jgi.p|Nanoce1779_2|565022, mRNA_3262 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565022
Unique NamemRNA_3262
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length519
Alignment locationscaffold_7:1044088..1044606 +

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Properties
Property NameValue
TranscriptId565108
TrackFilteredModels2
ProteinId565022
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1044088..1044606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565022gene_3262Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565022mRNA_3262-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3262CDS_3262Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3262 ID=mRNA_3262|Name=jgi.p|Nanoce1779_2|565022|organism=Nannochloropsis oceanica|type=mRNA|length=519bp
ATGCAGCGGCAAATTTGGCCCCTCATGAGATCGCCTCTGATGCGTCCGGT
GGTCGCGCCTTGTCGTGGTTTTGCCAAGGGGTCGCCCACACACGTCGTCA
TGCATGAGATGAGGGAGGCCGACTCACTCCACGCGGTTCAGGGTACCTCG
GGCCGGCACACCTTGTACAGCGACCTCATGCCCGAAGCAGGGGGTGGCAA
CAAGGGTCCCGGCCCTAAAGAATACGTTTTGACGGCACTAGGCTCATGCA
CGCTCATCACAATGCGGATATACTCTGATCTCATGATCAAGGAAGGAAAG
TGGCCCGGCAAGACGATTGAGAAAATGAGTGTCACCTGCAGCGAGCACGG
GGACGACCACCACGTCCCCACACGTATCGAAGTTCGCGTCTCTCTCAAAT
CGAATCTCGACGAGGACCAGATCAAGCGCCTCATGGCGGCGGCGGGGAAG
TGCCCCGTGAAAAGGATGCTTTTGGGAGGAATCAAGGAAGGCATAACAAC
GGTGGTTGACAAAGATTGA
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protein sequence of jgi.p|Nanoce1779_2|565022

>mRNA_3262-protein ID=mRNA_3262-protein|Name=jgi.p|Nanoce1779_2|565022|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MQRQIWPLMRSPLMRPVVAPCRGFAKGSPTHVVMHEMREADSLHAVQGTS
GRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGK
WPGKTIEKMSVTCSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGK
CPVKRMLLGGIKEGITTVVDKD*
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mRNA from alignment at scaffold_7:1044088..1044606+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3262 ID=mRNA_3262|Name=jgi.p|Nanoce1779_2|565022|organism=Nannochloropsis oceanica|type=mRNA|length=519bp|location=Sequence derived from alignment at scaffold_7:1044088..1044606+ (Nannochloropsis oceanica)
ATGCAGCGGCAAATTTGGCCCCTCATGAGATCGCCTCTGATGCGTCCGGT
GGTCGCGCCTTGTCGTGGTTTTGCCAAGGGGTCGCCCACACACGTCGTCA
TGCATGAGATGAGGGAGGCCGACTCACTCCACGCGGTTCAGGGTACCTCG
GGCCGGCACACCTTGTACAGCGACCTCATGCCCGAAGCAGGGGGTGGCAA
CAAGGGTCCCGGCCCTAAAGAATACGTTTTGACGGCACTAGGCTCATGCA
CGCTCATCACAATGCGGATATACTCTGATCTCATGATCAAGGAAGGAAAG
TGGCCCGGCAAGACGATTGAGAAAATGAGTGTCACCTGCAGCGAGCACGG
GGACGACCACCACGTCCCCACACGTATCGAAGTTCGCGTCTCTCTCAAAT
CGAATCTCGACGAGGACCAGATCAAGCGCCTCATGGCGGCGGCGGGGAAG
TGCCCCGTGAAAAGGATGCTTTTGGGAGGAATCAAGGAAGGCATAACAAC
GGTGGTTGACAAAGATTGA
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Coding sequence (CDS) from alignment at scaffold_7:1044088..1044606+

>mRNA_3262 ID=mRNA_3262|Name=jgi.p|Nanoce1779_2|565022|organism=Nannochloropsis oceanica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_7:1044088..1044606+ (Nannochloropsis oceanica)
ATGCAGCGGCAAATTTGGCCCCTCATGAGATCGCCTCTGATGCGTCCGGT
GGTCGCGCCTTGTCGTGGTTTTGCCAAGGGGTCGCCCACACACGTCGTCA
TGCATGAGATGAGGGAGGCCGACTCACTCCACGCGGTTCAGGGTACCTCG
GGCCGGCACACCTTGTACAGCGACCTCATGCCCGAAGCAGGGGGTGGCAA
CAAGGGTCCCGGCCCTAAAGAATACGTTTTGACGGCACTAGGCTCATGCA
CGCTCATCACAATGCGGATATACTCTGATCTCATGATCAAGGAAGGAAAG
TGGCCCGGCAAGACGATTGAGAAAATGAGTGTCACCTGCAGCGAGCACGG
GGACGACCACCACGTCCCCACACGTATCGAAGTTCGCGTCTCTCTCAAAT
CGAATCTCGACGAGGACCAGATCAAGCGCCTCATGGCGGCGGCGGGGAAG
TGCCCCGTGAAAAGGATGCTTTTGGGAGGAATCAAGGAAGGCATAACAAC
GGTGGTTGACAAAGATTGA
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Synonyms
Publications