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Properties
| Property Name | Value |
|---|
| TranscriptId | 591780 |
| Track | FilteredModels2 |
| ProteinId | 591694 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:701561..703654 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5192 ID=mRNA_5192|Name=jgi.p|Nanoce1779_2|591694|organism=Nannochloropsis oceanica|type=mRNA|length=1289bp
ACAGGACACCACCCTCTCAACCAACCACCACCTTTGGGACAAGATGAAAG
TCACCGCCGTGCTCTGTTTGCTCGCCGCCCCTCTTCTGGCATCCGCGTTT
ATTGCTCCCGCCCCCAAGGCCACCCGCGCCCGCGGCGTGATGTCGATGGC
GCAGTCGAAGGCCCTTCCTTTCCTCAAGGCTCCCGCGAAGCTGGATGGAA
GCCTTGCAGGAGACTTTGGTTTCGACCCCATGGGAATTTCGGACCAGGTC
GCCAACCTCAAATACGTCCGTGCGGCGGAGCTCAAGCACTGCCGCGTGGC
GATGCTTGGGTTCCTTGGCTGGGTTGTGCAGCAATATGTCCACCTTCCCG
GAGAGATCTACGCAGAGAGCAACCCTCTCAAGGCCCTGACCAGCGTGCCC
CTCTTAAGCCAGATTCAGATCTTCCTGTTCATCGGCGCGATTGAGCTGGC
GACATTAGACCAGACCTACACGGCGGACAAGCCGTGGGATTTGGGCTTTG
ACCCGCTTAACTTTAGCAAGGGCAAGTCCGAGCAGCAGATGAAGGATTTG
GAAGTGAAGGAGCTCAAAAACGGACGCGTTGCCATGATCGCCATCATGGG
TTTGATTGCCCAGACCCTTTACACCGGTGTTCCCCTTTTCTCTTAAATAT
GAGCAGCAACAGCAGCAGCAGCCGCCGCAGCGGCAGCAGCAGCAACCGCC
GAAGCCATAGCAGCAGTTGAAGAAAACAGCACGGAGGCAGAAAAAAAAAG
GCATGATTGAAGAAAGAGGCTAGTCGATGCTTCCGCGGTGAATTTCAATT
TCATTCAAGCATATTGTGCGTGCCTGTTCCCCCCATGTATACTCAGTGGG
TTATCAGGGTGGGTAGTGCTTAACAATTAGAGTGGTGGTCATAGAGGGAA
ATACCGAGGAATGATAAGGAGGTAGTGACATGTGACTGAAATGGTGATTT
GTGACCTAAATGTCTTTCTCCAATTCTTCTTTCCCGCACTGATCATGTGT
ATGTGTGAGTGTGTTTGTACTAGTGTGTGTTATTTTCTCTTCTCTTTTCT
TTCCGTAGCAGTACCATTTCCTACATATTTCAGCGTAGTCTTCAACGTGC
CCCTTGCCCGGTGAACAGAGAAGAGTAGCAAGGTGGGCTGCACACCTACC
CGTTCTGCCAAACAATCCCACGAGCAAAAGAATTAAACAAACCAAGAAAA
AGGAGATACGAAAGCAAATGAGGCAGCGCCAGTCGTAAGCTAATTAAAAA
AAACAACCCGTCTACTCTGTGCCCTCTCGTTCTTTCCAA back to topprotein sequence of jgi.p|Nanoce1779_2|591694 >mRNA_5192-protein ID=mRNA_5192-protein|Name=jgi.p|Nanoce1779_2|591694|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MKVTAVLCLLAAPLLASAFIAPAPKATRARGVMSMAQSKALPFLKAPAKL
DGSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQYVH
LPGEIYAESNPLKALTSVPLLSQIQIFLFIGAIELATLDQTYTADKPWDL
GFDPLNFSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTLYTGVPLFS
* back to topmRNA from alignment at scaffold_12:701561..703654- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5192 ID=mRNA_5192|Name=jgi.p|Nanoce1779_2|591694|organism=Nannochloropsis oceanica|type=mRNA|length=2094bp|location=Sequence derived from alignment at scaffold_12:701561..703654- (Nannochloropsis oceanica)
ACAGGACACCACCCTCTCAACCAACCACCACCTTTGGGACAAGATGAAAG
TCACCGCCGTGCTCTGTTTGCTCGCCGCCCCTCTTCTGGCATCCGCGTTT
ATTGCTCCCGCCCCCAAGGTACGCGTACAAGCTAGCCACTTGCCAGATTT
GATTCGCATGCTTCAGAATATGTCCGGAGGGCTTCAATATAGGCTGTCTT
TCGTAAGAAACCTTTTCACGCCGGCATAAGTGTATGATGAAAGACTTCAC
TTCGTCTGCCGATCTCGGACTTGCTGTCGTCGTCCTAACTTCTTTTCCTT
TTTTGTTCCACGCACAGGCCACCCGCGCCCGCGGCGTGATGTCGATGGCG
CAGTCGAAGGCCCTTCCTTTCCTCAAGGCTCCCGCGAAGCTGGATGGAAG
CCTTGCAGGAGACTTTGGTTTCGACCCCATGGGAATTTCGGACCAGGTAG
GCGAAGATTTTGGTAGGAGCCAGGGAGGAAAGGCGGTAGGAAGGGAGGGC
GCGGACCGAGACCAGTGGGTCACTGGTGAAGGTGTTTCCAAGCCGTTTGG
TTTTGCGAGAGCAAGTATAGTCAATTAAAACTTATCCTTATCCTCTCTTG
GTCGTCCCTCCTTACTCCCAGGTCGCCAACCTCAAATACGTCCGTGCGGC
GGAGCTCAAGCACTGCCGCGTGGCGATGCTTGGGTTCCTTGGCTGGGTTG
TGCAGCAATATGTCCACCTTCCCGGAGAGATCTACGCAGAGAGCAACCCT
CTCAAGGCCCTGACCAGCGTGCCCCTCTTAAGCCAGATTCAGATCTTCCT
GTTCATCGGCGCGATTGAGCTGGCGACATTAGACCAGACCTACACGGCGG
ACAAGCCGTGGGATTTGGGCTTTGACCCGCTTAACTTTAGCAAGGTGAGT
TAGTGAGTCAGCAAGCAAGTGCATTAGTGTGTACGCAAGAGTGTGAGAGT
GTGTGCGTGAGTGAGAGAGAATGTGTGCATATGAAGGTATTTTTGTCTTG
AGCTGGAAAAGGCATATCATAATTGTGATCCCCCTCCACGTTTCACAAAG
TTTACGGCTTTCTTTCTGGTCGTTTCTGAATCCCTGCAGTATCGGCCTTC
CTTATGCTCATGGTCCTCCTGCCTTTCCTCCAATTCAACCTACAGGGCAA
GTCCGAGCAGCAGATGAAGGATTTGGAAGTGAAGGAGCTCAAAAACGGAC
GCGTTGCCATGGTAGGTAATTCCTTCTTTTCTCTCCTCATTCAGTCCTGA
GTCTTCGAAGAAGAATTTCTATATCAGTTTTACTCTACTTTTTATTTTTT
TTACCTCAAATGTTTTTCCTTCCTGGCGAGGCTCAATAATCGTTTCCCTC
CCTCCTTCCCTCCCGCACTCCCTCCATCCCTCCCTCCCCAGATCGCCATC
ATGGGTTTGATTGCCCAGACCCTTTACACCGGTGTTCCCCTTTTCTCTTA
AATATGAGCAGCAACAGCAGCAGCAGCCGCCGCAGCGGCAGCAGCAGCAA
CCGCCGAAGCCATAGCAGCAGTTGAAGAAAACAGCACGGAGGCAGAAAAA
