jgi.p|Nanoce1779_2|585124, mRNA_3265 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585124
Unique NamemRNA_3265
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1436
Alignment locationscaffold_7:1053366..1055766 +

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Properties
Property NameValue
TranscriptId585210
TrackFilteredModels2
ProteinId585124
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1053366..1055766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585124gene_3265Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585124mRNA_3265-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3265CDS_3265Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3265 ID=mRNA_3265|Name=jgi.p|Nanoce1779_2|585124|organism=Nannochloropsis oceanica|type=mRNA|length=1436bp
AGGCGATCAACCCAAGGCATGCAGGTCAGATAAAGCCTTCTTCGAGCCTA
CAAAGGATGCGGCAGAATATAAATCGACTCGCAAGTGATGGCAGCCTTAG
GAAGAGGCCAAGAAGGCTGTCAAATCAGGCGCTAGCTAAGCGGCAGCGAA
TCGAGGACGGAGGGACGTGTGGGGGTGCGACGGCTTCGAAAAAAGGAAGC
CTGGTCGGCCCAAGCAGGGAATATCTACGACAATATCACCACAATCCGCA
TGAATTCACTCTGCCTTAATTGCTTTAATCAATCCCGCTTCTAATGCACG
CCGTCTGACTGCGTCGAAGTGCCTGGTTGCTGCAGCGCCTTGACTCGCCG
AAGACCTCTCTTTTCTGGGCGAGAGAGAGGGGCCTCCTGGAGGCGGCCCA
CATGCAAAGTAAAACCCTGAGTGTTGAGAACTCCTGATACACGTGCTTGT
TTCACCTTCACACAGCCTCCCTACAAGCACACGAGATCCTTGGTCTCTGA
CGCCCGTCCATTTCGAGACGCACACACGCCAAGTCGGCAGCCACTATACA
CGCCCATCGTGATGCAGAAAGCCTGCGTAAGAAGGGGACCCGAGGCCAAG
CAATAAGTCCGCATTCCACTCTTCCGCCGCATTCCACAAGCCACTCATTG
CGCCGGTGGAAGGCTAATCGACATCCATGGGTGCTCAAGCCTTTGACCCC
AAGCTGATAGTCTACCAGATCATCGCCCTTCAGTGCCTGTACTATTTGGT
CGAGGGGGGAATCTTGATGGGATTTAATTTAATTTTCGGTACGGACGTGT
CCATGACACAAATATTCACGCCCAAGGGTCTGGAAATAGGATCGGCCGAA
GGGCTTCTGAACGTGATGGCGTTGTTACTGTCCTTTGTGGCGGGCTCGGT
GCTTTTGTGTGTGGTAGTGGAGCGGGCGAAGAAGTGCCTCGACTTCACCG
TAACGCTATTCTTTTTCCACTTTCTCGCTTGCGGTGTGTACGAGTCATTC
CCCTCCACCCTCCTCTGGTGGGTCTGCCACCTTGTGGGCCTCTCCGTCAT
GACCTTGCTTGGCGAGCACCTATGTGCCCGCAGCGAGCTCCGAGACATCC
CCCTCTTCGTAATCGACCAAACCACAGGATGACGTATTGAATCGTCTCTT
GTCGTGGACAAGAACATAAGAGTCATGATGAATAAATAAGAGAGAGCATG
TCTATGAGAGCGAGATGGCCTATCTTTCTCCTACACCCTGCCTACCCCTA
CCTAAGACCCCTGTCCCTGTTTTTGAAAATAAAATGAGTCAAAAATAATC
AAAAGAAATGAATATGAAAAACCTGACGACCTGCGGTACTACTTTTTGGA
