jgi.p|Nanoce1779_2|528173, mRNA_4513 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|528173
Unique Name	mRNA_4513
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1626
Alignment location	scaffold_10:782753..784454 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	528259
Track	FilteredModels2
ProteinId	528173

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:782753..784454 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528173	gene_4513	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528173	mRNA_4513-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4513	CDS_4513	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:782753..784454+
coding sequence from alignment at scaffold_10:782753..784454+

mRNA sequence

>mRNA_4513 ID=mRNA_4513|Name=jgi.p|Nanoce1779_2|528173|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp
ATGCTTCGGATAACACTCCTTCCCCTCCCCTCACAGGTGGTGCTTTCCGG
TGCAATCTGCACCAAAAATGGCAAGGCACTGCTTTCCCGACAATTTGTGG
AGATGAGCCGCATCCGCATCGAGGGATTGTTGGCCGCCTTCCCCAAGCTG
CTGGGCTCGGGGGAAGAGAAGCAGCACACTTTTATCGAGACCGAGACTGT
CCGCTACGTCTACCAGCCTATCGAAAACCTTTTCCTGCTCCTAATAACCA
ACAAGGCCTCCAACATCGTCGAAGACTTAGAGACCCTCCGTCTGTTGTCC
AAGATTGTCCCCGAGGTGGCGGGGGGCGTATCCGAAGAACGGGTAATCGA
CAAGTGCTTCGAGCTCGTCTTCGCCTTTGACGAGGTCCTAACGACGGGCG
GATACCGCGAAAGCGTATCCCTGCAACAAATTAAGACTAACATGGAGATG
GACTCGCATGAGGAAAAACTTGCATTGATGATCAAGCAGAGCAAGATGGA
CTCAGCCAAGGACCAGGCCGCTCGTCAGGCCAAGGCCATCCGGGAACGTC
AACGCGAGCTGGCCCGTGACCGGCTGGGGGGGGCCCGAGGAGGGTTTGGA
GGGGTGCCGGGGGGAGGGTTCGGGGCTTCGACCGGTGTGTCGTCGTCCTC
GTATATGCCCGGCACGGTGGACAGCAACTCGGCGTCCATATTGGAAACGG
CCCCGACAAAGATTGCGAGCAAGGGGATGAAGCTTGGGGCGCCGAGCAAG
GCCTCGACGATGCTTGACTCGCTTGTACAGGAGGATAATTTGAGTCATAT
TGCTACTACCACTGCGATTGCCCCCACTAGCACAAGGGGAGGGGCAGGTG
GGGAGGCTGCGGTTCCAGCCCCTGTCATCCAGCACCAGCCCATTCAGTTG
GTAGTGGAAGAGAAGATCATCGCGCACCTGACGCGGGATGGGGCGGTGGA
TGCCTTTGAAGTTAAGGGGTCCTTGACGCTAACAGCGACCACCGAGGCGG
CAGCTCGGTCGAAGGTGGTGCTCGGGGAGGGCGCGGGGGGAGGCATTGTG
CCGGTGGGTTTGAATTTTCAGACCCACCCGAAGGTAAATAAGCAGGAGTA
TGACTCTAGCAAGGTTTTGGTGCTGAAAGATACGAATAAGGGCTTTCCTG
TCGGGCGCCCTGTTGGGGTCCTCCGGTGGAGCTACTCGTCCACAGATGAG
AGCATGGTGCCACTTACGCTCAACTGCTGGCCAGAAGAGGAAGGGCAGGG
GAAGATGAACATTAGCATTGAATATCAGATGAATGGTCAGAACCGGGAAT
TGCACGATGTGAATATTTCGATCCCCTTGGGGACGGCCGAGCCTCCGCAA
GTGGCGGCGGTGGACGGTACTTTCAGGCATGACCCGCGGGAGCAGCGGCT
GGTCTGGCACATGGATTTGGTCGATTCTTCCAACGCGAGTGGGGCGTTGG
AATTTGTAGTGGCGGGGAGGGATGCAGGGGCTTTCTTTCCGATCATCGTC
TCGTTTGCGAGTCAAATGCTGTATGCCGATGTGGCGGTGTCGGCAGTTAC
CGGATTGGAGAATGCCGCCCCAGTTCCCTACAGTCTGTCCAAGAGCCTGA
CGCCTGATTCGTACATCGTGGGCTAG

