jgi.p|Nanoce1779_2|573906, mRNA_717 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573906
Unique Name	mRNA_717
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1338
Alignment location	scaffold_2:271076..272751 +

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Properties


Property Name	Value
TranscriptId	573992
Track	FilteredModels2
ProteinId	573906

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:271076..272751 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573906	gene_717	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573906	mRNA_717-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_717	CDS_717	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:271076..272751+
coding sequence from alignment at scaffold_2:271076..272751+

mRNA sequence

>mRNA_717 ID=mRNA_717|Name=jgi.p|Nanoce1779_2|573906|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp
ACAGTTCAAGCATGTTGCCCGGTTATCAGCCTCCTCGTTGGGCTCCGCCT
AGGAAGCACGGTCTGCAATTGCCCCTCTCTCGGGACCAACTGGGCGCTAT
GATCATCTACCCGCTCCTGACCCTGGCCTTCTACCTCATCGCCTCCTTCT
ACCTCCCAAACGCCTATCTTCCCCTGGTCCTTGGTCTTTACTCCACTCTC
GTCTTTTTTTCCCTCTTCTGCTGGGGCTACATTTCTTTGACTGATCCCGC
CCAACCAGGAGGAATTTCTTGTCGATGTATGAAGTTCACGCAAGGGCACT
CGCGATATTGCGCCTCGTGTCGAAAATCAGTCCCGGGGCTCGACCACCAT
TGCCTGTGGCTTAATACGTGCATTGGAACTCGAAATTATCTCTTCTTCTT
CCTGCTTGCCCTTGCCGGGACATTGCAATTCGGACTCCAAACCCTGACCA
GCCTCCTCCTTCTCACCCTCTGGTTCAAACCTGCCTCCTCCTCCACCATG
ACCGCCTCCGCCGAGGAGGTCTCCCATGCCATCAGTCGCACTGTCGGGAA
ACGACTTACTTTCAAAGCCTTTATGATCGTTCACACGGTTGCGGCTGCTC
TGGCCTTCGTTTCCTTCGCCTCCCTGTGTATCTTCCATGGGTACCTGCAA
AGTAAAGGGCTTGGAACGTATGACTGGATCTTGCGGCAGAGGGTCATTCC
TCCCGCCACGACTCGACCTTCTGGAGCTGCTGTTGAGTCTGCTAGTGTAG
GGACGGGGAACACAGCAGCGACTAGGCCGATTGGGGGAGGACGCGGCGGC
AGCAGCCATATCAACAGCAATAGCAACAGCAATGGAGGATCCTCCCAACC
CGGGGCATCACTACCTCCACCGCCTTCCACATCCATGGCAACCTTAACAT
CAGAAGCCGCAACAGGAGCAATTTCAGATGGAGAGCATGTAGCTGTCAAT
GTTTCCCCCCCCTTCCACTTGACCTCTGATGAGAGGTATTTTAAAGCAGG
CAAGGGAGGGAGGAAGGAAGAAATGGTTACTAATGGCCCAGACGCGGCAG
CGACCACAACGGAGATAGGAGGGGAGGGAGTGCAAAGACGACATGACGAA
GAACATGGCGTAAGGAGGGAATAAAAATGAGTAAATAGAAGTTAAAGTTC
GAAAGACATCATCGAAAAAAGATTCATTGATGAAGGCACTTTTCTCTTTG
TCTGTTGGCTTGGTCGATCATCGGTTTTATGCTGTATCTTTTTTTTTGTG
GTGTTCATGGTAGTGGTTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGC
CCCTGCTTTCACATCTTTGCGGTTGTCTTCATTCGCTC

protein sequence of jgi.p|Nanoce1779_2|573906

>mRNA_717-protein ID=mRNA_717-protein|Name=jgi.p|Nanoce1779_2|573906|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MLPGYQPPRWAPPRKHGLQLPLSRDQLGAMIIYPLLTLAFYLIASFYLPN
AYLPLVLGLYSTLVFFSLFCWGYISLTDPAQPGGISCRCMKFTQGHSRYC
ASCRKSVPGLDHHCLWLNTCIGTRNYLFFFLLALAGTLQFGLQTLTSLLL
LTLWFKPASSSTMTASAEEVSHAISRTVGKRLTFKAFMIVHTVAAALAFV
SFASLCIFHGYLQSKGLGTYDWILRQRVIPPATTRPSGAAVESASVGTGN
TAATRPIGGGRGGSSHINSNSNSNGGSSQPGASLPPPPSTSMATLTSEAA
TGAISDGEHVAVNVSPPFHLTSDERYFKAGKGGRKEEMVTNGPDAAATTT
EIGGEGVQRRHDEEHGVRRE*

