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Properties
Property Name | Value |
TranscriptId | 526733 |
Track | FilteredModels2 |
ProteinId | 526647 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_7 | supercontig | scaffold_7:656247..658442 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3099 ID=mRNA_3099|Name=jgi.p|Nanoce1779_2|526647|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp ATGTCCCCCTTTCCTCCCCCTTCATCTGCCGCGCCTCAGCCTCTCACCTC GTCCACCTCCTCTTCCATTCCCCCTCCCACCCGCTGTGTCCTCGAAGACT TTACACGCTGCAGTGAATCCCACCTATGGAAACTAATGATGTCCTTCTAC GACCGCAAGGGGGTCGAGTCCTGGTCCCAAGGTATCGTCCCGCATTTCAT CACTTGCAACGCCTTCATCGGCCACTCGTACGCCCAAGTCCTCCAAGGCT ACCTTCGTGACTGCGCCCGCAAAGCCCGTGAAAATGGTCCTGGGTTTCCT CTTGTCCTCGATCCGAACGAACCCTTGTATATTATCGAGCTCGGTGCTGG ATCGGGTAAGTTCAGTTTCTTCATGCTCAAAGCGCTGGCGGAAATGCGGG AACTCCTCGACTTCCCCTTTAAGAAAATCGTCTATGTCATGACGGATTTC ACGCAAAATAACTTTAAGTTCTGGGAATCACATCCGGGATTGAGGCCTTA CATCGAGCAGGGGAGTTTGGACTTGGCGATTTTCGATGCTGTCCACGATC AGGTCATTCACTTAGCGCACGCGAAGAAGACCTTGGCTCCGGGGACGTTG AAGAATCCCGTGTGTGTGGTGGCGAATTATTTGTTCGACACGCTATGTCA TGACATCTTCCAGGTGGAGGGGGGAGTGTTGAAGGAAGGGCTGATAAGCG TGGGGAGCAAGAAGGGCCACGAGCCTGACCCGCTGGACCCGGAGATTATC AAGAGGTTTGAGAATCGTTTTATGTATAGGGAGATCGGTCCTGACTATTA CTGGGGGGGAGAGGACAAGGAGGATGCCGTGCACTTCCGCCGGATCCTCC AATGGTACCAACATCACTTCGGGCAATGCCCGTCGGGTGCATCGTTTCTA TTTCCTATCGGCGCGCTTCGGGCCTTGCGGCGGCTGCTGGCCCTGAGTGG AGGGAGGGGGTTGGTCGTGAGTGGGGACAAAGGGAATAACCACGCTGAGC AGTTCAAGGGGTTGGTGGACCCTCACATTGCGGTGCATGGTAGCTTTTCA GTGATGGTTAATTACCACGCGATTGGGATGTATTTTATCAGTCGGGGAGG GTTTGCCTTACATAACCCCCAGGAGGAGGCGAGTCTGAAGGTGTCGGCAT TCGACCGCGCTCGTGCCTTTCCCGCCCTGCGTGCCTCCTTCTACAACGCC GTCGATCGGTTTGGCCCCAACGATTTCTTTGTCATGCAAAAATGTATGAA GGAAGACTCGCCCAATCCCACCCTCAAGGCAGTGGTGGCGTTGTTGAAAC TAGGTGATTGGGACCCGGACGTGTTTTATAAATTCCGAGACACGATTTTG AATCAGGTGCCGACGAGCGGACAGAAATTGAGGAACGACCTTTGTAGGGG GATCCCGCGGGTGTGGGAGAATTACTACATGCTCGATCGGGATAAGGATA TAGCGTTTGAGATCGGGCGGTTCTATTATGGCATTCGCGAGTATGAACGG GCCCTCGTCTACTATTTGAAGAGCTCCGAGGCGATAGGGGAGCATCATGT