AAAAAAAGGCATGACAATCGAATTTATGTATGGGTATGAATTCCATCACA
AATAGTTGACAACGAGAAACAACCAACTCTCCTTAG
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protein sequence of jgi.p|Nanoce1779_2|585124

>mRNA_3265-protein ID=mRNA_3265-protein|Name=jgi.p|Nanoce1779_2|585124|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MGAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPK
GLEIGSAEGLLNVMALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFL
ACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPLFVIDQTT
G*
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mRNA from alignment at scaffold_7:1053366..1055766+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3265 ID=mRNA_3265|Name=jgi.p|Nanoce1779_2|585124|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp|location=Sequence derived from alignment at scaffold_7:1053366..1055766+ (Nannochloropsis oceanica)
AGGCGATCAACCCAAGGCATGCAGGTCAGATAAAGCCTTCTTCGAGCCTA CAAAGGATGCGGCAGAATATAAATCGACTCGCAAGTGATGGCAGCCTTAG GAAGAGGCCAAGAAGGCTGTCAAATCAGGCGCTAGCTAAGCGGCAGCGAA TCGAGGACGGAGGGACGTGTGGGGGTGCGACGGCTTCGAAAAAAGGAAGC CTGGTCGGCCCAAGCAGGGAATATCTACGACAATATCACCACAATCCGCA TGAATTCACTCTGCCTTAATTGCTTTAATCAATCCCGCTTCTAATGCACG CCGTCTGACTGCGTCGAAGTGCCTGGTTGCTGCAGCGCCTTGACTCGCCG AAGACCTCTCTTTTCTGGGCGAGAGAGAGGGGCCTCCTGGAGGCGGCCCA CATGCAAAGTAAAACCCTGAGTGTTGAGAACTCCTGATACACGTGCTTGT TTCACCTTCACACAGCCTCCCTACAAGCACACGAGATCCTTGGTCTCTGA CGCCCGTCCATTTCGAGACGCACACACGCCAAGTCGGCAGCCACTATACA CGCCCATCGTGATGCAGAAAGCCTGCGTAAGAAGGGGACCCGAGGCCAAG CAATAAGTCCGCATTCCACTCTTCCGCCGCATTCCACAAGCCACTCATTG CGCCGGTGGAAGGCTAATCGACATCCATGGGTGCTCAAGGTACGTTTTTG GAGAGGGGTGTATGCAGGGCAATGTTACTATTCCCCTTTGCCTTCCCGCG TTGCTCATCCCACCCTTTTCTACACACATTTTCACACCCCTTTCCTGCCA CCTTCCTTACCGCACTTCCACCCGTGCCTTTACTGCCTCTCTCCCTTCCC GCTCTTCCCGACCACCCCAAACCCCCACTACCCCACAACAACAACAACAC CCGTATCCGCACCACCGACCCATCCCTTCTTGCCCCCCCGGCCCGTCCAT CCCCCCTTCCCCTCGTTCTACTCCCACCCCAGCCTTTGACCCCAAGCTGA TAGTCTACCAGATCATCGCCCTTCAGGTATTCTATTTGTAGCTCTTCATC CTACCCTTTGCATCATCCCCACATGTTTTGACTCATTCTTTCCTCCCTCG CTCCCTCGCTCCCTCGCTCCCTTGCTCGATTCGCTCTCTTCGTTGCGCCA GTGCCTGTACTATTTGGTCGAGGGGGGAATCTTGATGGGATTTAATTTAA TTTTCGGTACGGACGTGTCCATGACACAAATATTCACGCCCAAGGGTCTG GAAATAGGATCGGCCGAAGGGCTTCTGAACGTGATGGCGTTGTTACTGTC