protein sequence of jgi.p|Nanoce1779_2|528173

>mRNA_4513-protein ID=mRNA_4513-protein|Name=jgi.p|Nanoce1779_2|528173|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp
MLRITLLPLPSQVVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKL
LGSGEEKQHTFIETETVRYVYQPIENLFLLLITNKASNIVEDLETLRLLS
KIVPEVAGGVSEERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEM
DSHEEKLALMIKQSKMDSAKDQAARQAKAIRERQRELARDRLGGARGGFG
GVPGGGFGASTGVSSSSYMPGTVDSNSASILETAPTKIASKGMKLGAPSK
ASTMLDSLVQEDNLSHIATTTAIAPTSTRGGAGGEAAVPAPVIQHQPIQL
VVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAARSKVVLGEGAGGGIV
PVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGRPVGVLRWSYSSTDE
SMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHDVNISIPLGTAEPPQ
VAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFVVAGRDAGAFFPIIV
SFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPDSYIVG*

mRNA from alignment at scaffold_10:782753..784454+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4513 ID=mRNA_4513|Name=jgi.p|Nanoce1779_2|528173|organism=Nannochloropsis oceanica|type=mRNA|length=1702bp|location=Sequence derived from alignment at scaffold_10:782753..784454+ (Nannochloropsis oceanica)
ATGCTTCGGATAACACTCCTTCCCCTCCCCTCACAGGTGGTGCTTTCCGG
TGCAATCTGCACCAAAAATGGCAAGGCACTGCTTTCCCGACAATTTGTGG
AGATGAGCCGCATCCGCATCGAGGGATTGTTGGCCGCCTTCCCCAAGCTG
CTGGGCTCGGGGGAAGAGAAGCAGCACACTTTTATCGAGACCGAGACTGT
CCGCTACGTCTACCAGCCTATCGAAAACCTTTTCCTGCTCCTAATAACCA
ACAAGGCCTCCAACATCGTCGAAGACTTAGAGACCCTCCGTCTGTTGTCC
AAGATTGTCCCCGAGGTGGCGGGGGGCGTATCCGAAGAACGGGTAATCGA
CAAGTGCTTCGAGCTCGTCTTCGCCTTTGACGAGGTCCTAACGACGGGCG
GATACCGCGAAAGCGTATCCCTGCAACAAATTAAGACTAACATGGAGATG
GACTCGCATGAGGAAAAACTTGCATTGATGATCAAGCAGAGCAAGATGGA
CTCAGCCAAGGACCAGGCCGCTCGTCAGGCCAAGGCCATCCGGGAACGTC
AACGCGAGCTGGCCCGTGACCGGCTGGGGGGGGCCCGAGGTGGCGCGGGG
GGGGGCTTACCAGGGCATTGGCGGCGGCGATGGTGGTGGTGATTACATGG
GTAGGGACGGCGTAGGAGGGTTTGGAGGGGTGCCGGGGGGAGGGTTCGGG
GCTTCGACCGGTGTGTCGTCGTCCTCGTATATGCCCGGCACGGTGGACAG
CAACTCGGCGTCCATATTGGAAACGGCCCCGACAAAGATTGCGAGCAAGG
GGATGAAGCTTGGGGCGCCGAGCAAGGCCTCGACGATGCTTGACTCGCTT
GTACAGGAGGATAATTTGAGTCATATTGCTACTACCACTGCGATTGCCCC
CACTAGCACAAGGGGAGGGGCAGGTGGGGAGGCTGCGGTTCCAGCCCCTG
TCATCCAGCACCAGCCCATTCAGTTGGTAGTGGAAGAGAAGATCATCGCG
CACCTGACGCGGGATGGGGCGGTGGATGCCTTTGAAGTTAAGGGGTCCTT
GACGCTAACAGCGACCACCGAGGCGGCAGCTCGGTCGAAGGTGGTGCTCG
GGGAGGGCGCGGGGGGAGGCATTGTGCCGGTGGGTTTGAATTTTCAGACC
CACCCGAAGGTAAATAAGCAGGAGTATGACTCTAGCAAGGTTTTGGTGCT
GAAAGATACGAATAAGGGCTTTCCTGTCGGGCGCCCTGTTGGGGTCCTCC
GGTGGAGCTACTCGTCCACAGATGAGAGCATGGTGCCACTTACGCTCAAC
TGCTGGCCAGAAGAGGAAGGGCAGGGGAAGATGAACATTAGCATTGAATA
TCAGATGAATGGTCAGAACCGGGAATTGCACGATGTGAATATTTCGATCC
CCTTGGGGACGGCCGAGCCTCCGCAAGTGGCGGCGGTGGACGGTACTTTC
AGGCATGACCCGCGGGAGCAGCGGCTGGTCTGGCACATGGATTTGGTCGA
TTCTTCCAACGCGAGTGGGGCGTTGGAATTTGTAGTGGCGGGGAGGGATG
CAGGGGCTTTCTTTCCGATCATCGTCTCGTTTGCGAGTCAAATGCTGTAT
GCCGATGTGGCGGTGTCGGCAGTTACCGGATTGGAGAATGCCGCCCCAGT
TCCCTACAGTCTGTCCAAGAGCCTGACGCCTGATTCGTACATCGTGGGCT
AG