CACCTGCCACAACATGGGCTTATGCCATTACTCACTCGGGCAGCACGTCG AGGCTTTAGAGTGCTTTCAACGCTCCTTGTCCTTAAATGCCTCCTACGAA AAAGCCAGGTCTTGGCAGCAAAAGGTAATGCAAGAAGTGAATCCCTCCCC CGTGCCTTCCCCCTTGCCTTCGCCTCCTTATTTGGGGCAGCAGCAGGGGG ATAGAGGGGAGAAGGGAGGGAGGGAAGGAGGGTTGGTCACGCCGGAGGTG GAGAATTTGTCGCTTGAAGACCGGGGAGGCTCGGTGTCTTCGCAAAATAC GAGCCAAGGAGAGGGTTGGAGGGAGGAAGTGTAG back to topprotein sequence of jgi.p|Nanoce1779_2|526647 >mRNA_3099-protein ID=mRNA_3099-protein|Name=jgi.p|Nanoce1779_2|526647|organism=Nannochloropsis oceanica|type=polypeptide|length=628bp MSPFPPPSSAAPQPLTSSTSSSIPPPTRCVLEDFTRCSESHLWKLMMSFY DRKGVESWSQGIVPHFITCNAFIGHSYAQVLQGYLRDCARKARENGPGFP LVLDPNEPLYIIELGAGSGKFSFFMLKALAEMRELLDFPFKKIVYVMTDF TQNNFKFWESHPGLRPYIEQGSLDLAIFDAVHDQVIHLAHAKKTLAPGTL KNPVCVVANYLFDTLCHDIFQVEGGVLKEGLISVGSKKGHEPDPLDPEII KRFENRFMYREIGPDYYWGGEDKEDAVHFRRILQWYQHHFGQCPSGASFL FPIGALRALRRLLALSGGRGLVVSGDKGNNHAEQFKGLVDPHIAVHGSFS VMVNYHAIGMYFISRGGFALHNPQEEASLKVSAFDRARAFPALRASFYNA VDRFGPNDFFVMQKCMKEDSPNPTLKAVVALLKLGDWDPDVFYKFRDTIL NQVPTSGQKLRNDLCRGIPRVWENYYMLDRDKDIAFEIGRFYYGIREYER ALVYYLKSSEAIGEHHVTCHNMGLCHYSLGQHVEALECFQRSLSLNASYE KARSWQQKVMQEVNPSPVPSPLPSPPYLGQQQGDRGEKGGREGGLVTPEV ENLSLEDRGGSVSSQNTSQGEGWREEV* back to topmRNA from alignment at scaffold_7:656247..658442+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3099 ID=mRNA_3099|Name=jgi.p|Nanoce1779_2|526647|organism=Nannochloropsis oceanica|type=mRNA|length=2196bp|location=Sequence derived from alignment at scaffold_7:656247..658442+ (Nannochloropsis oceanica) ATGTCCCCCTTTCCTCCCCCTTCATCTGCCGCGCCTCAGCCTCTCACCTC
GTCCACCTCCTCTTCCATTCCCCCTCCCACCCGCTGTGTCCTCGAAGACT
TTACACGCTGCAGTGAATCCCACCTATGGAAACTAATGATGTCCTTCTAC
GACCGCAAGGGGGTCGAGTCCTGGTCCCAAGGTATCGTCCCGCATTTCAT
CACTTGCAACGCCTTCATCGGCCACTCGTACGCCCAAGTCCTCCAAGGCT
ACCTTCGTGACTGCGCCCGCAAAGCCCGTGAAAATGGTCCTGGGTTTCCT
CTTGTCCTCGATCCGAACGAACCCTTGTATATTATCGAGCTCGGTGCTGG
ATCGGGTAAGTTCAGTTTCTTCATGCTCAAAGCGCTGGCGGAAATGCGGG
AACTCCTCGACTTCCCCTTTAAGAAAATCGTCTATGTCATGACGGATTTC