CTTTGTGGCGGGGTAAGAAAGGAGGGAAAAAGAGAGGGAAGGATCGCGCA TCCAAACATGCTCATCCACGGTTTCCATAGATTAGCTCAACTATTCAAAT TAGATTTATTTTTTTCCTCTCCCATTTCATACGGATGAAACCAACAGCTC GGTGCTTTTGTGTGTGGTAGTGGAGCGGGCGAAGAAGTGCCTCGACTTCA CCGTAACGCTATTCTTTTTCCACTTTCTCGCTTGCGGTGTGTACGAGGTA AGGCGAAACTGGAATCGGGAACTTGTAGTGCATGACGACTATCCCCCTTC TACGCTGAAACACATGATTAGACATTGTGCGGTGTTATTAACATGTGAGG GCGGAAGGGAGGAAAAGCCGACCTGCCCATAAATGAAACACCGGGATTCT GATGTTTTCCCTAATCTATTCTACCCACAGTCATTCCCCTCCACCCTCCT CTGGTGGGTCTGCCACCTTGTGGGCCTCTCCGTCATGACCTTGCTTGGTA CGTACAAAGCTTGAAACAAAGCACCCAGTTGTTGTTGTGACGGCCATGTT TTTGTGCCATTTGCTTTTTCTCGTGTTTCACTCTGTACTTACTGCTGATT TCTACGTATTCTCGTTCCATCAACCACCACCAATAGCTATCTCCAAAATT ATAATGCGTTTTCTATTTCATTCTCATAAGCACCCTTCCTCCCTCCCTCC CTTGCTTCCTCCCTCATTCTCCAAAGGCGAGCACCTATGTGCCCGCAGCG AGCTCCGAGACATCCCCCTCTTCGTAATCGACCAAACCACAGGATGACGT ATTGAATCGTCTCTTGTCGTGGACAAGAACATAAGAGTCATGATGAATAA ATAAGAGAGAGCATGTCTATGAGAGCGAGATGGCCTATCTTTCTCCTACA CCCTGCCTACCCCTACCTAAGACCCCTGTCCCTGTTTTTGAAAATAAAAT GAGTCAAAAATAATCAAAAGAAATGAATATGAAAAACCTGACGACCTGCG GTACTACTTTTTGGAAAAAAAAGGCATGACAATCGAATTTATGTATGGGT ATGAATTCCATCACAAATAGTTGACAACGAGAAACAACCAACTCTCCTTA G
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Coding sequence (CDS) from alignment at scaffold_7:1053366..1055766+

>mRNA_3265 ID=mRNA_3265|Name=jgi.p|Nanoce1779_2|585124|organism=Nannochloropsis oceanica|type=CDS|length=2736bp|location=Sequence derived from alignment at scaffold_7:1053366..1055766+ (Nannochloropsis oceanica)
ATGGGTGCTCAAGCCTTTGACCCCAAGCTGATAGTCTACCAGATCATCGC
CCTTCAGTGCCTGTACTATTTGGTCGAGGGGGGAATCTTGATGGGATTTA
ATTTAATTTTCGGTACGGACGTGTCCATGACACAAATATTCACGCCCAAG
GGTCTGGAAATAGGATCGGCCGAAGGGCTTCTGAACGTGATGGCGTTGTT
ACTGTCCTTTGTGGCGGGCTCGGTGCTTTTGTGTGTGGTAGTGGAGCGGG
CGAAGAAGTGCCTCGACTTCACCGTAACGCTATTCTTTTTCCACTTTCTC
GCTTGCGGTGTGTACGAGTCATTCCCCTCCACCCTCCTCTGGTGGGTCTG
CCACCTTGTGGGCCTCTCCGTCATGACCTTGCTTGGCGAGCACCTATGTG
CCCGCAGCGAGCTCCGAGACATCCCCCTCTTCGTAATCGACCAAACCACA
GGATGAATGGGTGCTCAAGCCTTTGACCCCAAGCTGATAGTCTACCAGAT
CATCGCCCTTCAGTGCCTGTACTATTTGGTCGAGGGGGGAATCTTGATGG
GATTTAATTTAATTTTCGGTACGGACGTGTCCATGACACAAATATTCACG
CCCAAGGGTCTGGAAATAGGATCGGCCGAAGGGCTTCTGAACGTGATGGC
GTTGTTACTGTCCTTTGTGGCGGGCTCGGTGCTTTTGTGTGTGGTAGTGG