Coding sequence (CDS) from alignment at scaffold_10:782753..784454+

>mRNA_4513 ID=mRNA_4513|Name=jgi.p|Nanoce1779_2|528173|organism=Nannochloropsis oceanica|type=CDS|length=3252bp|location=Sequence derived from alignment at scaffold_10:782753..784454+ (Nannochloropsis oceanica)
ATGCTTCGGATAACACTCCTTCCCCTCCCCTCACAGGTGGTGCTTTCCGG
TGCAATCTGCACCAAAAATGGCAAGGCACTGCTTTCCCGACAATTTGTGG
AGATGAGCCGCATCCGCATCGAGGGATTGTTGGCCGCCTTCCCCAAGCTG
CTGGGCTCGGGGGAAGAGAAGCAGCACACTTTTATCGAGACCGAGACTGT
CCGCTACGTCTACCAGCCTATCGAAAACCTTTTCCTGCTCCTAATAACCA
ACAAGGCCTCCAACATCGTCGAAGACTTAGAGACCCTCCGTCTGTTGTCC
AAGATTGTCCCCGAGGTGGCGGGGGGCGTATCCGAAGAACGGGTAATCGA
CAAGTGCTTCGAGCTCGTCTTCGCCTTTGACGAGGTCCTAACGACGGGCG
GATACCGCGAAAGCGTATCCCTGCAACAAATTAAGACTAACATGGAGATG
GACTCGCATGAGGAAAAACTTGCATTGATGATCAAGCAGAGCAAGATGGA
CTCAGCCAAGGACCAGGCCGCTCGTCAGGCCAAGGCCATCCGGGAACGTC
AACGCGAGCTGGCCCGTGACCGGCTGGGGGGGGCCCGAGGAGGGTTTGGA
GGGGTGCCGGGGGGAGGGTTCGGGGCTTCGACCGGTGTGTCGTCGTCCTC
GTATATGCCCGGCACGGTGGACAGCAACTCGGCGTCCATATTGGAAACGG
CCCCGACAAAGATTGCGAGCAAGGGGATGAAGCTTGGGGCGCCGAGCAAG
GCCTCGACGATGCTTGACTCGCTTGTACAGGAGGATAATTTGAGTCATAT
TGCTACTACCACTGCGATTGCCCCCACTAGCACAAGGGGAGGGGCAGGTG
GGGAGGCTGCGGTTCCAGCCCCTGTCATCCAGCACCAGCCCATTCAGTTG
GTAGTGGAAGAGAAGATCATCGCGCACCTGACGCGGGATGGGGCGGTGGA
TGCCTTTGAAGTTAAGGGGTCCTTGACGCTAACAGCGACCACCGAGGCGG
CAGCTCGGTCGAAGGTGGTGCTCGGGGAGGGCGCGGGGGGAGGCATTGTG
CCGGTGGGTTTGAATTTTCAGACCCACCCGAAGGTAAATAAGCAGGAGTA
TGACTCTAGCAAGGTTTTGGTGCTGAAAGATACGAATAAGGGCTTTCCTG
TCGGGCGCCCTGTTGGGGTCCTCCGGTGGAGCTACTCGTCCACAGATGAG
AGCATGGTGCCACTTACGCTCAACTGCTGGCCAGAAGAGGAAGGGCAGGG
GAAGATGAACATTAGCATTGAATATCAGATGAATGGTCAGAACCGGGAAT
TGCACGATGTGAATATTTCGATCCCCTTGGGGACGGCCGAGCCTCCGCAA
GTGGCGGCGGTGGACGGTACTTTCAGGCATGACCCGCGGGAGCAGCGGCT
GGTCTGGCACATGGATTTGGTCGATTCTTCCAACGCGAGTGGGGCGTTGG
AATTTGTAGTGGCGGGGAGGGATGCAGGGGCTTTCTTTCCGATCATCGTC