ACGCAAAATAACTTTAAGTTCTGGGAATCACATCCGGGATTGAGGCCTTA
CATCGAGCAGGGGAGTTTGGACTTGGCGATTTTCGATGCTGTCCACGATC
AGGTCATTCACTTAGCGCACGCGAAGAAGACCTTGGCTCCGGGGACGTTG
AAGAATCCCGTGTGTGTGGTGGCGAATTATTTGTTCGACACGCTATGTCA
TGACATCTTCCAGGTGGAGGGGGGAGTGTTGAAGGAAGGGCTGATAAGCG
TGGGGAGCAAGAAGGGCCACGAGCCTGACCCGCTGGACCCGGAGATTATC
AAGAGGTTTGAGAATCGTTTTATGTATAGGGAGATCGGTCCTGACTATTA
CTGTCCTGCTACAGGTGATGGTGGTGGTGTTGTTGTTGATGGTGGCGCTG
CAACTTTCGGCGGTTCGGATGAGACCTGTTTTCCTTCTGCTACTGCTGCT
GCCAATGGCAGAGGTGAGAGCCAAGGGGGGGGAGAGGACAAGGAGGATGC
CGTGCACTTCCGCCGGATCCTCCAATGGTACCAACATCACTTCGGGCAAT
GCCCGTCGGGTGCATCGTTTCTATTTCCTATCGGCGCGCTTCGGGCCTTG
CGGCGGCTGCTGGCCCTGAGTGGAGGGAGGGGGTTGGTCGTGAGTGGGGA
CAAAGGGAATAACCACGCTGAGCAGTTCAAGGGGTTGGTGGACCCTCACA
TTGCGGTGCATGGTAGCTTTTCAGTGATGGTTAATTACCACGCGATTGGG
ATGTATTTTATCAGTCGGGGAGGGTTTGCCTTACATAACCCCCAGGAGGA
GGCGAGTCTGAAGGTGTCGGCATTCGTGTTGAGCGGCAATGATGGCATTG
CCGAGGATGAGGAGGAGGAGGAGGAGGAGGACGATGGTCAGAGGCGGCAT
TGCGTTATCATGTCCGCTCCTTCCACCTTTACCTCCACATCTTCCTCCGT
CCCTTCCTCTCCCCCTTCCTCCTATACGTCATGGGTCGGGCCAGGGGTGG
AAGCCAAAGGGGAGGACCGCGCTCGTGCCTTTCCCGCCCTGCGTGCCTCC
TTCTACAACGCCGTCGATCGGTTTGGCCCCAACGATTTCTTTGTCATGCA
AAAATGTATGAAGGAAGACTCGCCCAATCCCACCCTCAAGGCAGTGGTGG
CGTTGTTGAAACTAGGTGATTGGGACCCGGACGTGTTTTATAAATTCCGA
GACACGATTTTGAATCAGGTGCCGACGAGCGGACAGAAATTGAGGAACGA
CCTTTGTAGGGGGATCCCGCGGGTGTGGGAGAATTACTACATGCTCGATC
GGGATAAGGATATAGCGTTTGAGATCGGGCGGTTCTATTATGGCATTCGC
GAGTATGAACGGGCCCTCGTCTACTATTTGAAGAGCTCCGAGGCGATAGG
GGAGCATCATGTCACCTGCCACAACATGGGCTTATGCCATTACTCACTCG
GGCAGCACGTCGAGGCTTTAGAGTGCTTTCAACGCTCCTTGTCCTTAAAT
GCCTCCTACGAAAAAGCCAGGTCTTGGCAGCAAAAGGTAATGCAAGAAGT
GAATCCCTCCCCCGTGCCTTCCCCCTTGCCTTCGCCTCCTTATTTGGGGC
AGCAGCAGGGGGATAGAGGGGAGAAGGGAGGGAGGGAAGGAGGGTTGGTC
ACGCCGGAGGTGGAGAATTTGTCGCTTGAAGACCGGGGAGGCTCGGTGTC
