jgi.p|Nanoce1779_2|596208, mRNA_6750 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596208
Unique Name	mRNA_6750
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1396
Alignment location	scaffold_17:4941..6555 +

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Properties


Property Name	Value
TranscriptId	596294
Track	FilteredModels2
ProteinId	596208

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:4941..6555 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596208	gene_6750	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596208	mRNA_6750-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6750	CDS_6750	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:4941..6555+
coding sequence from alignment at scaffold_17:4941..6555+

mRNA sequence

>mRNA_6750 ID=mRNA_6750|Name=jgi.p|Nanoce1779_2|596208|organism=Nannochloropsis oceanica|type=mRNA|length=1396bp
ACAGCTCAGACAATAGGCAATCAATTTTTAGGAAGCGCTCCACCTGAACC
GATCCACTCACTCGTACTTAGTCGATCAAGCCCAAGGCGTCATCTCGGTC
ATCCCCACCACCATCATGCCCTCCTCCATCGCCGCTACGGTCATCTACAA
GCGGCCGGCGTCGCCTGCCATCTCCGTATCCTCGTGCGTTGAAGCCAGTG
ACCTACCCTCCAGTGTATATTGCAGCGGCCACCCGCTGCTGCAACACAAA
ATGACGCTCCTCCGGGACCGCAAGACCACCACGCGGGACTTCCGGCACCT
AATGCGAGAGCTCACTCTGTACCTAGGCTATGAAGCCACCACTGAAATCA
CGCTGAAGCCACGCGTAGTGGAGGGTACTCTGGGGCCCGTGGCCGGGCAG
AAGCTCTCGGACAAAATCGCCATCGTTCCAATCCTTCGAGGGGGTTTGGG
AATGGTCGATGCCATGACGGAGATCTTGCCGAATGCCGCTGTGTATCACA
TTGGTATGTTTAGTAACCATAAGTCCTCCAGCTTGCCTATTCAATACTAC
AATCGCCTGCCCAAGGAGAAGGATAAAGTCGCCGACCTCACCTTCGTCCT
TGACCCTCTCATTGCCACTGCCGGGACCTGTAGTGCCACGGTCTCGACCT
TGAAAAAATGGGGCGCTAAGAAGATCGTGGTGATTGGTGTGGTTGGTTCG
CTGCAAGGGCTGCATAAGCTGACCCAGGCACACCCTGATATTCGAGTGCA
TGTGGCGTCGATCGACGAGGCGATTTCAGAGGACGGGCATATCCTGCCCG
GGATTGGCGATGCGAGTGAAAGGTTGTTCACTGCCTATGGAGTGGGGGAG
CATGACGACGAGACCTCAGTGCACACGGTGGCCTCGGCCAAGAAGAGGAA
GGCGGGTGAGAAGAATGGTTGTTAGAGGAAGAGGGAGGAAGGGAGGAATC
TGAGTGCCGGCGGGTTTGACATTTGAATAGAGGGAGGAGGGTACAAGGAA
GTGAGACGGGCAGCGAGGAGGGGGAAAAATAGATACTCGGCTTTGAATGC
GAGGAGGAAGGAGGGGAGAGAGGCGAGAAGGAGGGCAAAGCGACTGTATA
AATGGATAGCTACACATATAAGTTTGTTCAAGAGGAGCTTTGAGTGAATT
ACCGTCACGGGACGCGGCGGAGCAGAGCCAGGCAGACTGATGTGCGCTGG
ATACAATCGGCAAGAGGAAAAGAAAGGAAACACAGTATGAAAACCTTGAT
ATTTCAGAACAAGTGGCCCAGGGATGGGAAGGCGCGTGCGACTACACCAT
CAACACTCCCTCGCGTACTGCTGCAGTTGTGACACAACCGGAGGGAGAAA
TAGAAACAGAACACAAGAAGAAAGACTCACCACGCACGCACAAAGG

