jgi.p|Nanoce1779_2|580613, mRNA_2510 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580613
Unique NamemRNA_2510
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length800
Alignment locationscaffold_5:525863..526885 +

Link to JBrowse

Properties
Property NameValue
TranscriptId580699
TrackFilteredModels2
ProteinId580613
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:525863..526885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580613gene_2510Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580613mRNA_2510-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2510CDS_2510Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2510 ID=mRNA_2510|Name=jgi.p|Nanoce1779_2|580613|organism=Nannochloropsis oceanica|type=mRNA|length=800bp
TTGGCGGAAGGGCGTCAATAGCCTCTCAGGCCAGCAAGGAGTTCAGAATT
GTTGTCGAGGTCCTCGACAACAATTCGACTCGAGGAGCAAGAGTTCTCCG
AGAGTCTTGGAGAGTCTTCACTCCGCTTGGCCTTGCCATGTTCGCTAGGC
CGATAGCATCCTGAAAGCTCACTGCTAGACCCGCTCACTCGACCACCCCT
CGTGCAATAAGGACAGGAGAAGGACCTGAGCGTGCGCGATAACACTCAGT
CGCGCGGCCAGCATCTACATCAGAAAAGTGCGCCCTGGGCAAGCAATGTC
GGCCGACGAAATCGCTGGAGCCTTTGTCCAACACTATTATGGCACTTTGG
ACAATAACATCGCAGGACTGGGGGCTCTATATCGGGACAACTCAATGCTG
ACGTTCGAGAGGCAGCAGTTCATGGGCACCGCCAACATATCGCAAAAGCT
GGTCGGCCTGGGTAAGGTCGTCCATAATGTGCAACATTTCGATGTGCAGC
CGTCAGTGGATCCGGGAAACCTAGTCATTCTTGTGCTTGGTCAAATCAAG
CTGGACGGGCAGGATAACCCCCTTCAGTTTTGCGAGTTCTTCCAGCTTGT
TGCCTCCACCCCTGGGCAGTACTACATTCACAATCAAATTTTCAGGCTTA
TATACGCATAACCGAAAGAATCCTCTGGAGTGTCGTCGTTTGCGCCTATT
CCCGGGAGAGAAAACACGTACTTACAGACGGTAAGGTGAAATCATTTGGC
AGTACGTTATGAGAATATGATGAAAAATAACGAATGGTACCCACATGAAG
back to top

protein sequence of jgi.p|Nanoce1779_2|580613

>mRNA_2510-protein ID=mRNA_2510-protein|Name=jgi.p|Nanoce1779_2|580613|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQ
KLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQ
LVASTPGQYYIHNQIFRLIYA*
back to top

mRNA from alignment at scaffold_5:525863..526885+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2510 ID=mRNA_2510|Name=jgi.p|Nanoce1779_2|580613|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp|location=Sequence derived from alignment at scaffold_5:525863..526885+ (Nannochloropsis oceanica)
TTGGCGGAAGGGCGTCAATAGCCTCTCAGGCCAGCAAGGAGTTCAGAATT
GTTGTCGAGGTCCTCGACAACAATTCGACTCGAGGAGCAAGAGTTCTCCG
AGAGTCTTGGAGAGTCTTCACTCCGCTTGGCCTTGCCATGTTCGCTAGGC
CGATAGCATCCTGAAAGCTCACTGCTAGACCCGCTCACTCGACCACCCCT
CGTGCAATAAGGACAGGAGAAGGACCTGAGCGTGCGCGATAACACTCAGT
CGCGCGGCCAGCATCTACATCAGAAAAGTGCGCCCTGGGCAAGCAATGTC
GGCCGACGAAATCGCTGGAGCCTTTGTCCAACACTATTATGGCACTTTGG
ACAATAACATCGCAGGACTGGGGGCTCTATATGTACGTCAGGCAACAGGG
AAGGGGAAAACTATTGCCAGACACATACACATACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACATACATACACACACACACACCTCTGCGACTCCAACCCGCCAACTTC
CACAGCGGGACAACTCAATGCTGACGTTCGAGAGGCAGCAGTTCATGGGC
ACCGCCAACATATCGCAAAAGCTGGTCGGCCTGGGTAAGGTCGTCCATAA
TGTGCAACATTTCGATGTGCAGCCGTCAGTGGATCCGGGAAACCTAGTCA
TTCTTGTGCTTGGTCAAATCAAGCTGGACGGGCAGGATAACCCCCTTCAG
TTTTGCGAGTTCTTCCAGCTTGTTGCCTCCACCCCTGGGCAGTACTACAT
TCACAATCAAATTTTCAGGCTTATATACGCATAACCGAAAGAATCCTCTG
GAGTGTCGTCGTTTGCGCCTATTCCCGGGAGAGAAAACACGTACTTACAG
ACGGTAAGGTGAAATCATTTGGCAGTACGTTATGAGAATATGATGAAAAA
TAACGAATGGTACCCACATGAAG
back to top

Coding sequence (CDS) from alignment at scaffold_5:525863..526885+

>mRNA_2510 ID=mRNA_2510|Name=jgi.p|Nanoce1779_2|580613|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_5:525863..526885+ (Nannochloropsis oceanica)
ATGTCGGCCGACGAAATCGCTGGAGCCTTTGTCCAACACTATTATGGCAC
TTTGGACAATAACATCGCAGGACTGGGGGCTCTATATCGGGACAACTCAA
TGCTGACGTTCGAGAGGCAGCAGTTCATGGGCACCGCCAACATATCGCAA
AAGCTGGTCGGCCTGGGTAAGGTCGTCCATAATGTGCAACATTTCGATGT
GCAGCCGTCAGTGGATCCGGGAAACCTAGTCATTCTTGTGCTTGGTCAAA
TCAAGCTGGACGGGCAGGATAACCCCCTTCAGTTTTGCGAGTTCTTCCAG
CTTGTTGCCTCCACCCCTGGGCAGTACTACATTCACAATCAAATTTTCAG
GCTTATATACGCATAAATGTCGGCCGACGAAATCGCTGGAGCCTTTGTCC
AACACTATTATGGCACTTTGGACAATAACATCGCAGGACTGGGGGCTCTA
TATCGGGACAACTCAATGCTGACGTTCGAGAGGCAGCAGTTCATGGGCAC
CGCCAACATATCGCAAAAGCTGGTCGGCCTGGGTAAGGTCGTCCATAATG
TGCAACATTTCGATGTGCAGCCGTCAGTGGATCCGGGAAACCTAGTCATT
CTTGTGCTTGGTCAAATCAAGCTGGACGGGCAGGATAACCCCCTTCAGTT
TTGCGAGTTCTTCCAGCTTGTTGCCTCCACCCCTGGGCAGTACTACATTC
ACAATCAAATTTTCAGGCTTATATACGCATAA
back to top
Synonyms
Publications