TTCGCAAAATACGAGCCAAGGAGAGGGTTGGAGGGAGGAAGTGTAG back to topCoding sequence (CDS) from alignment at scaffold_7:656247..658442+ >mRNA_3099 ID=mRNA_3099|Name=jgi.p|Nanoce1779_2|526647|organism=Nannochloropsis oceanica|type=CDS|length=5652bp|location=Sequence derived from alignment at scaffold_7:656247..658442+ (Nannochloropsis oceanica) ATGTCCCCCTTTCCTCCCCCTTCATCTGCCGCGCCTCAGCCTCTCACCTC GTCCACCTCCTCTTCCATTCCCCCTCCCACCCGCTGTGTCCTCGAAGACT TTACACGCTGCAGTGAATCCCACCTATGGAAACTAATGATGTCCTTCTAC GACCGCAAGGGGGTCGAGTCCTGGTCCCAAGGTATCGTCCCGCATTTCAT CACTTGCAACGCCTTCATCGGCCACTCGTACGCCCAAGTCCTCCAAGGCT ACCTTCGTGACTGCGCCCGCAAAGCCCGTGAAAATGGTCCTGGGTTTCCT CTTGTCCTCGATCCGAACGAACCCTTGTATATTATCGAGCTCGGTGCTGG ATCGGGTAAGTTCAGTTTCTTCATGCTCAAAGCGCTGGCGGAAATGCGGG AACTCCTCGACTTCCCCTTTAAGAAAATCGTCTATGTCATGACGGATTTC ACGCAAAATAACTTTAAGTTCTGGGAATCACATCCGGGATTGAGGCCTTA CATCGAGCAGGGGAGTTTGGACTTGGCGATTTTCGATGCTGTCCACGATC AGGTCATTCACTTAGCGCACGCGAAGAAGACCTTGGCTCCGGGGACGTTG AAGAATCCCGTGTGTGTGGTGGCGAATTATTTGTTCGACACGCTATGTCA TGACATCTTCCAGGTGGAGGGGGGAGTGTTGAAGGAAGGGCTGATAAGCG TGGGGAGCAAGAAGGGCCACGAGCCTGACCCGCTGGACCCGGAGATTATC AAGAGGTTTGAGAATCGTTTTATGTATAGGGAGATCGGTCCTGACTATTA CTGGGGGGGAGAGGACAAGGAGGATGCCGTGCACTTCCGCCGGATCCTCC AATGGTACCAACATCACTTCGGGCAATGCCCGTCGGGTGCATCGTTTCTA TTTCCTATCGGCGCGCTTCGGGCCTTGCGGCGGCTGCTGGCCCTGAGTGG AGGGAGGGGGTTGGTCGTGAGTGGGGACAAAGGGAATAACCACGCTGAGC AGTTCAAGGGGTTGGTGGACCCTCACATTGCGGTGCATGGTAGCTTTTCA GTGATGGTTAATTACCACGCGATTGGGATGTATTTTATCAGTCGGGGAGG GTTTGCCTTACATAACCCCCAGGAGGAGGCGAGTCTGAAGGTGTCGGCAT TCGACCGCGCTCGTGCCTTTCCCGCCCTGCGTGCCTCCTTCTACAACGCC GTCGATCGGTTTGGCCCCAACGATTTCTTTGTCATGCAAAAATGTATGAA GGAAGACTCGCCCAATCCCACCCTCAAGGCAGTGGTGGCGTTGTTGAAAC TAGGTGATTGGGACCCGGACGTGTTTTATAAATTCCGAGACACGATTTTG AATCAGGTGCCGACGAGCGGACAGAAATTGAGGAACGACCTTTGTAGGGG GATCCCGCGGGTGTGGGAGAATTACTACATGCTCGATCGGGATAAGGATA TAGCGTTTGAGATCGGGCGGTTCTATTATGGCATTCGCGAGTATGAACGG GCCCTCGTCTACTATTTGAAGAGCTCCGAGGCGATAGGGGAGCATCATGT CACCTGCCACAACATGGGCTTATGCCATTACTCACTCGGGCAGCACGTCG AGGCTTTAGAGTGCTTTCAACGCTCCTTGTCCTTAAATGCCTCCTACGAA AAAGCCAGGTCTTGGCAGCAAAAGGTAATGCAAGAAGTGAATCCCTCCCC CGTGCCTTCCCCCTTGCCTTCGCCTCCTTATTTGGGGCAGCAGCAGGGGG ATAGAGGGGAGAAGGGAGGGAGGGAAGGAGGGTTGGTCACGCCGGAGGTG GAGAATTTGTCGCTTGAAGACCGGGGAGGCTCGGTGTCTTCGCAAAATAC