TCGTTTGCGAGTCAAATGCTGTATGCCGATGTGGCGGTGTCGGCAGTTAC
CGGATTGGAGAATGCCGCCCCAGTTCCCTACAGTCTGTCCAAGAGCCTGA
CGCCTGATTCGTACATCGTGGGCTAGATGCTTCGGATAACACTCCTTCCC
CTCCCCTCACAGGTGGTGCTTTCCGGTGCAATCTGCACCAAAAATGGCAA
GGCACTGCTTTCCCGACAATTTGTGGAGATGAGCCGCATCCGCATCGAGG
GATTGTTGGCCGCCTTCCCCAAGCTGCTGGGCTCGGGGGAAGAGAAGCAG
CACACTTTTATCGAGACCGAGACTGTCCGCTACGTCTACCAGCCTATCGA
AAACCTTTTCCTGCTCCTAATAACCAACAAGGCCTCCAACATCGTCGAAG
ACTTAGAGACCCTCCGTCTGTTGTCCAAGATTGTCCCCGAGGTGGCGGGG
GGCGTATCCGAAGAACGGGTAATCGACAAGTGCTTCGAGCTCGTCTTCGC
CTTTGACGAGGTCCTAACGACGGGCGGATACCGCGAAAGCGTATCCCTGC
AACAAATTAAGACTAACATGGAGATGGACTCGCATGAGGAAAAACTTGCA
TTGATGATCAAGCAGAGCAAGATGGACTCAGCCAAGGACCAGGCCGCTCG
TCAGGCCAAGGCCATCCGGGAACGTCAACGCGAGCTGGCCCGTGACCGGC
TGGGGGGGGCCCGAGGAGGGTTTGGAGGGGTGCCGGGGGGAGGGTTCGGG
GCTTCGACCGGTGTGTCGTCGTCCTCGTATATGCCCGGCACGGTGGACAG
CAACTCGGCGTCCATATTGGAAACGGCCCCGACAAAGATTGCGAGCAAGG
GGATGAAGCTTGGGGCGCCGAGCAAGGCCTCGACGATGCTTGACTCGCTT
GTACAGGAGGATAATTTGAGTCATATTGCTACTACCACTGCGATTGCCCC
CACTAGCACAAGGGGAGGGGCAGGTGGGGAGGCTGCGGTTCCAGCCCCTG
TCATCCAGCACCAGCCCATTCAGTTGGTAGTGGAAGAGAAGATCATCGCG
CACCTGACGCGGGATGGGGCGGTGGATGCCTTTGAAGTTAAGGGGTCCTT
GACGCTAACAGCGACCACCGAGGCGGCAGCTCGGTCGAAGGTGGTGCTCG
GGGAGGGCGCGGGGGGAGGCATTGTGCCGGTGGGTTTGAATTTTCAGACC
CACCCGAAGGTAAATAAGCAGGAGTATGACTCTAGCAAGGTTTTGGTGCT
GAAAGATACGAATAAGGGCTTTCCTGTCGGGCGCCCTGTTGGGGTCCTCC
GGTGGAGCTACTCGTCCACAGATGAGAGCATGGTGCCACTTACGCTCAAC
TGCTGGCCAGAAGAGGAAGGGCAGGGGAAGATGAACATTAGCATTGAATA
TCAGATGAATGGTCAGAACCGGGAATTGCACGATGTGAATATTTCGATCC
CCTTGGGGACGGCCGAGCCTCCGCAAGTGGCGGCGGTGGACGGTACTTTC
AGGCATGACCCGCGGGAGCAGCGGCTGGTCTGGCACATGGATTTGGTCGA
TTCTTCCAACGCGAGTGGGGCGTTGGAATTTGTAGTGGCGGGGAGGGATG
CAGGGGCTTTCTTTCCGATCATCGTCTCGTTTGCGAGTCAAATGCTGTAT
GCCGATGTGGCGGTGTCGGCAGTTACCGGATTGGAGAATGCCGCCCCAGT
TCCCTACAGTCTGTCCAAGAGCCTGACGCCTGATTCGTACATCGTGGGCT
AG

Synonyms

Publications