AAAAGGCATGATTGAAGAAAGAGGCTAGTCGATGCTTCCGCGGTGAATTT
CAATTTCATTCAAGCATATTGTGCGTGCCTGTTCCCCCCATGTATACTCA
GTGGGTTATCAGGGTGGGTAGTGCTTAACAATTAGAGTGGTGGTCATAGA
GGGAAATACCGAGGAATGATAAGGAGGTAGTGACATGTGACTGAAATGGT
GATTTGTGACCTAAATGTCTTTCTCCAATTCTTCTTTCCCGCACTGATCA
TGTGTATGTGTGAGTGTGTTTGTACTAGTGTGTGTTATTTTCTCTTCTCT
TTTCTTTCCGTAGCAGTACCATTTCCTACATATTTCAGCGTAGTCTTCAA
CGTGCCCCTTGCCCGGTGAACAGAGAAGAGTAGCAAGGTGGGCTGCACAC
CTACCCGTTCTGCCAAACAATCCCACGAGCAAAAGAATTAAACAAACCAA
GAAAAAGGAGATACGAAAGCAAATGAGGCAGCGCCAGTCGTAAGCTAATT
AAAAAAAACAACCCGTCTACTCTGTGCCCTCTCGTTCTTTCCAA back to topCoding sequence (CDS) from alignment at scaffold_12:701561..703654- >mRNA_5192 ID=mRNA_5192|Name=jgi.p|Nanoce1779_2|591694|organism=Nannochloropsis oceanica|type=CDS|length=3015bp|location=Sequence derived from alignment at scaffold_12:701561..703654- (Nannochloropsis oceanica)
ATCGCCATCATGGGTTTGATTGCCCAGACCCTTTACACCGGTGTTCCCCT
TTTCTCTTAAGGCAAGTCCGAGCAGCAGATGAAGGATTTGGAAGTGAAGG
AGCTCAAAAACGGACGCGTTGCCATGGTCGCCAACCTCAAATACGTCCGT
GCGGCGGAGCTCAAGCACTGCCGCGTGGCGATGCTTGGGTTCCTTGGCTG
GGTTGTGCAGCAATATGTCCACCTTCCCGGAGAGATCTACGCAGAGAGCA
ACCCTCTCAAGGCCCTGACCAGCGTGCCCCTCTTAAGCCAGATTCAGATC
TTCCTGTTCATCGGCGCGATTGAGCTGGCGACATTAGACCAGACCTACAC
GGCGGACAAGCCGTGGGATTTGGGCTTTGACCCGCTTAACTTTAGCAAGG
CCACCCGCGCCCGCGGCGTGATGTCGATGGCGCAGTCGAAGGCCCTTCCT
TTCCTCAAGGCTCCCGCGAAGCTGGATGGAAGCCTTGCAGGAGACTTTGG
TTTCGACCCCATGGGAATTTCGGACCAGATGAAAGTCACCGCCGTGCTCT
GTTTGCTCGCCGCCCCTCTTCTGGCATCCGCGTTTATTGCTCCCGCCCCC
AAGATCGCCATCATGGGTTTGATTGCCCAGACCCTTTACACCGGTGTTCC
CCTTTTCTCTTAAGGCAAGTCCGAGCAGCAGATGAAGGATTTGGAAGTGA
AGGAGCTCAAAAACGGACGCGTTGCCATGGTCGCCAACCTCAAATACGTC
CGTGCGGCGGAGCTCAAGCACTGCCGCGTGGCGATGCTTGGGTTCCTTGG
CTGGGTTGTGCAGCAATATGTCCACCTTCCCGGAGAGATCTACGCAGAGA
GCAACCCTCTCAAGGCCCTGACCAGCGTGCCCCTCTTAAGCCAGATTCAG
ATCTTCCTGTTCATCGGCGCGATTGAGCTGGCGACATTAGACCAGACCTA
CACGGCGGACAAGCCGTGGGATTTGGGCTTTGACCCGCTTAACTTTAGCA
AGGCCACCCGCGCCCGCGGCGTGATGTCGATGGCGCAGTCGAAGGCCCTT
CCTTTCCTCAAGGCTCCCGCGAAGCTGGATGGAAGCCTTGCAGGAGACTT