GAGCCAAGGAGAGGGTTGGAGGGAGGAAGTGTAGATGTCCCCCTTTCCTC CCCCTTCATCTGCCGCGCCTCAGCCTCTCACCTCGTCCACCTCCTCTTCC ATTCCCCCTCCCACCCGCTGTGTCCTCGAAGACTTTACACGCTGCAGTGA ATCCCACCTATGGAAACTAATGATGTCCTTCTACGACCGCAAGGGGGTCG AGTCCTGGTCCCAAGGTATCGTCCCGCATTTCATCACTTGCAACGCCTTC ATCGGCCACTCGTACGCCCAAGTCCTCCAAGGCTACCTTCGTGACTGCGC CCGCAAAGCCCGTGAAAATGGTCCTGGGTTTCCTCTTGTCCTCGATCCGA ACGAACCCTTGTATATTATCGAGCTCGGTGCTGGATCGGGTAAGTTCAGT TTCTTCATGCTCAAAGCGCTGGCGGAAATGCGGGAACTCCTCGACTTCCC CTTTAAGAAAATCGTCTATGTCATGACGGATTTCACGCAAAATAACTTTA AGTTCTGGGAATCACATCCGGGATTGAGGCCTTACATCGAGCAGGGGAGT TTGGACTTGGCGATTTTCGATGCTGTCCACGATCAGGTCATTCACTTAGC GCACGCGAAGAAGACCTTGGCTCCGGGGACGTTGAAGAATCCCGTGTGTG TGGTGGCGAATTATTTGTTCGACACGCTATGTCATGACATCTTCCAGGTG GAGGGGGGAGTGTTGAAGGAAGGGCTGATAAGCGTGGGGAGCAAGAAGGG CCACGAGCCTGACCCGCTGGACCCGGAGATTATCAAGAGGTTTGAGAATC GTTTTATGTATAGGGAGATCGGTCCTGACTATTACTGGGGGGGAGAGGAC AAGGAGGATGCCGTGCACTTCCGCCGGATCCTCCAATGGTACCAACATCA CTTCGGGCAATGCCCGTCGGGTGCATCGTTTCTATTTCCTATCGGCGCGC TTCGGGCCTTGCGGCGGCTGCTGGCCCTGAGTGGAGGGAGGGGGTTGGTC GTGAGTGGGGACAAAGGGAATAACCACGCTGAGCAGTTCAAGGGGTTGGT GGACCCTCACATTGCGGTGCATGGTAGCTTTTCAGTGATGGTTAATTACC ACGCGATTGGGATGTATTTTATCAGTCGGGGAGGGTTTGCCTTACATAAC CCCCAGGAGGAGGCGAGTCTGAAGGTGTCGGCATTCGACCGCGCTCGTGC CTTTCCCGCCCTGCGTGCCTCCTTCTACAACGCCGTCGATCGGTTTGGCC CCAACGATTTCTTTGTCATGCAAAAATGTATGAAGGAAGACTCGCCCAAT CCCACCCTCAAGGCAGTGGTGGCGTTGTTGAAACTAGGTGATTGGGACCC GGACGTGTTTTATAAATTCCGAGACACGATTTTGAATCAGGTGCCGACGA GCGGACAGAAATTGAGGAACGACCTTTGTAGGGGGATCCCGCGGGTGTGG GAGAATTACTACATGCTCGATCGGGATAAGGATATAGCGTTTGAGATCGG GCGGTTCTATTATGGCATTCGCGAGTATGAACGGGCCCTCGTCTACTATT TGAAGAGCTCCGAGGCGATAGGGGAGCATCATGTCACCTGCCACAACATG GGCTTATGCCATTACTCACTCGGGCAGCACGTCGAGGCTTTAGAGTGCTT TCAACGCTCCTTGTCCTTAAATGCCTCCTACGAAAAAGCCAGGTCTTGGC AGCAAAAGGTAATGCAAGAAGTGAATCCCTCCCCCGTGCCTTCCCCCTTG CCTTCGCCTCCTTATTTGGGGCAGCAGCAGGGGGATAGAGGGGAGAAGGG AGGGAGGGAAGGAGGGTTGGTCACGCCGGAGGTGGAGAATTTGTCGCTTG AAGACCGGGGAGGCTCGGTGTCTTCGCAAAATACGAGCCAAGGAGAGGGT TGGAGGGAGGAAGTGTAGATGTCCCCCTTTCCTCCCCCTTCATCTGCCGC