG
GAGCTTGCCGTGTTGGTAATTGACCAGGGGACAGTGCTGGATCGGATTGA
TTTCAACATGGAGCAGGTGGTTGAGCATACGAAGGAGGGTGTGCATCAGT
TGGTGAGGGCGGAGGAGAATCAGAAGTCGGCTAAGGCGACGAGGTGCATT
GTGTGCTTGTTGTGTGCAATTTTTGTGATGATTATCATTCTGATCATCAA
GCACAGGTGAATGGCGACGCGGGACTTGACGCGGAAGTTTGTGGACTACC
GTACGACGGCCAAG
back to top
Synonyms
Publications