mRNA from alignment at scaffold_2:271076..272751+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_717 ID=mRNA_717|Name=jgi.p|Nanoce1779_2|573906|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp|location=Sequence derived from alignment at scaffold_2:271076..272751+ (Nannochloropsis oceanica)
ACAGTTCAAGCATGTTGCCCGGTTATCAGCCTCCTCGTTGGGCTCCGCCT
AGGAAGCACGGTCTGCAATTGCCCCTCTCTCGGGACCAACTGGGCGCTAT
GATCATCTACCCGCTCCTGACCCTGGTACGTGTGTGCGCGCTCGCGGCGC
GGAGAGGGGACGACATGGAAGAAATTGGATGCAGCAAGTAAAGCACGTCC
GGATTGTCCTAAGTACTCGTATTCTGTACACTTGGCTCTACAGCTCGCTA
ACTGACCCCTCCCTCTTTTCCTCCCTTTTCCGAAATCCAAGGCCTTCTAC
CTCATCGCCTCCTTCTACCTCCCAAACGCCTATCTTCCCCTGGTCCTTGG
TCTTTACTCCACTCTCGTCTTTTTTTCCCTCTTCTGCTGGGGCTACATTT
CTTTGACTGATCCCGCCCAACCAGGAGGAATTTCTTGTCGATGTATGAAG
TTCACGCAAGGGCACTCGCGATATTGCGCCTCGTGTCGAAAATCAGTCCC
GGGGCTCGACCACCATTGCCTGTGGCTTAATACGTGCATTGGAACTCGGT
GCGTTTGAGGAGAAGGGGGGAGGGAGAGGGGTAGGAAGGGCTCTACTTCG
ATCCAGGGATGTTCGCGCTCGAATGACCGCGAGGACGCAAGTAACTTGCT
GCTCTCATTTATTTCTAACCTCATTGTTTATTACCTCTCTCTCTCCACCT
CTCCCCCTCGTTCTCTTCAGAAATTATCTCTTCTTCTTCCTGCTTGCCCT
TGCCGGGACATTGCAATTCGGACTCCAAACCCTGACCAGCCTCCTCCTTC
TCACCCTCTGGTTCAAACCTGCCTCCTCCTCCACCATGACCGCCTCCGCC
GAGGAGGTCTCCCATGCCATCAGTCGCACTGTCGGGAAACGACTTACTTT
CAAAGCCTTTATGATCGTTCACACGGTTGCGGCTGCTCTGGCCTTCGTTT
CCTTCGCCTCCCTGTGTATCTTCCATGGGTACCTGCAAAGTAAAGGGCTT
GGAACGTATGACTGGATCTTGCGGCAGAGGGTCATTCCTCCCGCCACGAC
TCGACCTTCTGGAGCTGCTGTTGAGTCTGCTAGTGTAGGGACGGGGAACA
CAGCAGCGACTAGGCCGATTGGGGGAGGACGCGGCGGCAGCAGCCATATC
AACAGCAATAGCAACAGCAATGGAGGATCCTCCCAACCCGGGGCATCACT
ACCTCCACCGCCTTCCACATCCATGGCAACCTTAACATCAGAAGCCGCAA
CAGGAGCAATTTCAGATGGAGAGCATGTAGCTGTCAATGTTTCCCCCCCC
TTCCACTTGACCTCTGATGAGAGGTATTTTAAAGCAGGCAAGGGAGGGAG
GAAGGAAGAAATGGTTACTAATGGCCCAGACGCGGCAGCGACCACAACGG
AGATAGGAGGGGAGGGAGTGCAAAGACGACATGACGAAGAACATGGCGTA
AGGAGGGAATAAAAATGAGTAAATAGAAGTTAAAGTTCGAAAGACATCAT
CGAAAAAAGATTCATTGATGAAGGCACTTTTCTCTTTGTCTGTTGGCTTG
GTCGATCATCGGTTTTATGCTGTATCTTTTTTTTTGTGGTGTTCATGGTA
GTGGTTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCCCCTGCTTTCAC
ATCTTTGCGGTTGTCTTCATTCGCTC