protein sequence of jgi.p|Nanoce1779_2|596208

>mRNA_6750-protein ID=mRNA_6750-protein|Name=jgi.p|Nanoce1779_2|596208|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MPSSIAATVIYKRPASPAISVSSCVEASDLPSSVYCSGHPLLQHKMTLLR
DRKTTTRDFRHLMRELTLYLGYEATTEITLKPRVVEGTLGPVAGQKLSDK
IAIVPILRGGLGMVDAMTEILPNAAVYHIGMFSNHKSSSLPIQYYNRLPK
EKDKVADLTFVLDPLIATAGTCSATVSTLKKWGAKKIVVIGVVGSLQGLH
KLTQAHPDIRVHVASIDEAISEDGHILPGIGDASERLFTAYGVGEHDDET
SVHTVASAKKRKAGEKNGC*

mRNA from alignment at scaffold_17:4941..6555+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6750 ID=mRNA_6750|Name=jgi.p|Nanoce1779_2|596208|organism=Nannochloropsis oceanica|type=mRNA|length=1615bp|location=Sequence derived from alignment at scaffold_17:4941..6555+ (Nannochloropsis oceanica)
ACAGCTCAGACAATAGGCAATCAATTTTTAGGAAGCGCTCCACCTGAACC
GATCCACTCACTCGTACTTAGTCGATCAAGCCCAAGGCGTCATCTCGGTC
ATCCCCACCACCATCATGCCCTCCTCCATCGCCGCTACGGTCATCTACAA
GCGGCCGGCGTCGCCTGCCATCTCCGTATCCTCGTGCGTTGAAGCCAGTG
ACCTACCCTCCAGTGTATATTGCAGCGGCCACCCGGTAAGTCTCCTTTTG
GTTGGTGCGTATGTCCGTGCCTGGCACACAGTGCCATATGTATTGGTGAT
GGCTTCCCTCCTGATAGAAATGTTACAACTTCGGACCCTGTCTACCGTCA
TTCCGCCAGCCATTACATCAATCAACAGAGACACAACAATTCTTCATCAG
TTTAACTCCCACCATTCAAAACAAACACCCTCAACGACCTCTCCTTCCCT
TCAGCTGCTGCAACACAAAATGACGCTCCTCCGGGACCGCAAGACCACCA
CGCGGGACTTCCGGCACCTAATGCGAGAGCTCACTCTGTACCTAGGCTAT
GAAGCCACCACTGAAATCACGCTGAAGCCACGCGTAGTGGAGGGTACTCT
GGGGCCCGTGGCCGGGCAGAAGCTCTCGGACAAAATCGCCATCGTTCCAA
TCCTTCGAGGGGGTTTGGGAATGGTCGATGCCATGACGGAGATCTTGCCG
AATGCCGCTGTGTATCACATTGGTATGTTTAGTAACCATAAGTCCTCCAG
CTTGCCTATTCAATACTACAATCGCCTGCCCAAGGAGAAGGATAAAGTCG
CCGACCTCACCTTCGTCCTTGACCCTCTCATTGCCACTGCCGGGACCTGT
AGTGCCACGGTCTCGACCTTGAAAAAATGGGGCGCTAAGAAGATCGTGGT
GATTGGTGTGGTTGGTTCGCTGCAAGGGCTGCATAAGCTGACCCAGGCAC
ACCCTGATATTCGAGTGCATGTGGCGTCGATCGACGAGGCGATTTCAGAG
GACGGGCATATCCTGCCCGGGATTGGCGATGCGAGTGAAAGGTTGTTCAC
TGCCTATGGAGTGGGGGAGCATGACGACGAGACCTCAGTGCACACGGTGG
CCTCGGCCAAGAAGAGGAAGGCGGGTGAGAAGAATGGTTGTTAGAGGAAG
AGGGAGGAAGGGAGGAATCTGAGTGCCGGCGGGTTTGACATTTGAATAGA
GGGAGGAGGGTACAAGGAAGTGAGACGGGCAGCGAGGAGGGGGAAAAATA
GATACTCGGCTTTGAATGCGAGGAGGAAGGAGGGGAGAGAGGCGAGAAGG
AGGGCAAAGCGACTGTATAAATGGATAGCTACACATATAAGTTTGTTCAA
GAGGAGCTTTGAGTGAATTACCGTCACGGGACGCGGCGGAGCAGAGCCAG
GCAGACTGATGTGCGCTGGATACAATCGGCAAGAGGAAAAGAAAGGAAAC
ACAGTATGAAAACCTTGATATTTCAGAACAAGTGGCCCAGGGATGGGAAG
GCGCGTGCGACTACACCATCAACACTCCCTCGCGTACTGCTGCAGTTGTG
ACACAACCGGAGGGAGAAATAGAAACAGAACACAAGAAGAAAGACTCACC
ACGCACGCACAAAGG