TGGTTTCGACCCCATGGGAATTTCGGACCAGATGAAAGTCACCGCCGTGC
TCTGTTTGCTCGCCGCCCCTCTTCTGGCATCCGCGTTTATTGCTCCCGCC
CCCAAGATCGCCATCATGGGTTTGATTGCCCAGACCCTTTACACCGGTGT
TCCCCTTTTCTCTTAAGGCAAGTCCGAGCAGCAGATGAAGGATTTGGAAG
TGAAGGAGCTCAAAAACGGACGCGTTGCCATGGTCGCCAACCTCAAATAC
GTCCGTGCGGCGGAGCTCAAGCACTGCCGCGTGGCGATGCTTGGGTTCCT
TGGCTGGGTTGTGCAGCAATATGTCCACCTTCCCGGAGAGATCTACGCAG
AGAGCAACCCTCTCAAGGCCCTGACCAGCGTGCCCCTCTTAAGCCAGATT
CAGATCTTCCTGTTCATCGGCGCGATTGAGCTGGCGACATTAGACCAGAC
CTACACGGCGGACAAGCCGTGGGATTTGGGCTTTGACCCGCTTAACTTTA
GCAAGGCCACCCGCGCCCGCGGCGTGATGTCGATGGCGCAGTCGAAGGCC
CTTCCTTTCCTCAAGGCTCCCGCGAAGCTGGATGGAAGCCTTGCAGGAGA
CTTTGGTTTCGACCCCATGGGAATTTCGGACCAGATGAAAGTCACCGCCG
TGCTCTGTTTGCTCGCCGCCCCTCTTCTGGCATCCGCGTTTATTGCTCCC
GCCCCCAAGATCGCCATCATGGGTTTGATTGCCCAGACCCTTTACACCGG
TGTTCCCCTTTTCTCTTAAGGCAAGTCCGAGCAGCAGATGAAGGATTTGG
AAGTGAAGGAGCTCAAAAACGGACGCGTTGCCATGGTCGCCAACCTCAAA
TACGTCCGTGCGGCGGAGCTCAAGCACTGCCGCGTGGCGATGCTTGGGTT
CCTTGGCTGGGTTGTGCAGCAATATGTCCACCTTCCCGGAGAGATCTACG
CAGAGAGCAACCCTCTCAAGGCCCTGACCAGCGTGCCCCTCTTAAGCCAG
ATTCAGATCTTCCTGTTCATCGGCGCGATTGAGCTGGCGACATTAGACCA
GACCTACACGGCGGACAAGCCGTGGGATTTGGGCTTTGACCCGCTTAACT
TTAGCAAGGCCACCCGCGCCCGCGGCGTGATGTCGATGGCGCAGTCGAAG
GCCCTTCCTTTCCTCAAGGCTCCCGCGAAGCTGGATGGAAGCCTTGCAGG
AGACTTTGGTTTCGACCCCATGGGAATTTCGGACCAGATGAAAGTCACCG
CCGTGCTCTGTTTGCTCGCCGCCCCTCTTCTGGCATCCGCGTTTATTGCT
CCCGCCCCCAAGATCGCCATCATGGGTTTGATTGCCCAGACCCTTTACAC
CGGTGTTCCCCTTTTCTCTTAAGGCAAGTCCGAGCAGCAGATGAAGGATT
TGGAAGTGAAGGAGCTCAAAAACGGACGCGTTGCCATGGTCGCCAACCTC
AAATACGTCCGTGCGGCGGAGCTCAAGCACTGCCGCGTGGCGATGCTTGG
GTTCCTTGGCTGGGTTGTGCAGCAATATGTCCACCTTCCCGGAGAGATCT
ACGCAGAGAGCAACCCTCTCAAGGCCCTGACCAGCGTGCCCCTCTTAAGC
CAGATTCAGATCTTCCTGTTCATCGGCGCGATTGAGCTGGCGACATTAGA
CCAGACCTACACGGCGGACAAGCCGTGGGATTTGGGCTTTGACCCGCTTA
ACTTTAGCAAGGCCACCCGCGCCCGCGGCGTGATGTCGATGGCGCAGTCG
AAGGCCCTTCCTTTCCTCAAGGCTCCCGCGAAGCTGGATGGAAGCCTTGC
AGGAGACTTTGGTTTCGACCCCATGGGAATTTCGGACCAGATGAAAGTCA
CCGCCGTGCTCTGTTTGCTCGCCGCCCCTCTTCTGGCATCCGCGTTTATT
GCTCCCGCCCCCAAG back to top
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