Coding sequence (CDS) from alignment at scaffold_2:271076..272751+

>mRNA_717 ID=mRNA_717|Name=jgi.p|Nanoce1779_2|573906|organism=Nannochloropsis oceanica|type=CDS|length=3339bp|location=Sequence derived from alignment at scaffold_2:271076..272751+ (Nannochloropsis oceanica)
ATGTTGCCCGGTTATCAGCCTCCTCGTTGGGCTCCGCCTAGGAAGCACGG
TCTGCAATTGCCCCTCTCTCGGGACCAACTGGGCGCTATGATCATCTACC
CGCTCCTGACCCTGGCCTTCTACCTCATCGCCTCCTTCTACCTCCCAAAC
GCCTATCTTCCCCTGGTCCTTGGTCTTTACTCCACTCTCGTCTTTTTTTC
CCTCTTCTGCTGGGGCTACATTTCTTTGACTGATCCCGCCCAACCAGGAG
GAATTTCTTGTCGATGTATGAAGTTCACGCAAGGGCACTCGCGATATTGC
GCCTCGTGTCGAAAATCAGTCCCGGGGCTCGACCACCATTGCCTGTGGCT
TAATACGTGCATTGGAACTCGAAATTATCTCTTCTTCTTCCTGCTTGCCC
TTGCCGGGACATTGCAATTCGGACTCCAAACCCTGACCAGCCTCCTCCTT
CTCACCCTCTGGTTCAAACCTGCCTCCTCCTCCACCATGACCGCCTCCGC
CGAGGAGGTCTCCCATGCCATCAGTCGCACTGTCGGGAAACGACTTACTT
TCAAAGCCTTTATGATCGTTCACACGGTTGCGGCTGCTCTGGCCTTCGTT
TCCTTCGCCTCCCTGTGTATCTTCCATGGGTACCTGCAAAGTAAAGGGCT
TGGAACGTATGACTGGATCTTGCGGCAGAGGGTCATTCCTCCCGCCACGA
CTCGACCTTCTGGAGCTGCTGTTGAGTCTGCTAGTGTAGGGACGGGGAAC
ACAGCAGCGACTAGGCCGATTGGGGGAGGACGCGGCGGCAGCAGCCATAT
CAACAGCAATAGCAACAGCAATGGAGGATCCTCCCAACCCGGGGCATCAC
TACCTCCACCGCCTTCCACATCCATGGCAACCTTAACATCAGAAGCCGCA
ACAGGAGCAATTTCAGATGGAGAGCATGTAGCTGTCAATGTTTCCCCCCC
CTTCCACTTGACCTCTGATGAGAGGTATTTTAAAGCAGGCAAGGGAGGGA
GGAAGGAAGAAATGGTTACTAATGGCCCAGACGCGGCAGCGACCACAACG
GAGATAGGAGGGGAGGGAGTGCAAAGACGACATGACGAAGAACATGGCGT
AAGGAGGGAATAAATGTTGCCCGGTTATCAGCCTCCTCGTTGGGCTCCGC
CTAGGAAGCACGGTCTGCAATTGCCCCTCTCTCGGGACCAACTGGGCGCT
ATGATCATCTACCCGCTCCTGACCCTGGCCTTCTACCTCATCGCCTCCTT
CTACCTCCCAAACGCCTATCTTCCCCTGGTCCTTGGTCTTTACTCCACTC
TCGTCTTTTTTTCCCTCTTCTGCTGGGGCTACATTTCTTTGACTGATCCC
GCCCAACCAGGAGGAATTTCTTGTCGATGTATGAAGTTCACGCAAGGGCA
CTCGCGATATTGCGCCTCGTGTCGAAAATCAGTCCCGGGGCTCGACCACC
ATTGCCTGTGGCTTAATACGTGCATTGGAACTCGAAATTATCTCTTCTTC
TTCCTGCTTGCCCTTGCCGGGACATTGCAATTCGGACTCCAAACCCTGAC