GCCTCAGCCTCTCACCTCGTCCACCTCCTCTTCCATTCCCCCTCCCACCC GCTGTGTCCTCGAAGACTTTACACGCTGCAGTGAATCCCACCTATGGAAA CTAATGATGTCCTTCTACGACCGCAAGGGGGTCGAGTCCTGGTCCCAAGG TATCGTCCCGCATTTCATCACTTGCAACGCCTTCATCGGCCACTCGTACG CCCAAGTCCTCCAAGGCTACCTTCGTGACTGCGCCCGCAAAGCCCGTGAA AATGGTCCTGGGTTTCCTCTTGTCCTCGATCCGAACGAACCCTTGTATAT TATCGAGCTCGGTGCTGGATCGGGTAAGTTCAGTTTCTTCATGCTCAAAG CGCTGGCGGAAATGCGGGAACTCCTCGACTTCCCCTTTAAGAAAATCGTC TATGTCATGACGGATTTCACGCAAAATAACTTTAAGTTCTGGGAATCACA TCCGGGATTGAGGCCTTACATCGAGCAGGGGAGTTTGGACTTGGCGATTT TCGATGCTGTCCACGATCAGGTCATTCACTTAGCGCACGCGAAGAAGACC TTGGCTCCGGGGACGTTGAAGAATCCCGTGTGTGTGGTGGCGAATTATTT GTTCGACACGCTATGTCATGACATCTTCCAGGTGGAGGGGGGAGTGTTGA AGGAAGGGCTGATAAGCGTGGGGAGCAAGAAGGGCCACGAGCCTGACCCG CTGGACCCGGAGATTATCAAGAGGTTTGAGAATCGTTTTATGTATAGGGA GATCGGTCCTGACTATTACTGGGGGGGAGAGGACAAGGAGGATGCCGTGC ACTTCCGCCGGATCCTCCAATGGTACCAACATCACTTCGGGCAATGCCCG TCGGGTGCATCGTTTCTATTTCCTATCGGCGCGCTTCGGGCCTTGCGGCG GCTGCTGGCCCTGAGTGGAGGGAGGGGGTTGGTCGTGAGTGGGGACAAAG GGAATAACCACGCTGAGCAGTTCAAGGGGTTGGTGGACCCTCACATTGCG GTGCATGGTAGCTTTTCAGTGATGGTTAATTACCACGCGATTGGGATGTA TTTTATCAGTCGGGGAGGGTTTGCCTTACATAACCCCCAGGAGGAGGCGA GTCTGAAGGTGTCGGCATTCGACCGCGCTCGTGCCTTTCCCGCCCTGCGT GCCTCCTTCTACAACGCCGTCGATCGGTTTGGCCCCAACGATTTCTTTGT CATGCAAAAATGTATGAAGGAAGACTCGCCCAATCCCACCCTCAAGGCAG TGGTGGCGTTGTTGAAACTAGGTGATTGGGACCCGGACGTGTTTTATAAA TTCCGAGACACGATTTTGAATCAGGTGCCGACGAGCGGACAGAAATTGAG GAACGACCTTTGTAGGGGGATCCCGCGGGTGTGGGAGAATTACTACATGC TCGATCGGGATAAGGATATAGCGTTTGAGATCGGGCGGTTCTATTATGGC ATTCGCGAGTATGAACGGGCCCTCGTCTACTATTTGAAGAGCTCCGAGGC GATAGGGGAGCATCATGTCACCTGCCACAACATGGGCTTATGCCATTACT CACTCGGGCAGCACGTCGAGGCTTTAGAGTGCTTTCAACGCTCCTTGTCC TTAAATGCCTCCTACGAAAAAGCCAGGTCTTGGCAGCAAAAGGTAATGCA AGAAGTGAATCCCTCCCCCGTGCCTTCCCCCTTGCCTTCGCCTCCTTATT TGGGGCAGCAGCAGGGGGATAGAGGGGAGAAGGGAGGGAGGGAAGGAGGG TTGGTCACGCCGGAGGTGGAGAATTTGTCGCTTGAAGACCGGGGAGGCTC GGTGTCTTCGCAAAATACGAGCCAAGGAGAGGGTTGGAGGGAGGAAGTGT AG back to top
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