Coding sequence (CDS) from alignment at scaffold_17:4941..6555+

>mRNA_6750 ID=mRNA_6750|Name=jgi.p|Nanoce1779_2|596208|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at scaffold_17:4941..6555+ (Nannochloropsis oceanica)
ATGCCCTCCTCCATCGCCGCTACGGTCATCTACAAGCGGCCGGCGTCGCC
TGCCATCTCCGTATCCTCGTGCGTTGAAGCCAGTGACCTACCCTCCAGTG
TATATTGCAGCGGCCACCCGCTGCTGCAACACAAAATGACGCTCCTCCGG
GACCGCAAGACCACCACGCGGGACTTCCGGCACCTAATGCGAGAGCTCAC
TCTGTACCTAGGCTATGAAGCCACCACTGAAATCACGCTGAAGCCACGCG
TAGTGGAGGGTACTCTGGGGCCCGTGGCCGGGCAGAAGCTCTCGGACAAA
ATCGCCATCGTTCCAATCCTTCGAGGGGGTTTGGGAATGGTCGATGCCAT
GACGGAGATCTTGCCGAATGCCGCTGTGTATCACATTGGTATGTTTAGTA
ACCATAAGTCCTCCAGCTTGCCTATTCAATACTACAATCGCCTGCCCAAG
GAGAAGGATAAAGTCGCCGACCTCACCTTCGTCCTTGACCCTCTCATTGC
CACTGCCGGGACCTGTAGTGCCACGGTCTCGACCTTGAAAAAATGGGGCG
CTAAGAAGATCGTGGTGATTGGTGTGGTTGGTTCGCTGCAAGGGCTGCAT
AAGCTGACCCAGGCACACCCTGATATTCGAGTGCATGTGGCGTCGATCGA
CGAGGCGATTTCAGAGGACGGGCATATCCTGCCCGGGATTGGCGATGCGA
GTGAAAGGTTGTTCACTGCCTATGGAGTGGGGGAGCATGACGACGAGACC
TCAGTGCACACGGTGGCCTCGGCCAAGAAGAGGAAGGCGGGTGAGAAGAA
TGGTTGTTAGATGCCCTCCTCCATCGCCGCTACGGTCATCTACAAGCGGC
CGGCGTCGCCTGCCATCTCCGTATCCTCGTGCGTTGAAGCCAGTGACCTA
CCCTCCAGTGTATATTGCAGCGGCCACCCGCTGCTGCAACACAAAATGAC
GCTCCTCCGGGACCGCAAGACCACCACGCGGGACTTCCGGCACCTAATGC
GAGAGCTCACTCTGTACCTAGGCTATGAAGCCACCACTGAAATCACGCTG
AAGCCACGCGTAGTGGAGGGTACTCTGGGGCCCGTGGCCGGGCAGAAGCT
CTCGGACAAAATCGCCATCGTTCCAATCCTTCGAGGGGGTTTGGGAATGG
TCGATGCCATGACGGAGATCTTGCCGAATGCCGCTGTGTATCACATTGGT
ATGTTTAGTAACCATAAGTCCTCCAGCTTGCCTATTCAATACTACAATCG
CCTGCCCAAGGAGAAGGATAAAGTCGCCGACCTCACCTTCGTCCTTGACC
CTCTCATTGCCACTGCCGGGACCTGTAGTGCCACGGTCTCGACCTTGAAA
AAATGGGGCGCTAAGAAGATCGTGGTGATTGGTGTGGTTGGTTCGCTGCA
AGGGCTGCATAAGCTGACCCAGGCACACCCTGATATTCGAGTGCATGTGG
CGTCGATCGACGAGGCGATTTCAGAGGACGGGCATATCCTGCCCGGGATT
GGCGATGCGAGTGAAAGGTTGTTCACTGCCTATGGAGTGGGGGAGCATGA
CGACGAGACCTCAGTGCACACGGTGGCCTCGGCCAAGAAGAGGAAGGCGG
GTGAGAAGAATGGTTGTTAG

Synonyms

Publications