CAGCCTCCTCCTTCTCACCCTCTGGTTCAAACCTGCCTCCTCCTCCACCA
TGACCGCCTCCGCCGAGGAGGTCTCCCATGCCATCAGTCGCACTGTCGGG
AAACGACTTACTTTCAAAGCCTTTATGATCGTTCACACGGTTGCGGCTGC
TCTGGCCTTCGTTTCCTTCGCCTCCCTGTGTATCTTCCATGGGTACCTGC
AAAGTAAAGGGCTTGGAACGTATGACTGGATCTTGCGGCAGAGGGTCATT
CCTCCCGCCACGACTCGACCTTCTGGAGCTGCTGTTGAGTCTGCTAGTGT
AGGGACGGGGAACACAGCAGCGACTAGGCCGATTGGGGGAGGACGCGGCG
GCAGCAGCCATATCAACAGCAATAGCAACAGCAATGGAGGATCCTCCCAA
CCCGGGGCATCACTACCTCCACCGCCTTCCACATCCATGGCAACCTTAAC
ATCAGAAGCCGCAACAGGAGCAATTTCAGATGGAGAGCATGTAGCTGTCA
ATGTTTCCCCCCCCTTCCACTTGACCTCTGATGAGAGGTATTTTAAAGCA
GGCAAGGGAGGGAGGAAGGAAGAAATGGTTACTAATGGCCCAGACGCGGC
AGCGACCACAACGGAGATAGGAGGGGAGGGAGTGCAAAGACGACATGACG
AAGAACATGGCGTAAGGAGGGAATAAATGTTGCCCGGTTATCAGCCTCCT
CGTTGGGCTCCGCCTAGGAAGCACGGTCTGCAATTGCCCCTCTCTCGGGA
CCAACTGGGCGCTATGATCATCTACCCGCTCCTGACCCTGGCCTTCTACC
TCATCGCCTCCTTCTACCTCCCAAACGCCTATCTTCCCCTGGTCCTTGGT
CTTTACTCCACTCTCGTCTTTTTTTCCCTCTTCTGCTGGGGCTACATTTC
TTTGACTGATCCCGCCCAACCAGGAGGAATTTCTTGTCGATGTATGAAGT
TCACGCAAGGGCACTCGCGATATTGCGCCTCGTGTCGAAAATCAGTCCCG
GGGCTCGACCACCATTGCCTGTGGCTTAATACGTGCATTGGAACTCGAAA
TTATCTCTTCTTCTTCCTGCTTGCCCTTGCCGGGACATTGCAATTCGGAC
TCCAAACCCTGACCAGCCTCCTCCTTCTCACCCTCTGGTTCAAACCTGCC
TCCTCCTCCACCATGACCGCCTCCGCCGAGGAGGTCTCCCATGCCATCAG
TCGCACTGTCGGGAAACGACTTACTTTCAAAGCCTTTATGATCGTTCACA
CGGTTGCGGCTGCTCTGGCCTTCGTTTCCTTCGCCTCCCTGTGTATCTTC
CATGGGTACCTGCAAAGTAAAGGGCTTGGAACGTATGACTGGATCTTGCG
GCAGAGGGTCATTCCTCCCGCCACGACTCGACCTTCTGGAGCTGCTGTTG
AGTCTGCTAGTGTAGGGACGGGGAACACAGCAGCGACTAGGCCGATTGGG
GGAGGACGCGGCGGCAGCAGCCATATCAACAGCAATAGCAACAGCAATGG
AGGATCCTCCCAACCCGGGGCATCACTACCTCCACCGCCTTCCACATCCA
TGGCAACCTTAACATCAGAAGCCGCAACAGGAGCAATTTCAGATGGAGAG
CATGTAGCTGTCAATGTTTCCCCCCCCTTCCACTTGACCTCTGATGAGAG
GTATTTTAAAGCAGGCAAGGGAGGGAGGAAGGAAGAAATGGTTACTAATG
GCCCAGACGCGGCAGCGACCACAACGGAGATAGGAGGGGAGGGAGTGCAA
AGACGACATGACGAAGAACATGGCGTAAGGAGGGAATAA

Synonyms

Publications