AGCGGGCGAAGAAGTGCCTCGACTTCACCGTAACGCTATTCTTTTTCCAC
TTTCTCGCTTGCGGTGTGTACGAGTCATTCCCCTCCACCCTCCTCTGGTG
GGTCTGCCACCTTGTGGGCCTCTCCGTCATGACCTTGCTTGGCGAGCACC
TATGTGCCCGCAGCGAGCTCCGAGACATCCCCCTCTTCGTAATCGACCAA
ACCACAGGATGAATGGGTGCTCAAGCCTTTGACCCCAAGCTGATAGTCTA
CCAGATCATCGCCCTTCAGTGCCTGTACTATTTGGTCGAGGGGGGAATCT
TGATGGGATTTAATTTAATTTTCGGTACGGACGTGTCCATGACACAAATA
TTCACGCCCAAGGGTCTGGAAATAGGATCGGCCGAAGGGCTTCTGAACGT
GATGGCGTTGTTACTGTCCTTTGTGGCGGGCTCGGTGCTTTTGTGTGTGG
TAGTGGAGCGGGCGAAGAAGTGCCTCGACTTCACCGTAACGCTATTCTTT
TTCCACTTTCTCGCTTGCGGTGTGTACGAGTCATTCCCCTCCACCCTCCT
CTGGTGGGTCTGCCACCTTGTGGGCCTCTCCGTCATGACCTTGCTTGGCG
AGCACCTATGTGCCCGCAGCGAGCTCCGAGACATCCCCCTCTTCGTAATC
GACCAAACCACAGGATGAATGGGTGCTCAAGCCTTTGACCCCAAGCTGAT
AGTCTACCAGATCATCGCCCTTCAGTGCCTGTACTATTTGGTCGAGGGGG
GAATCTTGATGGGATTTAATTTAATTTTCGGTACGGACGTGTCCATGACA
CAAATATTCACGCCCAAGGGTCTGGAAATAGGATCGGCCGAAGGGCTTCT
GAACGTGATGGCGTTGTTACTGTCCTTTGTGGCGGGCTCGGTGCTTTTGT
GTGTGGTAGTGGAGCGGGCGAAGAAGTGCCTCGACTTCACCGTAACGCTA
TTCTTTTTCCACTTTCTCGCTTGCGGTGTGTACGAGTCATTCCCCTCCAC
CCTCCTCTGGTGGGTCTGCCACCTTGTGGGCCTCTCCGTCATGACCTTGC
TTGGCGAGCACCTATGTGCCCGCAGCGAGCTCCGAGACATCCCCCTCTTC
GTAATCGACCAAACCACAGGATGAATGGGTGCTCAAGCCTTTGACCCCAA
GCTGATAGTCTACCAGATCATCGCCCTTCAGTGCCTGTACTATTTGGTCG
AGGGGGGAATCTTGATGGGATTTAATTTAATTTTCGGTACGGACGTGTCC
ATGACACAAATATTCACGCCCAAGGGTCTGGAAATAGGATCGGCCGAAGG
GCTTCTGAACGTGATGGCGTTGTTACTGTCCTTTGTGGCGGGCTCGGTGC
TTTTGTGTGTGGTAGTGGAGCGGGCGAAGAAGTGCCTCGACTTCACCGTA
ACGCTATTCTTTTTCCACTTTCTCGCTTGCGGTGTGTACGAGTCATTCCC
CTCCACCCTCCTCTGGTGGGTCTGCCACCTTGTGGGCCTCTCCGTCATGA
CCTTGCTTGGCGAGCACCTATGTGCCCGCAGCGAGCTCCGAGACATCCCC
CTCTTCGTAATCGACCAAACCACAGGATGAATGGGTGCTCAAGCCTTTGA
CCCCAAGCTGATAGTCTACCAGATCATCGCCCTTCAGTGCCTGTACTATT
TGGTCGAGGGGGGAATCTTGATGGGATTTAATTTAATTTTCGGTACGGAC
GTGTCCATGACACAAATATTCACGCCCAAGGGTCTGGAAATAGGATCGGC
CGAAGGGCTTCTGAACGTGATGGCGTTGTTACTGTCCTTTGTGGCGGGCT
CGGTGCTTTTGTGTGTGGTAGTGGAGCGGGCGAAGAAGTGCCTCGACTTC
ACCGTAACGCTATTCTTTTTCCACTTTCTCGCTTGCGGTGTGTACGAGTC
ATTCCCCTCCACCCTCCTCTGGTGGGTCTGCCACCTTGTGGGCCTCTCCG
TCATGACCTTGCTTGGCGAGCACCTATGTGCCCGCAGCGAGCTCCGAGAC
ATCCCCCTCTTCGTAATCGACCAAACCACAGGATGA
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Synonyms
Publications